>AAPC_PENCL (Q40784) Putative apospory-associated protein C|
          Length = 329

 Score =  216 bits (549), Expect = 6e-56
 Identities = 106/178 (59%), Positives = 128/178 (71%), Gaps = 3/178 (1%)
 Frame = +1

Query: 106 AIPRPGMSSSGAGEEGPLP---VELRKGANGLDKVVLRQGPRISAEVYLYGGHVTSWKDQ 276
           A P P  +++    +  LP    EL K  +GL+KVVLR      AE+YLYGG VTSWK+ 
Sbjct: 2   AAPAPAGAAASPSPKPQLPSPFAELVKTPSGLEKVVLRGARNCCAEIYLYGGQVTSWKND 61

Query: 277 FGEELLFVSNKAIFKPPKAIRGGIPICFPQFSNFGHLEAHGFARNKIWXXXXXXXXXXXX 456
            GEELLF+S+KAIFKPPKAIRGGIPIC PQF   G+LE HGFARN+ W            
Sbjct: 62  NGEELLFLSSKAIFKPPKAIRGGIPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPLPVN 121

Query: 457 ISSRAYIDLILKPTDEDLKIWPHSFEYRLRIALGPGGDLMLTSRIRNTNADGKPFSFT 630
            + +A++DLIL+P +EDLKIWPHSFE+RLR+ALGP GDL LTSRIRNTN DG+PFS+T
Sbjct: 122 PAIKAFVDLILRPAEEDLKIWPHSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYT 179

>YEAD_ECOLI (P39173) UPF0010 protein yeaD (Unknown protein from 2D-page spots|
           T26/PR37)
          Length = 294

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
 Frame = +1

Query: 160 PVELRKGANGLDKVVLRQGPRISAEVYLYGGHVTSWKDQFGEELLFVSNKAIFKPPKAIR 339
           PV  R+  + LD +V+   P++ A   L G H+ SWK    EE+L++SN   FK   AIR
Sbjct: 16  PVLSRRKLDELDLIVVDH-PQVKASFALQGAHLLSWKPAGEEEVLWLSNNTPFKNGVAIR 74

Query: 340 GGIPICFPQFSNFGH--LEAHGFARNKIWXXXXXXXXXXXXISSRAYIDLILKPTDEDLK 513
           GG+P+C+P F       L AHGFARN  W             +    +   L  ++E  K
Sbjct: 75  GGVPVCWPWFGPAAQQGLPAHGFARNLPWTLKSHHED-----ADGVALTFELTQSEETKK 129

Query: 514 IWPHSFEYRLRIALGPGGDLMLTS 585
            WPH F       +G   ++ L S
Sbjct: 130 FWPHDFTLLAHFRVGKTCEIDLES 153

>YMY9_YEAST (Q03161) Hypothetical UPF0010 protein YMR099c|
          Length = 297

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
 Frame = +1

Query: 226 SAEVYLYGGHVTSWKDQFGEELLFVSNKAIFKPPKAIRGGIPICFPQF------SNFGHL 387
           S  +  YG  V SWK +  EE L++S  A     K +RGGIP+ FP F       +   L
Sbjct: 21  SVHILKYGATVYSWKLK-SEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSKL 79

Query: 388 EAHGFARNKIWXXXXXXXXXXXXISSRAYIDLILKP---TDEDLKIWPHSFEYRLRIALG 558
             HG ARN  W              +   +   LKP     E  K+WP   +Y L + + 
Sbjct: 80  PQHGLARNSTWEFLGQTK------ENPPTVQFGLKPEIANPELTKLWP--MDYLLILTVE 131

Query: 559 PGGDLMLTS-RIRNTNA 606
            G D + T+  + NT++
Sbjct: 132 LGSDYLKTAIEVENTSS 148

>Y1317_HAEIN (P44160) Hypothetical UPF0010 protein HI1317|
          Length = 271

 Score = 42.7 bits (99), Expect = 9e-04
 Identities = 20/46 (43%), Positives = 29/46 (63%)
 Frame = +1

Query: 283 EELLFVSNKAIFKPPKAIRGGIPICFPQFSNFGHLEAHGFARNKIW 420
           +++L++S    FK   AIRGG+PIC+P F       AHG AR ++W
Sbjct: 53  QDVLWLSEVEPFKNGNAIRGGVPICYPWFGGVKQ-PAHGTARIRLW 97

>DYHA_CHLRE (Q39610) Dynein alpha chain, flagellar outer arm (DHC alpha)|
          Length = 4499

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = +1

Query: 4   ACPVLSRPFPEEFPNSKRSLSSHP---PHSLARSLPAAIP---RPGMSSSGAGEEGPLPV 165
           +CP  SRP+    P    ++S+ P   P +   + PAA P    P    +  GEEG +P 
Sbjct: 641 SCPSESRPYIRH-PKGAAAVSAEPSAEPAAEPAAEPAAEPDADAPAAEPAAEGEEGAVPA 699

Query: 166 ELRKGANG 189
           E  +GA G
Sbjct: 700 EGEEGAEG 707

>YBOX1_RAT (P62961) Nuclease sensitive element-binding protein 1|
           (Y-box-binding protein 1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)
          Length = 321

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 49  SKRSLSSHPPHSLARSLPAAIPRPGMSSSGAGEEGPLPVELRKGANGLDKVV 204
           S  + +  PP + A +L AA  +PG + SGAG  GP  +     A G  KV+
Sbjct: 1   SSEAETQQPPAAPAAALSAADTKPGSTGSGAGSGGPGGLTSAAPAGGDKKVI 52

>YBOX1_MOUSE (P62960) Nuclease sensitive element-binding protein 1|
           (Y-box-binding protein 1) (Y-box transcription factor)
           (YB-1) (CCAAT-binding transcription factor I subunit A)
           (CBF-A) (Enhancer factor I subunit A) (EFI-A)
           (DNA-binding protein B) (DBPB)
          Length = 321

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 49  SKRSLSSHPPHSLARSLPAAIPRPGMSSSGAGEEGPLPVELRKGANGLDKVV 204
           S  + +  PP + A +L AA  +PG + SGAG  GP  +     A G  KV+
Sbjct: 1   SSEAETQQPPAAPAAALSAADTKPGSTGSGAGSGGPGGLTSAAPAGGDKKVI 52

>K1688_MOUSE (P59281) Protein KIAA1688|
          Length = 1107

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -3

Query: 245 YRYTSAEMRGPWRSTTLSS--PLAPLRSSTGNGPSSPAPDDDMPGRGMAAGSERASE*GG 72
           Y Y++A  R  W         PLA L++   N  S  A  D+ PGRG   GS  +S    
Sbjct: 81  YYYSAASQRTVWHRPQNCDIIPLAKLQTLKQNTESPRASADNSPGRGSRDGSTGSSLEPE 140

Query: 71  CEER 60
            EER
Sbjct: 141 LEER 144

>FBX46_HUMAN (Q6PJ61) F-box only protein 46 (F-box only protein 34-like)|
          Length = 646

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +1

Query: 1   TACPVLSRPFPEEFPNSKRSLSSHPPHSLARSLPAAIPRPGMSSSGAGEEG 153
           +ACP    P     P+   + S + P +LA  +PA+ P P +S++ AG+EG
Sbjct: 35  SACP---EPGGGAEPDHGPAHSENTPPALATEVPASQPAPLLSAAAAGDEG 82

>GAG_BAEVM (P03341) Gag polyprotein [Contains: Inner coat protein p12; Core|
           protein p15; Core shell protein p30; Nucleoprotein p10]
          Length = 536

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -3

Query: 251 PPYRYTSAEMRGPWRSTTLSSPLAPLRSSTGNGPSSPAPDDDMP 120
           PPY   S  +  P   TT S+P      S+   PSSPAP +  P
Sbjct: 154 PPYNSPSPPVLSPVSPTTPSAPTPSSLVSSSTPPSSPAPPELTP 197

>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein|
           phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat
           protein phosphatase) (Pleckstrin homology
           domain-containing family E protein 1) (Suprachiasmatic
           nucleus circadian oscillatory
          Length = 1687

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 263 DVTWPPYRYTSAEMRGPWRSTTLSSPLAPLRSSTGNGPS-SPAPDDDMPGRGMAAG 99
           DV  PP   T   +RGP R+     PL P  + T   P  SPAP D  PG   A G
Sbjct: 247 DVEPPPSSGTVGAVRGPARAPPADLPL-PGGAWTRCAPRISPAPSDSSPGELFAGG 301

>DUET_HUMAN (Q9Y2A5) Serine/threonine-protein kinase Duet (EC 2.7.11.1)|
           (Serine/threonine kinase with Dbl- and pleckstrin
           homology domain)
          Length = 1289

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -3

Query: 248 PYRYTSAEMRGPWRSTTLSSPLAPLRSSTGNGPSSPAPDDDMPGRGMAAGSERASE*GGC 69
           PY    A    P + ++ + PL PL+ ST NG  SP  +   PG    A  +  ++ GGC
Sbjct: 568 PYSSVPAGSEKPPKGSSYNPPLPPLKISTSNG--SPGFEYHQPGDKFEASKQ--NDLGGC 623

>PANK1_MOUSE (Q8K4K6) Pantothenate kinase 1 (EC 2.7.1.33) (Pantothenic acid|
           kinase 1) (mPank1) (mPank)
          Length = 548

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 219 GALAEHDLVEPVGALAELHGQRALLAGPRRRHARPRDGSRERAS 88
           GA    D+  P G   E  G +   A PR R ++P+ GS +R +
Sbjct: 34  GAQLAEDVGTPTGGGEERRGHQLPTAAPRLRESKPQGGSEDRGT 77

>TBX1_MOUSE (P70323) T-box transcription factor TBX1 (T-box protein 1)|
           (Testis-specific T-box protein)
          Length = 479

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = +1

Query: 64  SSHPPHSLARSLPAAIPRPG----MSSSGAGEEGPLPVELRKGANGLDKVVLRQGPRISA 231
           ++HPP  LAR L  A+P PG    +     G   P   +LR  A G  + +     +  A
Sbjct: 346 ATHPPQLLARVLSPALPGPGGLVPLPGGSGGRHSPPHADLRLEAPGASEPLHHHPYKYPA 405

Query: 232 EVY 240
             Y
Sbjct: 406 AAY 408

>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein)
          Length = 487

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
 Frame = -3

Query: 251 PPYRYTSAEM--RGPWRSTTLSSPLAPLRSSTGNGPSSPAPDD-------DMPGR 114
           PP   TS++   R P R+ +L+SP  PL S   +GP  P P +       D PGR
Sbjct: 305 PPLPPTSSDEIPRLPQRNLSLTSPTPPLPSPGRSGPLPPPPTERPPPPVRDPPGR 359

>PTSS2_CRIGR (O08888) Phosphatidylserine synthase 2 (EC 2.7.8.-) (PtdSer|
           synthase 2) (PSS-2) (Serine-exchange enzyme II)
          Length = 474

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -3

Query: 260 VTWPPYRYTSAEMRGPWRSTTLSSPLAPLRSSTGNGPSSPAPDDDMPGRGMA 105
           +TW  +R+   ++   ++ T      +    +  NG   P PDDD+ G G A
Sbjct: 402 LTWTVWRFFLRDITMRYKETRRQKQQSHQGRAINNGDGHPGPDDDLLGTGTA 453

>PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phosphatase (EC|
           3.1.3.16) (Pleckstrin homology domain-containing family
           E protein 1) (Suprachiasmatic nucleus circadian
           oscillatory protein)
          Length = 1696

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 263 DVTWPPYRYTSAEMRGPWRSTTLSSPLAPLRSSTGNGPS-SPAPDDDMPGRGMAAG 99
           DV  PP   T   +RGP R+     PL P  + T   P  +PAP D  PG   A G
Sbjct: 246 DVEPPPSSSTVGAVRGPARAPPADLPL-PGGAWTRCAPRVNPAPSDSSPGELFAGG 300

>PLDP1_ARATH (Q9LRZ5) Phospholipase D p1 (EC 3.1.4.4) (AtPLDp1) (Phospholipase|
           D1 PHOX and PX containing domain) (Phospholipase D zeta
           1) (PLDzeta1)
          Length = 1096

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 202 VLRQGPRISAEVYLYGGHVTSWKDQFGEELLFVSNKAIFKPPKAIRGGIPICFPQFSNFG 381
           VLR     S+ VYL+  H         E+L+ V N+  F       GG+ +CF ++  F 
Sbjct: 465 VLRYPDHFSSGVYLWSHH---------EKLVIVDNQVCFI------GGLDLCFGRYDTFE 509

Query: 382 H 384
           H
Sbjct: 510 H 510

>KDTA_CHLTR (P0C0Z9) 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-)|
           (KDO transferase)
          Length = 431

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 217 PRISAEVYLYGGHVTSWKDQFGEELLFVSNK 309
           PRI  +V+ +G ++ SWK +FG +  FV  +
Sbjct: 24  PRIFYKVFFHGKYIDSWKIRFGVQKPFVKGE 54

>KDTA_CHLTA (Q3KMF4) 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-)|
           (KDO transferase)
          Length = 431

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 217 PRISAEVYLYGGHVTSWKDQFGEELLFVSNK 309
           PRI  +V+ +G ++ SWK +FG +  FV  +
Sbjct: 24  PRIFYKVFFHGKYIDSWKIRFGVQKPFVKGE 54

>Y4762_ARATH (Q8RY73) Protein At4g17620, chloroplast precursor|
          Length = 544

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -3

Query: 170 SSTGNGPSSPAPDDDMPGRGMAAGSERASE*GGCEERDLFELGNSSGKGRDRTG 9
           SS+GN  SS +          AAG +   + GG +     + G+ S  G++  G
Sbjct: 30  SSSGNASSSSSSSSSSSSSSSAAGGDGEGDGGGADSGSASDSGSGSSGGKEEHG 83

>KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin)
          Length = 516

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = -3

Query: 251 PPYRYTSAEMRGPWRSTTLSSPL--APLRSSTGNGPSSPAPD--DDMPGRGMAAGSERAS 84
           PPY+   A  + P R +  S P   AP     G GPS    D      GRG A GS++  
Sbjct: 127 PPYQ--RAARKDPPRRSEPSKPANRAPGNDRGGRGPSDRRGDARSGGGGRGGARGSDKDK 184

Query: 83  E*GGCEERD 57
             GG  ++D
Sbjct: 185 NRGGKSDKD 193

>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)|
          Length = 268

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +1

Query: 10  PVLSRPFPEEFPNSKRSLSS--HPPHSLARSLPAAIPRPGMSSSGAGEEGPLPV 165
           PVLS P P   P + RS +   HPP     S P+  P P  S S +      P+
Sbjct: 131 PVLSSPPPPPSPPTPRSSTPIPHPPRRSLPSPPSPSPSPSPSPSPSPSPRSTPI 184

>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 23/55 (41%), Positives = 28/55 (50%)
 Frame = -3

Query: 299 TKSSSSPN*SFHDVTWPPYRYTSAEMRGPWRSTTLSSPLAPLRSSTGNGPSSPAP 135
           T SSS+   S   VT      +SA +  P  STT SS  AP+ SST    S+P P
Sbjct: 460 TPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSS-APVTSSTTESSSAPVP 513

>MYRB_MICGR (P43433) Mycinamicin-resistance protein myrB (EC 2.1.1.-)|
          Length = 311

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 182 APLRSSTGNGPSSPAPDDDMPGRGMAAGSERASE*GG 72
           AP   S    P S  PD  +P RG+ +G  RA   GG
Sbjct: 273 APAGRSVRARPGSVGPDRSLPPRGLRSGPPRARRRGG 309


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,853,328
Number of Sequences: 219361
Number of extensions: 1940787
Number of successful extensions: 8412
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 7757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8385
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)