ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart53g04 |
|---|---|
| Clone Library Name | barley_pub |
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 32.7 bits (73), Expect = 0.43 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 6/86 (6%) Frame = +2 Query: 14 YPSPSPCLLHSRSRGGLLVPRVRPTK-YAEPTLARARP----PAR-FVPSPLTTKSFPWT 175 Y P P ++S S P+V+P Y+ P +P P+R P P T + P T Sbjct: 183 YAQPPPTPIYSPS------PQVQPPPTYSPPPPTHVQPTPSPPSRGHQPQPPTHRHAPPT 236 Query: 176 HRYASSVDRPWPRTESPTESEQEAMP 253 HR+A +P P P ++ P Sbjct: 237 HRHAPPTHQPSPLRHLPPSPRRQPQP 262
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 32.0 bits (71), Expect = 0.73 Identities = 29/98 (29%), Positives = 35/98 (35%), Gaps = 22/98 (22%) Frame = +2 Query: 47 RSRGGLLVPRVRPTKYAEPTLARARPPARFVPSPLTTKS-FPWTHRYASSVD-------- 199 RSR PR RP+ P+ R PP R P P +S P R SS Sbjct: 301 RSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSS 360 Query: 200 ----------RPWPRTESPTESEQEAMPL---PRGKHR 274 +P RT SP + P PR +HR Sbjct: 361 SSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHR 398 Score = 30.8 bits (68), Expect = 1.6 Identities = 24/85 (28%), Positives = 31/85 (36%) Frame = +2 Query: 20 SPSPCLLHSRSRGGLLVPRVRPTKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVD 199 SPSP R P P + PP R PSP + P RY+ + Sbjct: 561 SPSPPPARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQ 620 Query: 200 RPWPRTESPTESEQEAMPLPRGKHR 274 R + + SP + A P P K R Sbjct: 621 RRY--SPSPPPKRRTASPPPPPKRR 643
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 31.6 bits (70), Expect = 0.95 Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 17/96 (17%) Frame = +2 Query: 17 PSPSPCLLHSRSRGGLLVPRVRPTKYAE--------PTLARARPPARFVPSP-LTTKSFP 169 P+P+ SR GGLL P R +Y E TL R PPA P + P Sbjct: 276 PAPASAPAPSRPGGGLLPPGARILEYLEGVREANLAKTLERPEPPAGMASPPGRSPHRLP 335 Query: 170 WTHRYASSV--------DRPWPRTESPTESEQEAMP 253 R S++ P PR ++ T++ E P Sbjct: 336 KDQRPKSALAGASKRKRANPRPRPQTQTQAPAEEAP 371
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 31.6 bits (70), Expect = 0.95 Identities = 29/98 (29%), Positives = 35/98 (35%), Gaps = 22/98 (22%) Frame = +2 Query: 47 RSRGGLLVPRVRPTKYAEPTLARARPPARFVPSPLTTKS-FPWTHRYASSVD-------- 199 RSR PR RP+ P+ R PP R P P +S P R SS Sbjct: 303 RSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSS 362 Query: 200 ----------RPWPRTESPTESEQEAMPL---PRGKHR 274 +P RT SP + P PR +HR Sbjct: 363 SSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHR 400 Score = 31.2 bits (69), Expect = 1.2 Identities = 29/86 (33%), Positives = 35/86 (40%) Frame = +2 Query: 17 PSPSPCLLHSRSRGGLLVPRVRPTKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSV 196 PSP P RS PR R T PT PP R PSP + P RY+ + Sbjct: 550 PSPPPTR-RRRSPSPAPPPRRRRT----PT----PPPRRRTPSPPPRRRSPSPRRYSPPI 600 Query: 197 DRPWPRTESPTESEQEAMPLPRGKHR 274 R + + SP + A P P K R Sbjct: 601 QRRY--SPSPPPKRRTASPPPPPKRR 624
>SEM1A_DROME (Q24322) Semaphorin-1A precursor (Semaphorin-I) (Sema I)| Length = 850 Score = 31.6 bits (70), Expect = 0.95 Identities = 18/53 (33%), Positives = 24/53 (45%) Frame = +2 Query: 23 PSPCLLHSRSRGGLLVPRVRPTKYAEPTLARARPPARFVPSPLTTKSFPWTHR 181 PS C + + L+P+V YAEP L PP + SP T P H+ Sbjct: 662 PSSCRIQQEPK---LLPQVEEVTYAEPVLLPQPPPPNKMHSPKNTLRKPPMHQ 711
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 31.6 bits (70), Expect = 0.95 Identities = 29/98 (29%), Positives = 35/98 (35%), Gaps = 22/98 (22%) Frame = +2 Query: 47 RSRGGLLVPRVRPTKYAEPTLARARPPARFVPSPLTTKS-FPWTHRYASSVD-------- 199 RSR PR RP+ P+ R PP R P P +S P R SS Sbjct: 303 RSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSS 362 Query: 200 ----------RPWPRTESPTESEQEAMPL---PRGKHR 274 +P RT SP + P PR +HR Sbjct: 363 SSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHR 400 Score = 31.2 bits (69), Expect = 1.2 Identities = 29/86 (33%), Positives = 35/86 (40%) Frame = +2 Query: 17 PSPSPCLLHSRSRGGLLVPRVRPTKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSV 196 PSP P RS PR R T PT PP R PSP + P RY+ + Sbjct: 564 PSPPPTR-RRRSPSPAPPPRRRRT----PT----PPPRRRTPSPPPRRRSPSPRRYSPPI 614 Query: 197 DRPWPRTESPTESEQEAMPLPRGKHR 274 R + + SP + A P P K R Sbjct: 615 QRRY--SPSPPPKRRTASPPPPPKRR 638
>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1404 Score = 30.8 bits (68), Expect = 1.6 Identities = 19/64 (29%), Positives = 27/64 (42%) Frame = +2 Query: 71 PRVRPTKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVDRPWPRTESPTESEQEAM 250 P K PT ++ P P+P TTKS P T P+ SPT +++ A Sbjct: 514 PSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTT-----------PKEPSPTTTKEPAP 562 Query: 251 PLPR 262 P+ Sbjct: 563 TTPK 566 Score = 28.9 bits (63), Expect = 6.2 Identities = 18/64 (28%), Positives = 27/64 (42%) Frame = +2 Query: 71 PRVRPTKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVDRPWPRTESPTESEQEAM 250 P K PT ++ P P+P TTKS P T P+ +PT +++ A Sbjct: 358 PASTTPKEPTPTTIKSAPTTPKEPAPTTTKSAPTT-----------PKEPAPTTTKEPAP 406 Query: 251 PLPR 262 P+ Sbjct: 407 TTPK 410
>NIPA_HUMAN (Q86WB0) Nuclear-interacting partner of ALK (Nuclear-interacting| partner of anaplastic lymphoma kinase) (hNIPA) (Zinc finger C3HC-type protein 1) Length = 502 Score = 30.8 bits (68), Expect = 1.6 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = +2 Query: 71 PRVRPTKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVDRPWPRTESPT 229 PR T+ + T + A P P+ +++ W +S VDRP P SPT Sbjct: 322 PRRMMTRSQDATFSPGSEQAEKSPGPIVSRTRSWDS--SSPVDRPEPEAASPT 372
>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2| Length = 964 Score = 30.8 bits (68), Expect = 1.6 Identities = 21/64 (32%), Positives = 26/64 (40%) Frame = +2 Query: 71 PRVRPTKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVDRPWPRTESPTESEQEAM 250 PR K AEP A A PA P P P A +P P+ E E++ E Sbjct: 97 PRAEAPKPAEPAPAPAAAPAEAKPEPK-----PEPKVEAKPEPKPEPKPEPKVEAKPEPK 151 Query: 251 PLPR 262 P P+ Sbjct: 152 PEPK 155
>STRC_MOUSE (Q8VIM6) Stereocilin precursor| Length = 1809 Score = 30.4 bits (67), Expect = 2.1 Identities = 18/58 (31%), Positives = 22/58 (37%) Frame = +2 Query: 62 LLVPRVRPTKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVDRPWPRTESPTES 235 LL ++P P PP P P TT+ P T + RP P T P S Sbjct: 369 LLCQHIKPATPRPPPTTPRPPPTTPQPPPTTTQPIPDTTQPPPVTPRPPPTTPQPPPS 426 Score = 29.6 bits (65), Expect = 3.6 Identities = 27/95 (28%), Positives = 34/95 (35%), Gaps = 16/95 (16%) Frame = +2 Query: 17 PSPSPCLLHSRSRGGLLVPRVRPTKYAEPTLARA-------------RPP---ARFVPSP 148 P P P LLH SRG L +P + P RA PP + F Sbjct: 310 PPPPPALLHCLSRGVPLPRASQPAAHISPRQRRAISVEALCENHSGPEPPYSISNFSIYL 369 Query: 149 LTTKSFPWTHRYASSVDRPWPRTESPTESEQEAMP 253 L P T R + RP P T P + + +P Sbjct: 370 LCQHIKPATPRPPPTTPRPPPTTPQPPPTTTQPIP 404
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.4 bits (67), Expect = 2.1 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 19/94 (20%) Frame = +2 Query: 17 PSPSPCLLHSRSRGGLLVPRVRPTKYAE--------PTLARARPPARFVPSP-LTTKSFP 169 P+P+ SR GGLL P R +Y E TL R PPA P + P Sbjct: 276 PAPASAPAPSRPGGGLLPPGARILEYLEGVREANLAKTLERPEPPAGMASPPGRSPHRLP 335 Query: 170 WTHRYASSV----------DRPWPRTESPTESEQ 241 R S++ RP P+T++ +E+ Sbjct: 336 KDQRPKSALAGASKRKRANPRPIPQTQTQAPAEE 369
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.4 bits (67), Expect = 2.1 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 19/94 (20%) Frame = +2 Query: 17 PSPSPCLLHSRSRGGLLVPRVRPTKYAE--------PTLARARPPARFVPSP-LTTKSFP 169 P+P+ SR GGLL P R +Y E TL R PPA P + P Sbjct: 276 PAPASAPAPSRPGGGLLPPGARILEYLEGVREANLAKTLERPEPPAGMASPPGRSPHRLP 335 Query: 170 WTHRYASSV----------DRPWPRTESPTESEQ 241 R S++ RP P+T++ +E+ Sbjct: 336 KDQRPKSALAGASKRKRANPRPIPQTQTQAPAEE 369
>LCFA_BACSU (P94547) Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (Long-chain| acyl-CoA synthetase) Length = 560 Score = 30.4 bits (67), Expect = 2.1 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = +2 Query: 143 SPLTTKSFPWTHRYASSVDRPWPRTESPTESEQE---AMPLPRGKHRRKG 283 SP+T +F W S+ PWP T++ SE+ A P G+ KG Sbjct: 361 SPVTHANFIWGKNKPGSIGCPWPSTDAAIYSEETGELAAPYEHGEIIVKG 410
>DAG1_RABIT (Q28685) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 30.0 bits (66), Expect = 2.8 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = +2 Query: 86 TKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVDRPWPRTESPTESEQEAM 250 T PT A PP+R VP+P + P T A V P P + T + A+ Sbjct: 322 TAIGPPTTAIQEPPSRIVPTPTSPAIAPPTETMAPPVRDPVPGKPTVTTRTRGAI 376
>BUR1_CANAL (Q9Y7W4) Serine/threonine-protein kinase BUR1 (EC 2.7.11.22) (EC| 2.7.11.23) Length = 746 Score = 30.0 bits (66), Expect = 2.8 Identities = 21/56 (37%), Positives = 24/56 (42%) Frame = +2 Query: 77 VRPTKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVDRPWPRTESPTESEQE 244 +R T EP ARAR P PLT+ S SV+RP E PT E Sbjct: 563 IRTTTDVEPPRARARRPTDMFGRPLTSNSTQAQPTRNKSVERP-KDLEKPTNGVTE 617
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 30.0 bits (66), Expect = 2.8 Identities = 26/90 (28%), Positives = 33/90 (36%), Gaps = 9/90 (10%) Frame = +2 Query: 17 PSPSPCLLHSRSRGGLLVPRVRPTKYAEPTLARARPP---------ARFVPSPLTTKSFP 169 P P P S + L P PT A PT PP A PSPL + P Sbjct: 503 PIPLPQAAPSNPKIPLTTPSPSPTAAAAPTTTTLSPPPTQQQPPQSAAPAPSPLLPQQQP 562 Query: 170 WTHRYASSVDRPWPRTESPTESEQEAMPLP 259 T A + P+ + P + + PLP Sbjct: 563 -TPSAAPAPSPLLPQQQPPPSAARAPSPLP 591
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 30.0 bits (66), Expect = 2.8 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 9/94 (9%) Frame = +2 Query: 29 PCLLHSRSRGGLLVPRVRPTKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVDRPW 208 P +L S+ + V P K +++ PP +PL +K+ P + V P Sbjct: 689 PAILSSQVQAQAQVTTAPPLKTDSAKTSQSFPPTGDTITPLDSKAMPRPASDSKIVSHPG 748 Query: 209 PRTES---------PTESEQEAMPLPRGKHRRKG 283 P +ES P +++ + P P K KG Sbjct: 749 PTSESKDPVQKKEEPKKAQTKVTPKPDTKPVPKG 782
>DAG1_CANFA (Q9TSZ6) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 892 Score = 29.6 bits (65), Expect = 3.6 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = +2 Query: 86 TKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVDRPWP 211 T PT A PP+R VP+P + P T A V P P Sbjct: 319 TAIGPPTTAIQEPPSRIVPTPTSPAIAPPTETMAPPVRDPVP 360
>DAG1_MOUSE (Q62165) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 893 Score = 29.6 bits (65), Expect = 3.6 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = +2 Query: 86 TKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVDRPWP 211 T PT A PP+R VP+P + P T A V P P Sbjct: 320 TAIGPPTTAIQEPPSRIVPTPTSPAIAPPTETMAPPVRDPVP 361
>NIPA_PONPY (Q5R8V9) Nuclear-interacting partner of ALK (Nuclear-interacting| partner of anaplastic lymphoma kinase) (Zinc finger C3HC-type protein 1) Length = 502 Score = 29.6 bits (65), Expect = 3.6 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = +2 Query: 71 PRVRPTKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVDRPWPRTESPT 229 PR T+ + T A P P+ +++ W +S VDRP P SPT Sbjct: 322 PRRMMTRSQDATFFPGSEQAEKSPGPIVSRTRSWDS--SSPVDRPEPEAASPT 372
>DAG1_HUMAN (Q14118) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 29.6 bits (65), Expect = 3.6 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = +2 Query: 86 TKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVDRPWP 211 T PT A PP+R VP+P + P T A V P P Sbjct: 322 TAIGPPTTAIQEPPSRIVPTPTSPAIAPPTETMAPPVRDPVP 363
>DAG1_BOVIN (O18738) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 29.6 bits (65), Expect = 3.6 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = +2 Query: 86 TKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVDRPWP 211 T PT A PP+R VP+P + P T A V P P Sbjct: 322 TAIGPPTTAIQEPPSRIVPTPTSPAIAPPTETMAPPVRDPVP 363
>BCCP_SOYBN (Q42783) Biotin carboxyl carrier protein of acetyl-CoA carboxylase,| chloroplast precursor (BCCP) Length = 262 Score = 29.6 bits (65), Expect = 3.6 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = +2 Query: 17 PSPSPCLLHSRSRGGLLVPRVRPTKYAEPTLARARPPARFVPSPLTTKS 163 P+P P +++S L P V P PTLARA P P+ + KS Sbjct: 136 PAPQPSVVYSPPPPALPPPPV-PASTPAPTLARATPTPTSAPAVKSAKS 183
>PRELP_RAT (Q9EQP5) Prolargin precursor (Proline-arginine-rich end| leucine-rich repeat protein) Length = 377 Score = 29.3 bits (64), Expect = 4.7 Identities = 15/38 (39%), Positives = 16/38 (42%) Frame = +2 Query: 113 RARPPARFVPSPLTTKSFPWTHRYASSVDRPWPRTESP 226 R +P R P P T SFP H A D P P P Sbjct: 24 RPKPGIRRKPKPRPTPSFPQPHEPAEPTDLPPPLPPGP 61
>TRA_STRLI (P22409) Protein tra| Length = 621 Score = 29.3 bits (64), Expect = 4.7 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = +2 Query: 101 PTLARARPPARFVPSPLTTKSFPWTHRYASSVDRP-WPRTESPTESEQEAMPLP 259 P +A R + P P+ T++F A DRP W R ESP S + P P Sbjct: 485 PGVAMLRSGPKVQPHPINTRAFSPADVIALP-DRPVWRRQESPARSAGASAPAP 537
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 29.3 bits (64), Expect = 4.7 Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 23/109 (21%) Frame = +2 Query: 17 PSPSPCLLHSRSRGGLLVPRVRPTKYAEPTLARARPPA---------------RFVPSPL 151 PSPSP R R PR R + P R R P+ R PSP Sbjct: 524 PSPSP-----RKRQKEPSPRRRRRSPSPPPARRRRSPSPPPPPRRRRSPSLPRRRSPSPP 578 Query: 152 TTKSFPWTHRYASSVDR-------PWPRTES-PTESEQEAMPLPRGKHR 274 + P RY+ + R P RT S P ++ A P P+ K R Sbjct: 579 PRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPQSKRR 627
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 29.3 bits (64), Expect = 4.7 Identities = 22/87 (25%), Positives = 31/87 (35%) Frame = +2 Query: 17 PSPSPCLLHSRSRGGLLVPRVRPTKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSV 196 PSP P P R +Y++ + + + PP R + S P RYA Sbjct: 730 PSPPPRRRQYSDEPRSPSPPPRRRRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADDS 789 Query: 197 DRPWPRTESPTESEQEAMPLPRGKHRR 277 P P S+ P P + RR Sbjct: 790 RSPSPPPHRRRYSDDSRSPSPPPRRRR 816
>CIH1_COLLN (Q9P403) Intracellular hyphae protein 1 precursor| Length = 230 Score = 28.9 bits (63), Expect = 6.2 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Frame = +2 Query: 83 PTKYAEPTLARARPPARFVPSPLTTKSFPWTHRYASSVDRPW-PRTESPTESEQEAMPLP 259 PTK EP +P +P P+ P T V+ P+ P+ PT + + LP Sbjct: 39 PTKLPEPVEGPYKPKPPILPEPIKDNYKPKTPILPEHVEGPYKPKLPEPTTGDPKNNTLP 98
>CACB2_RAT (Q8VGC3) Voltage-dependent L-type calcium channel beta-2 subunit| (CAB2) (Calcium channel, voltage-dependent, beta 2 subunit) Length = 655 Score = 28.9 bits (63), Expect = 6.2 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%) Frame = +2 Query: 92 YAEPTLARARPPARFVPSPL-----TTKSFPWTHRYASS---------VDRPWPRTESPT 229 Y E PP+ +P+PL T + P + AS+ DR PR+ S Sbjct: 453 YLEAYWKATHPPSSNLPNPLLSRTLATSTLPLSPTLASNSQGSQGDQRTDRSAPRSASQA 512 Query: 230 ESEQEAMPLPRGKHR 274 E E P+ + +HR Sbjct: 513 EEEPCLEPVKKSQHR 527
>POLR_ELV (P35928) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1748 Score = 28.9 bits (63), Expect = 6.2 Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 10/92 (10%) Frame = +2 Query: 2 SLHVYPSP-------SPCLLHSRSR---GGLLVPRVRPTKYAEPTLARARPPARFVPSPL 151 +LH++P P LL S S L P P+ A P PPA+ P P Sbjct: 535 NLHLHPESFTLGWKRRPLLLDSHSSFLPSSCLQPPASPSIAAAP---HPLPPAQKPPRPP 591 Query: 152 TTKSFPWTHRYASSVDRPWPRTESPTESEQEA 247 TT P S P T+SP Q A Sbjct: 592 TTVPTPKPLASPSQTQAAQPATQSPPSIPQTA 623
>YNG2_CAEEL (Q21653) Hypothetical protein R02F2.2| Length = 1182 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/59 (27%), Positives = 28/59 (47%) Frame = +2 Query: 107 LARARPPARFVPSPLTTKSFPWTHRYASSVDRPWPRTESPTESEQEAMPLPRGKHRRKG 283 L R +F+PS + P + +S+ R + SE E+ P+P ++RR+G Sbjct: 207 LGHPRGVMQFIPSIRNDQFVPTSEIRRNSISRKSSVPDGFMTSEMESEPVPNVRNRRRG 265
>VP87_NPVOP (P17930) Capsid protein p87| Length = 624 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +2 Query: 140 PSPLTTKSFPWTHRYASSVDRPWPRTESPTESEQEAMPLP 259 P+PL + P T YA+ +P T + T ++Q + P P Sbjct: 267 PAPLQDQMPPQTPAYATPAQQPSQPTPAQTPAQQPSQPTP 306
>SORL_RABIT (Q95209) Sortilin-related receptor precursor (Sorting protein-related| receptor containing LDLR class A repeats) (SorLA) (SorLA-1) (Low-density lipoprotein receptor relative with 11 ligand-binding repeats) (LDLR relative with 11 ligand-binding Length = 2213 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 2/27 (7%) Frame = -3 Query: 276 LLCLPRGNGMAS--CSDSVGDSVLGQG 202 LLCLPR N S C D V SVL G Sbjct: 1027 LLCLPRANNSKSCRCPDGVASSVLPSG 1053
>CCAR1_MOUSE (Q8CH18) Cell division cycle and apoptosis regulator protein 1| (Cell cycle and apoptosis regulatory protein 1) (CARP-1) Length = 1146 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +2 Query: 23 PSPCLLHSRSRGGLLVPRVRPTKYAEPTLARARPPARF 136 P P L + + GLL P VR +P R PP+RF Sbjct: 262 PQPLLQQPQQKAGLLQPPVRIVSQPQPA-RRLDPPSRF 298
>CCAR1_HUMAN (Q8IX12) Cell division cycle and apoptosis regulator protein 1| (Cell cycle and apoptosis regulatory protein 1) (CARP-1) (Death inducer with SAP domain) Length = 1150 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +2 Query: 23 PSPCLLHSRSRGGLLVPRVRPTKYAEPTLARARPPARF 136 P P L + + GLL P VR +P R PP+RF Sbjct: 265 PQPLLQQPQQKAGLLQPPVRIVSQPQPA-RRLDPPSRF 301 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,851,095 Number of Sequences: 219361 Number of extensions: 653236 Number of successful extensions: 2281 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2267 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
