ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart53d12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein Length = 1225 Score = 133 bits (67), Expect = 6e-29 Identities = 70/71 (98%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 170 aaggagcccccgccggcgccgctgttcgagcccggcgagctcaagtcgtggtccttctac 229 Query: 61 cgcgccggcat 71 ||||||||||| Sbjct: 230 cgcgccggcat 240
>gb|BT018400.1| Zea mays clone EL01N0323H01.d mRNA sequence Length = 1154 Score = 109 bits (55), Expect = 9e-22 Identities = 67/71 (94%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 62 aaggagcccccgccggcgccgctgttcgagcccggggagctcaagtcctggtccttctac 121 Query: 61 cgcgccggcat 71 ||||| ||||| Sbjct: 122 cgcgcgggcat 132
>gb|AY243800.1| Zea mays plasma membrane intrinsic protein (PIP1-1) mRNA, complete cds Length = 1086 Score = 109 bits (55), Expect = 9e-22 Identities = 67/71 (94%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||||| Sbjct: 100 aaggagcccccgccggcgccgctcttcgagcccggggagctcaagtcctggtccttctac 159 Query: 61 cgcgccggcat 71 ||||||||||| Sbjct: 160 cgcgccggcat 170
>gb|AF326488.1|AF326488 Zea mays plasma membrane integral protein ZmPIP1-4 mRNA, complete cds Length = 1153 Score = 109 bits (55), Expect = 9e-22 Identities = 67/71 (94%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 212 aaggagcccccgccggcgccgctgttcgagcccggggagctcaagtcctggtccttctac 271 Query: 61 cgcgccggcat 71 ||||| ||||| Sbjct: 272 cgcgcgggcat 282
>gb|AF326487.1|AF326487 Zea mays plasma membrane integral protein ZmPIP1-3 mRNA, complete cds Length = 1296 Score = 109 bits (55), Expect = 9e-22 Identities = 67/71 (94%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 207 aaggagcccccgccggcgccgctgttcgagcccggggagctcaagtcctggtccttctac 266 Query: 61 cgcgccggcat 71 ||||| ||||| Sbjct: 267 cgcgcgggcat 277
>gb|AY103580.1| Zea mays PCO072544 mRNA sequence Length = 1633 Score = 109 bits (55), Expect = 9e-22 Identities = 67/71 (94%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 536 aaggagcccccgccggcgccgctgttcgagcccggggagctcaagtcctggtccttctac 595 Query: 61 cgcgccggcat 71 ||||| ||||| Sbjct: 596 cgcgcgggcat 606
>gb|AF131201.1| Zea mays plasma membrane MIP protein (pip1-2) mRNA, complete cds Length = 1280 Score = 109 bits (55), Expect = 9e-22 Identities = 67/71 (94%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| Sbjct: 163 aaggagcccccgccggcgccgctgttcgagcccggggagctcaagtcctggtccttctac 222 Query: 61 cgcgccggcat 71 ||||| ||||| Sbjct: 223 cgcgcgggcat 233
>emb|X82633.1|ZMTRAPRO Z.mays mRNA for transmembrane protein Length = 1169 Score = 101 bits (51), Expect = 2e-19 Identities = 66/71 (92%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||||| Sbjct: 160 aaggagcccccgccggcgccgctcttcgagcccggggagctcaagtcctggtccttctac 219 Query: 61 cgcgccggcat 71 ||| ||||||| Sbjct: 220 cgccccggcat 230
>dbj|AB009309.2| Hordeum vulgare HvPIP1;5 mRNA, complete cds Length = 1147 Score = 101 bits (51), Expect = 2e-19 Identities = 66/71 (92%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||| ||| ||||||| ||||||||||| |||||||||||| Sbjct: 185 aaggagccgccgccggcgccgctcttcgagcccggggagctcaagtcctggtccttctac 244 Query: 61 cgcgccggcat 71 ||||||||||| Sbjct: 245 cgcgccggcat 255
>emb|Y08962.1|OSTRAMBPR O.sativa mRNA for transmembrane protein Length = 1179 Score = 97.6 bits (49), Expect = 4e-18 Identities = 61/65 (93%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||| Sbjct: 165 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtccttctac 224 Query: 61 cgcgc 65 ||||| Sbjct: 225 cgcgc 229
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 97.6 bits (49), Expect = 4e-18 Identities = 61/65 (93%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||| Sbjct: 28020023 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtccttctac 28020082 Query: 61 cgcgc 65 ||||| Sbjct: 28020083 cgcgc 28020087 Score = 42.1 bits (21), Expect = 0.18 Identities = 45/53 (84%) Strand = Plus / Minus Query: 10 ccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctaccg 62 |||||||||||||||||| | |||||||||| | ||||||||||||||| Sbjct: 8907755 ccgccggcgccgctgttcgacgtcggcgagctccggctgtggtccttctaccg 8907703
>dbj|AK104736.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D02, full insert sequence Length = 1163 Score = 97.6 bits (49), Expect = 4e-18 Identities = 61/65 (93%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||| Sbjct: 159 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtccttctac 218 Query: 61 cgcgc 65 ||||| Sbjct: 219 cgcgc 223
>dbj|AK098849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E16, full insert sequence Length = 1164 Score = 97.6 bits (49), Expect = 4e-18 Identities = 61/65 (93%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||| Sbjct: 160 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtccttctac 219 Query: 61 cgcgc 65 ||||| Sbjct: 220 cgcgc 224
>dbj|AK065188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E02, full insert sequence Length = 1167 Score = 97.6 bits (49), Expect = 4e-18 Identities = 61/65 (93%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||| Sbjct: 162 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtccttctac 221 Query: 61 cgcgc 65 ||||| Sbjct: 222 cgcgc 226
>dbj|AK058323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B07, full insert sequence Length = 1462 Score = 97.6 bits (49), Expect = 4e-18 Identities = 61/65 (93%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||| Sbjct: 458 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtccttctac 517 Query: 61 cgcgc 65 ||||| Sbjct: 518 cgcgc 522
>gb|U77297.1|OSU77297 Oryza sativa transmembrane protein mRNA, complete cds Length = 1179 Score = 97.6 bits (49), Expect = 4e-18 Identities = 61/65 (93%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||| Sbjct: 165 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtccttctac 224 Query: 61 cgcgc 65 ||||| Sbjct: 225 cgcgc 229
>ref|XM_473480.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 89.7 bits (45), Expect = 9e-16 Identities = 60/65 (92%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || |||||||||||||||||| ||||| Sbjct: 81 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtccctctac 140 Query: 61 cgcgc 65 ||||| Sbjct: 141 cgcgc 145
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 89.7 bits (45), Expect = 9e-16 Identities = 60/65 (92%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || |||||||||||||||||| ||||| Sbjct: 27248 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtccctctac 27307 Query: 61 cgcgc 65 ||||| Sbjct: 27308 cgcgc 27312
>emb|AJ224327.1|OSAJ4327 Oryza sativa mRNA for aquaporin, complete CDS Length = 1139 Score = 87.7 bits (44), Expect = 3e-15 Identities = 62/68 (91%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || ||||||||||||||||| |||||| Sbjct: 127 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtctttctac 186 Query: 61 cgcgccgg 68 || ||||| Sbjct: 187 cgggccgg 194
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 87.7 bits (44), Expect = 3e-15 Identities = 62/68 (91%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || ||||||||||||||||| |||||| Sbjct: 27063047 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtctttctac 27063106 Query: 61 cgcgccgg 68 || ||||| Sbjct: 27063107 cgggccgg 27063114 Score = 38.2 bits (19), Expect = 2.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 10 ccgccggcgccgctgttccagcc 32 ||||||||| ||||||||||||| Sbjct: 8589833 ccgccggcggcgctgttccagcc 8589855
>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1486_E07 Length = 110494 Score = 87.7 bits (44), Expect = 3e-15 Identities = 62/68 (91%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || ||||||||||||||||| |||||| Sbjct: 34696 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtctttctac 34755 Query: 61 cgcgccgg 68 || ||||| Sbjct: 34756 cgggccgg 34763
>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461B08 Length = 153743 Score = 87.7 bits (44), Expect = 3e-15 Identities = 62/68 (91%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || ||||||||||||||||| |||||| Sbjct: 116249 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtctttctac 116308 Query: 61 cgcgccgg 68 || ||||| Sbjct: 116309 cgggccgg 116316
>dbj|AK109319.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-G11, full insert sequence Length = 1128 Score = 87.7 bits (44), Expect = 3e-15 Identities = 62/68 (91%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || ||||||||||||||||| |||||| Sbjct: 160 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtctttctac 219 Query: 61 cgcgccgg 68 || ||||| Sbjct: 220 cgggccgg 227
>dbj|AK104658.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D06, full insert sequence Length = 1128 Score = 87.7 bits (44), Expect = 3e-15 Identities = 62/68 (91%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || ||||||||||||||||| |||||| Sbjct: 160 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtctttctac 219 Query: 61 cgcgccgg 68 || ||||| Sbjct: 220 cgggccgg 227
>dbj|AK103807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147A07, full insert sequence Length = 1205 Score = 87.7 bits (44), Expect = 3e-15 Identities = 62/68 (91%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || ||||||||||||||||| |||||| Sbjct: 215 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtctttctac 274 Query: 61 cgcgccgg 68 || ||||| Sbjct: 275 cgggccgg 282
>dbj|AK061769.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C05, full insert sequence Length = 1136 Score = 87.7 bits (44), Expect = 3e-15 Identities = 62/68 (91%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || ||||||||||||||||| |||||| Sbjct: 160 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtctttctac 219 Query: 61 cgcgccgg 68 || ||||| Sbjct: 220 cgggccgg 227
>dbj|AB009665.1| Oryza sativa (japonica cultivar-group) mRNA for water channel protein, complete cds Length = 1116 Score = 87.7 bits (44), Expect = 3e-15 Identities = 62/68 (91%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| |||| || ||||||||||||||||| |||||| Sbjct: 158 aaggagccgccgccggcgccgctgttcgagccaggggagctcaagtcgtggtctttctac 217 Query: 61 cgcgccgg 68 || ||||| Sbjct: 218 cgggccgg 225
>gb|AF022737.1|AF022737 Oryza sativa transmembrane protein mRNA, complete cds Length = 1140 Score = 79.8 bits (40), Expect = 8e-13 Identities = 61/68 (89%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||| ||| |||| || ||||||||||||||||| |||||| Sbjct: 155 aaggagccgccgccggcgccgcttttcgagccaggggagctcaagtcgtggtctttctac 214 Query: 61 cgcgccgg 68 || ||||| Sbjct: 215 cgggccgg 222
>dbj|AB091106.2| Lilium longiflorum PIP1 mRNA for plasma membrane intrinsic protein, complete cds Length = 1145 Score = 77.8 bits (39), Expect = 3e-12 Identities = 63/71 (88%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| || ||||||||| | ||| ||||||| ||||||||||| |||||||||||| Sbjct: 193 aaggagccgccaccggcgccgtttttcgagcccggtgagctcaagtcatggtccttctac 252 Query: 61 cgcgccggcat 71 || |||||||| Sbjct: 253 cgtgccggcat 263
>emb|AJ271796.1|ZMA271796 Zea mays mRNA for plasma membrane intrinsic protein (pip4 gene) Length = 1364 Score = 63.9 bits (32), Expect = 5e-08 Identities = 59/68 (86%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| || | | ||||| | |||||||||||||||| Sbjct: 181 aaggagcctccgccggcgccgctgttcgaggcggaggagctgacgtcgtggtccttctac 240 Query: 61 cgcgccgg 68 || ||||| Sbjct: 241 cgggccgg 248
>gb|AF326489.1|AF326489 Zea mays plasma membrane integral protein ZmPIP1-5 mRNA, complete cds Length = 1338 Score = 63.9 bits (32), Expect = 5e-08 Identities = 59/68 (86%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 |||||||| |||||||||||||||||| || | | ||||| | |||||||||||||||| Sbjct: 172 aaggagcctccgccggcgccgctgttcgaggcggaggagctgacgtcgtggtccttctac 231 Query: 61 cgcgccgg 68 || ||||| Sbjct: 232 cgggccgg 239
>gb|AF326490.1|AF326490 Zea mays plasma membrane integral protein ZmPIP1-6 mRNA, complete cds Length = 1325 Score = 56.0 bits (28), Expect = 1e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 4 gagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctaccgc 63 ||||||||| |||||||||||||| || | |||||| |||||||||||||||||| Sbjct: 322 gagcccccggcggcgccgctgttcgaggcgtcggagctctcctcgtggtccttctaccgc 381 Query: 64 gccggcat 71 |||||||| Sbjct: 382 gccggcat 389
>gb|DQ149581.1| Xerophyta humilis PIP1 aquaporin mRNA, complete cds Length = 1262 Score = 56.0 bits (28), Expect = 1e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 4 gagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctaccgc 63 ||||| || ||||| ||| |||| ||||||||||||| | |||||||| ||||||||| Sbjct: 185 gagccgccaccggcaccgttgtttgagcccggcgagctgagctcgtggtctttctaccgc 244 Query: 64 gccggcat 71 |||||||| Sbjct: 245 gccggcat 252
>gb|AY547266.2| Ipomoea nil aquaporin-like protein (AQP1) mRNA, complete cds Length = 1189 Score = 54.0 bits (27), Expect = 5e-05 Identities = 51/59 (86%) Strand = Plus / Plus Query: 10 ccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctaccgcgccgg 68 |||||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||| Sbjct: 191 ccgccgacggcgctgttcgagcccagcgagctctcctcgtggtccttttaccgcgccgg 249
>gb|AF004293.1|AF004293 Brassica rapa aquaporin (MOD) mRNA, complete cds Length = 900 Score = 52.0 bits (26), Expect = 2e-04 Identities = 50/58 (86%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttct 58 |||||||| || || |||||| ||||| ||||||||||||| |||||||||||||| Sbjct: 112 aaggagccgcctcctgcgccgttgttcgagcccggcgagcttgcgtcgtggtccttct 169
>gb|U26537.1|MCU26537 Mesembryanthemum crystallinum major intrinsic protein homolog (mipD) mRNA, complete cds Length = 1135 Score = 50.1 bits (25), Expect = 7e-04 Identities = 46/53 (86%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtc 53 |||||||| || ||||||||||||||| |||| | ||||||||||| ||||| Sbjct: 155 aaggagccaccaccggcgccgctgttcgagccggatgagctcaagtcctggtc 207
>gb|AF255796.1|AF255796 Allium cepa aquaporin 2 (Aqp2) mRNA, complete cds Length = 1135 Score = 48.1 bits (24), Expect = 0.003 Identities = 27/28 (96%) Strand = Plus / Plus Query: 29 agcccggcgagctcaagtcgtggtcctt 56 ||||||| |||||||||||||||||||| Sbjct: 165 agcccggagagctcaagtcgtggtcctt 192
>ref|NM_202760.1| Arabidopsis thaliana TMP-C AT4G00430 (TMP-C) transcript variant AT4G00430.2 mRNA, complete cds Length = 1367 Score = 42.1 bits (21), Expect = 0.18 Identities = 39/45 (86%) Strand = Plus / Plus Query: 16 gcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||| |||||| ||||||||||||||| || ||||| |||||| Sbjct: 198 gcgccactgttcgagcccggcgagctcagctcatggtctttctac 242
>ref|NM_116268.2| Arabidopsis thaliana TMP-C; water channel AT4G00430 (TMP-C) transcript variant AT4G00430.1 mRNA, complete cds Length = 1643 Score = 42.1 bits (21), Expect = 0.18 Identities = 39/45 (86%) Strand = Plus / Plus Query: 16 gcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||| |||||| ||||||||||||||| || ||||| |||||| Sbjct: 198 gcgccactgttcgagcccggcgagctcagctcatggtctttctac 242
>ref|NM_188757.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 669 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 gccggcgccgctgttccagcc 32 ||||||||||||||||||||| Sbjct: 258 gccggcgccgctgttccagcc 238
>ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 42.1 bits (21), Expect = 0.18 Identities = 45/53 (84%) Strand = Plus / Plus Query: 10 ccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctaccg 62 |||||||||||||||||| | |||||||||| | ||||||||||||||| Sbjct: 61 ccgccggcgccgctgttcgacgtcggcgagctccggctgtggtccttctaccg 113
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence Length = 182756 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 gccggcgccgctgttccagcc 32 ||||||||||||||||||||| Sbjct: 4910 gccggcgccgctgttccagcc 4890
>gb|BT000330.1| Arabidopsis thaliana probable plasma membrane intrinsic protein 1c (At4g00430) mRNA, complete cds Length = 1331 Score = 42.1 bits (21), Expect = 0.18 Identities = 39/45 (86%) Strand = Plus / Plus Query: 16 gcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||| |||||| ||||||||||||||| || ||||| |||||| Sbjct: 112 gcgccactgttcgagcccggcgagctcagctcatggtctttctac 156
>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06, complete sequence Length = 127420 Score = 42.1 bits (21), Expect = 0.18 Identities = 45/53 (84%) Strand = Plus / Minus Query: 10 ccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctaccg 62 |||||||||||||||||| | |||||||||| | ||||||||||||||| Sbjct: 92064 ccgccggcgccgctgttcgacgtcggcgagctccggctgtggtccttctaccg 92012
>emb|AL161471.2|ATCHRIV1 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 1 Length = 197119 Score = 42.1 bits (21), Expect = 0.18 Identities = 39/45 (86%) Strand = Plus / Minus Query: 16 gcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||| |||||| ||||||||||||||| || ||||| |||||| Sbjct: 186420 gcgccactgttcgagcccggcgagctcagctcatggtctttctac 186376
>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10 Length = 150379 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 gccggcgccgctgttccagcc 32 ||||||||||||||||||||| Sbjct: 37448 gccggcgccgctgttccagcc 37428
>gb|AY120785.1| Arabidopsis thaliana probable plasma membrane intrinsic protein 1c (At4g00430) mRNA, complete cds Length = 1083 Score = 42.1 bits (21), Expect = 0.18 Identities = 39/45 (86%) Strand = Plus / Plus Query: 16 gcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||| |||||| ||||||||||||||| || ||||| |||||| Sbjct: 190 gcgccactgttcgagcccggcgagctcagctcatggtctttctac 234
>gb|AY099825.1| Arabidopsis thaliana probable plasma membrane intrinsic protein 1c (At4g00430) mRNA, complete cds Length = 1631 Score = 42.1 bits (21), Expect = 0.18 Identities = 39/45 (86%) Strand = Plus / Plus Query: 16 gcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||| |||||| ||||||||||||||| || ||||| |||||| Sbjct: 186 gcgccactgttcgagcccggcgagctcagctcatggtctttctac 230
>gb|BT006313.1| Arabidopsis thaliana At4g00430 mRNA, complete cds Length = 864 Score = 42.1 bits (21), Expect = 0.18 Identities = 39/45 (86%) Strand = Plus / Plus Query: 16 gcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||| |||||| ||||||||||||||| || ||||| |||||| Sbjct: 112 gcgccactgttcgagcccggcgagctcagctcatggtctttctac 156
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 gccggcgccgctgttccagcc 32 ||||||||||||||||||||| Sbjct: 8040797 gccggcgccgctgttccagcc 8040777
>emb|BX827573.1|CNS0A3MW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS77ZD01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1155 Score = 42.1 bits (21), Expect = 0.18 Identities = 39/45 (86%) Strand = Plus / Plus Query: 16 gcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||| |||||| ||||||||||||||| || ||||| |||||| Sbjct: 175 gcgccactgttcgagcccggcgagctcagctcatggtctttctac 219
>emb|BX829233.1|CNS0A3FQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL83ZB07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1000 Score = 42.1 bits (21), Expect = 0.18 Identities = 39/45 (86%) Strand = Plus / Plus Query: 16 gcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||| |||||| ||||||||||||||| || ||||| |||||| Sbjct: 173 gcgccactgttcgagcccggcgagctcagctcatggtctttctac 217
>dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B01, full insert sequence Length = 1067 Score = 42.1 bits (21), Expect = 0.18 Identities = 45/53 (84%) Strand = Plus / Plus Query: 10 ccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctaccg 62 |||||||||||||||||| | |||||||||| | ||||||||||||||| Sbjct: 47 ccgccggcgccgctgttcgacgtcggcgagctccggctgtggtccttctaccg 99
>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full insert sequence Length = 1308 Score = 42.1 bits (21), Expect = 0.18 Identities = 45/53 (84%) Strand = Plus / Plus Query: 10 ccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctaccg 62 |||||||||||||||||| | |||||||||| | ||||||||||||||| Sbjct: 160 ccgccggcgccgctgttcgacgtcggcgagctccggctgtggtccttctaccg 212
>gb|AF195115.1|F5I10 Arabidopsis thaliana BAC F5I10 Length = 111906 Score = 42.1 bits (21), Expect = 0.18 Identities = 39/45 (86%) Strand = Plus / Minus Query: 16 gcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||| |||||| ||||||||||||||| || ||||| |||||| Sbjct: 86939 gcgccactgttcgagcccggcgagctcagctcatggtctttctac 86895
>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full insert sequence Length = 1309 Score = 42.1 bits (21), Expect = 0.18 Identities = 45/53 (84%) Strand = Plus / Plus Query: 10 ccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctaccg 62 |||||||||||||||||| | |||||||||| | ||||||||||||||| Sbjct: 154 ccgccggcgccgctgttcgacgtcggcgagctccggctgtggtccttctaccg 206
>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full insert sequence Length = 1296 Score = 42.1 bits (21), Expect = 0.18 Identities = 45/53 (84%) Strand = Plus / Plus Query: 10 ccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctaccg 62 |||||||||||||||||| | |||||||||| | ||||||||||||||| Sbjct: 148 ccgccggcgccgctgttcgacgtcggcgagctccggctgtggtccttctaccg 200
>dbj|D26609.1|ATHTMP Arabidopsis thaliana mRNA for transmembrane protein, complete cds Length = 1100 Score = 42.1 bits (21), Expect = 0.18 Identities = 39/45 (86%) Strand = Plus / Plus Query: 16 gcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||| |||||| ||||||||||||||| || ||||| |||||| Sbjct: 245 gcgccactgttcgagcccggcgagctcagctcatggtctttctac 289
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 0.18 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 gccgctgttccagcccggcga 38 ||||||||||||||||||||| Sbjct: 2522858 gccgctgttccagcccggcga 2522878
>gb|AF013293.1|IG005I10 Arabidopsis thaliana BAC IG005I10 Length = 111906 Score = 42.1 bits (21), Expect = 0.18 Identities = 39/45 (86%) Strand = Plus / Plus Query: 16 gcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||| |||||| ||||||||||||||| || ||||| |||||| Sbjct: 24968 gcgccactgttcgagcccggcgagctcagctcatggtctttctac 25012
>ref|NM_118469.2| Arabidopsis thaliana PIP1;5/PIP1D; water channel AT4G23400 (PIP1;5/PIP1D) mRNA, complete cds Length = 1128 Score = 40.1 bits (20), Expect = 0.71 Identities = 41/48 (85%) Strand = Plus / Plus Query: 13 ccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||| | ||| | |||||||||||||| || ||||| |||||| Sbjct: 158 ccggcgccgtttttcgaacccggcgagctcaaatcttggtctttctac 205
>emb|AL161559.2|ATCHRIV59 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 59 Length = 199199 Score = 40.1 bits (20), Expect = 0.71 Identities = 41/48 (85%) Strand = Plus / Plus Query: 13 ccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||| | ||| | |||||||||||||| || ||||| |||||| Sbjct: 74482 ccggcgccgtttttcgaacccggcgagctcaaatcttggtctttctac 74529
>emb|AL031326.1|ATF16G20 Arabidopsis thaliana DNA chromosome 4, BAC clone F16G20 (ESSAII project) Length = 97006 Score = 40.1 bits (20), Expect = 0.71 Identities = 41/48 (85%) Strand = Plus / Plus Query: 13 ccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||| | ||| | |||||||||||||| || ||||| |||||| Sbjct: 32950 ccggcgccgtttttcgaacccggcgagctcaaatcttggtctttctac 32997
>gb|AY081593.1| Arabidopsis thaliana water channel-like protein (At4g23400) mRNA, complete cds Length = 956 Score = 40.1 bits (20), Expect = 0.71 Identities = 41/48 (85%) Strand = Plus / Plus Query: 13 ccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||| | ||| | |||||||||||||| || ||||| |||||| Sbjct: 109 ccggcgccgtttttcgaacccggcgagctcaaatcttggtctttctac 156
>gb|AY059948.1| Arabidopsis thaliana water channel - like protein (At4g23400; F16G20.100) mRNA, complete cds Length = 1125 Score = 40.1 bits (20), Expect = 0.71 Identities = 41/48 (85%) Strand = Plus / Plus Query: 13 ccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||| | ||| | |||||||||||||| || ||||| |||||| Sbjct: 158 ccggcgccgtttttcgaacccggcgagctcaaatcttggtctttctac 205
>emb|BX827146.1|CNS0A2UM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZB08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1066 Score = 40.1 bits (20), Expect = 0.71 Identities = 41/48 (85%) Strand = Plus / Plus Query: 13 ccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||| | ||| | |||||||||||||| || ||||| |||||| Sbjct: 147 ccggcgccgtttttcgaacccggcgagctcaaatcttggtctttctac 194
>emb|BX827200.1|CNS0A2RC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS21ZB06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1078 Score = 40.1 bits (20), Expect = 0.71 Identities = 41/48 (85%) Strand = Plus / Plus Query: 13 ccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||| | ||| | |||||||||||||| || ||||| |||||| Sbjct: 122 ccggcgccgtttttcgaacccggcgagctcaaatcttggtctttctac 169
>gb|AF314656.1|AF314656 Brassica oleracea aquaporin (PIP3) mRNA, complete cds Length = 909 Score = 40.1 bits (20), Expect = 0.71 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 gagctcaagtcgtggtccttctac 60 ||||||||||||||||| |||||| Sbjct: 91 gagctcaagtcgtggtctttctac 114
>gb|AY087945.1| Arabidopsis thaliana clone 3982 mRNA, complete sequence Length = 1089 Score = 40.1 bits (20), Expect = 0.71 Identities = 41/48 (85%) Strand = Plus / Plus Query: 13 ccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||||||| | ||| | |||||||||||||| || ||||| |||||| Sbjct: 156 ccggcgccgtttttcgaacccggcgagctcaaatcttggtctttctac 203
>gb|AF139816.1|AF139816 Triticum aestivum plasma membrane intrinsic protein 3 (PIP3) mRNA, complete cds Length = 1271 Score = 40.1 bits (20), Expect = 0.71 Identities = 35/40 (87%) Strand = Plus / Plus Query: 32 ccggcgagctcaagtcgtggtccttctaccgcgccggcat 71 |||| ||||||| || |||||||||||||| |||||||| Sbjct: 210 ccggggagctcacctcctggtccttctaccgggccggcat 249
>dbj|AB100869.1| Malus x domestica MdPIP1a mRNA for plasma membrane intrinsic protein, complete cds Length = 1260 Score = 40.1 bits (20), Expect = 0.71 Identities = 50/60 (83%) Strand = Plus / Plus Query: 1 aaggagcccccgccggcgccgctgttccagcccggcgagctcaagtcgtggtccttctac 60 ||||| || ||||| || || |||||| ||||||||||||| | ||| ||||| |||||| Sbjct: 190 aaggaaccaccgcctgctccactgttcgagcccggcgagctgacgtcatggtcgttctac 249
>gb|AF366564.1| Triticum aestivum aquaporin PIP1 (Pip1) mRNA, complete cds Length = 1248 Score = 40.1 bits (20), Expect = 0.71 Identities = 35/40 (87%) Strand = Plus / Plus Query: 32 ccggcgagctcaagtcgtggtccttctaccgcgccggcat 71 |||| ||||||| || |||||||||||||| |||||||| Sbjct: 199 ccggggagctcacctcctggtccttctaccgggccggcat 238
>ref|XM_464857.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1537 Score = 38.2 bits (19), Expect = 2.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 10 ccgccggcgccgctgttccagcc 32 ||||||||| ||||||||||||| Sbjct: 1121 ccgccggcggcgctgttccagcc 1099
>gb|AY596538.1| Saccharum officinarum clone SCCCRZ2C04A03, complete sequence Length = 1227 Score = 38.2 bits (19), Expect = 2.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 4 gagcccccgccggcgccgctgtt 26 |||||||||||| |||||||||| Sbjct: 245 gagcccccgccgccgccgctgtt 223
>gb|AE009005.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 31 of 256 of the complete sequence Length = 10807 Score = 38.2 bits (19), Expect = 2.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 ctgttccagcccggcgagc 40 ||||||||||||||||||| Sbjct: 2883 ctgttccagcccggcgagc 2865
>ref|XM_542074.2| PREDICTED: Canis familiaris similar to intercellular adhesion molecule 5 precursor (LOC484958), mRNA Length = 2769 Score = 38.2 bits (19), Expect = 2.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 gagcccccgccggcgccgc 22 ||||||||||||||||||| Sbjct: 2681 gagcccccgccggcgccgc 2663
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 38.2 bits (19), Expect = 2.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 ctgttccagcccggcgagc 40 ||||||||||||||||||| Sbjct: 331493 ctgttccagcccggcgagc 331475
>gb|AF411228.1|AF411228 Hordeum vulgare ascorbate peroxidase mRNA, complete cds Length = 1138 Score = 38.2 bits (19), Expect = 2.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 10 ccgccggcgccgctgttccagcc 32 ||||||||||||||| ||||||| Sbjct: 55 ccgccggcgccgctgctccagcc 77
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 2.8 Identities = 29/31 (93%), Gaps = 1/31 (3%) Strand = Plus / Minus Query: 12 gccggcgccgctgttccagcccggcgagctc 42 ||||||||||| ||||||| ||||||||||| Sbjct: 20847785 gccggcgccgccgttccag-ccggcgagctc 20847756
>dbj|AP006753.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0039D04 Length = 184408 Score = 38.2 bits (19), Expect = 2.8 Identities = 29/31 (93%), Gaps = 1/31 (3%) Strand = Plus / Minus Query: 12 gccggcgccgctgttccagcccggcgagctc 42 ||||||||||| ||||||| ||||||||||| Sbjct: 58575 gccggcgccgccgttccag-ccggcgagctc 58546
>dbj|AP005510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0009N02 Length = 121142 Score = 38.2 bits (19), Expect = 2.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 10 ccgccggcgccgctgttccagcc 32 ||||||||| ||||||||||||| Sbjct: 59156 ccgccggcggcgctgttccagcc 59178
>dbj|AK107294.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C02, full insert sequence Length = 1537 Score = 38.2 bits (19), Expect = 2.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 10 ccgccggcgccgctgttccagcc 32 ||||||||| ||||||||||||| Sbjct: 1121 ccgccggcggcgctgttccagcc 1099
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 38.2 bits (19), Expect = 2.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 20 cgctgttccagcccggcgagctc 42 |||||||||||||||||| |||| Sbjct: 1950723 cgctgttccagcccggcgtgctc 1950701
>gb|AC090053.5| Leishmania major strain Friedlin chromosome Unknown clone P323, complete sequence Length = 66637 Score = 38.2 bits (19), Expect = 2.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 ggcgccgctgttccagccc 33 ||||||||||||||||||| Sbjct: 18073 ggcgccgctgttccagccc 18055 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 387,883 Number of Sequences: 3902068 Number of extensions: 387883 Number of successful extensions: 33774 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 33222 Number of HSP's gapped (non-prelim): 554 length of query: 71 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 50 effective length of database: 17,151,101,840 effective search space: 857555092000 effective search space used: 857555092000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
