>UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1)
          Length = 765

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 2   KLRPPNPQRKSSQAKPNTRRFSREEDMEERRNDSQRQE 115
           KLR PNP  KSS+    ++  S E+D EE  +D + +E
Sbjct: 658 KLRGPNP--KSSRTTLQSKSESEEDDDEEEEDDEEEEE 693

>CHLD_TOBAC (O24133) Magnesium-chelatase subunit chlD, chloroplast precursor|
           (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase)
           (Mg-chelatase subunit D)
          Length = 758

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 11  PPNPQRKSSQAKPNTRRFSREEDME-ERRNDSQRQEPTV 124
           PP PQ + S  + N      EED E E+  ++++Q+P V
Sbjct: 413 PPPPQNQDSSEEQNEEEEKEEEDQEDEKDRENEQQQPQV 451

>YIQ1_YEAST (P40449) Hypothetical 27.1 kDa protein in SUC2-FOX3 intergenic|
           region
          Length = 235

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +2

Query: 2   KLRPPNPQRKSSQA--KPNTRRFSREEDMEERRNDSQRQE 115
           K +  N +RK++    K NT  +S+E ++EER+  ++RQE
Sbjct: 74  KSQAKNRRRKNNNGANKKNTLHYSKEINVEERKQIAKRQE 113

>CWC15_CANAL (Q59PD3) Pre-mRNA-splicing factor CWC15|
          Length = 224

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 30  NQAKPSQTHDVSAEKKTWRSGAMTANARNPRS 125
           N +   QTHD S +KK+WRS     N     S
Sbjct: 166 NNSLTLQTHDSSTKKKSWRSSTTFNNKSKKES 197

>UBF1_RAT (P25977) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1)
          Length = 764

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 2   KLRPPNPQRKSSQAKPNTRRFSREEDMEERRNDSQRQE 115
           KLR PNP  KSS+    ++  S E+D EE  +D   +E
Sbjct: 658 KLRGPNP--KSSRTTLQSKSESEEDDDEEDDDDDDEEE 693

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = -2

Query: 450 APGVQRQ*LSGEAPSRXXXXXXXXXXXXXXDPTEEFRASSRNSLPSGLRPGACASSKAR 274
           +P +  +   G  PSR               P+   RAS  +S P  LR GA AS + R
Sbjct: 646 SPSISSKHRKGSPPSRSNRETRSPPQNKRDSPSPRPRASHTSSSPPPLRRGASASPQRR 704


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,202,586
Number of Sequences: 219361
Number of extensions: 693815
Number of successful extensions: 2632
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2627
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)