ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart52g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1YMF9_YEAST (Q04958) Hypothetical UPF0028 protein YML059c 31 1.5
2RL1_HHV11 (O12396) Neurovirulence factor RL1 (Neurovirulence fac... 31 2.0
3ICP34_HHV11 (P36313) Infected cell protein ICP34.5 (Neurovirulen... 31 2.0
4SIA7E_HUMAN (Q9BVH7) Alpha-N-acetylgalactosaminide alpha-2,6-sia... 29 5.8
5CALGL_TROCA (Q3SB11) Calglandulin 29 5.8
6CALGL_PSETE (Q3SB13) Calglandulin 29 5.8
7CALGL_PSEPO (Q3SB08) Calglandulin 29 5.8
8CALGL_PSEAU (Q3SB09) Calglandulin 29 5.8
9CALGL_OXYSC (Q3SB15) Calglandulin 29 5.8
10CALGL_OXYMI (Q3SB14) Calglandulin 29 5.8
11CALGL_NOTSC (Q3SB12) Calglandulin 29 5.8
12CALGL_HOPST (Q3SB10) Calglandulin 29 5.8
13ICP34_HHV1D (P37318) Infected cell protein ICP34.5 (Neurovirulen... 29 5.8
14OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid) 29 5.8
15ZC3H3_HUMAN (Q8IXZ2) Zinc finger CCCH-type domain-containing pro... 29 5.8
16CSPG3_PANTR (Q5IS41) Neurocan core protein precursor (Chondroiti... 29 7.6
17GL6S_CAPHI (P50426) N-acetylglucosamine-6-sulfatase precursor (E... 28 9.9
18ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulen... 28 9.9 
>YMF9_YEAST (Q04958) Hypothetical UPF0028 protein YML059c|
          Length = 1679

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 433 AHYNKR*GRSTSS-IEVENRWFSLCIPHLRSPSTRIRPLAWSATPLHDHV 287
           ++ +KR  RS+S+   V ++ FS   P LR+      PL+   T +HDH+
Sbjct: 609 SNQHKRSSRSSSNNASVHSKKFSSLSPELRNAQLSTSPLSLDNTSVHDHI 658
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>RL1_HHV11 (O12396) Neurovirulence factor RL1 (Neurovirulence factor ICP34.5)|
          Length = 248

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = +2

Query: 176 SHPAVRSYISAAEPPSPDGGTIGGTA--ARRW----SSAGDDGD 289
           S PAVRS  +AA PP P GG     +   R+W     SA DD D
Sbjct: 35  SEPAVRSAPAAAPPPPPAGGPPPSCSLLLRQWLHVPESASDDDD 78
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>ICP34_HHV11 (P36313) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 248

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = +2

Query: 176 SHPAVRSYISAAEPPSPDGGTIGGTA--ARRW----SSAGDDGD 289
           S PAVRS  +AA PP P GG     +   R+W     SA DD D
Sbjct: 35  SEPAVRSAPAAAPPPPPAGGPPPSCSLLLRQWLHVPESASDDDD 78
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>SIA7E_HUMAN (Q9BVH7) Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase|
           5 (EC 2.4.99.-) (GalNAc alpha-2,6-sialyltransferase V)
           (ST6GalNAc V) (GD1 alpha synthase) (Sialyltransferase
           7E)
          Length = 336

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 402 HPASKLRIDGFRCVFLIFDLPLRGYGRWHGPRRRYTTMSPSS 277
           H     +ID   CV  + D P RGYGR  G R     ++ SS
Sbjct: 107 HSRQGSQIDQTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSS 148
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>CALGL_TROCA (Q3SB11) Calglandulin|
          Length = 156

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = -3

Query: 402 HPASKLRIDGFRCVFLIFDLPLRGYGRWHGPRRRYTTMSPSSPALDHRRAAVPPMVPPSG 223
           H  SK + +  R  F +FD   +GY  W     +Y  M+   P  +H    +       G
Sbjct: 77  HEKSKNQDEELRAAFKVFDKEHKGYIEW--DTLKYVLMNAGEPLNEHEAELMMKEADKDG 134

Query: 222 EG 217
           +G
Sbjct: 135 DG 136
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>CALGL_PSETE (Q3SB13) Calglandulin|
          Length = 156

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = -3

Query: 402 HPASKLRIDGFRCVFLIFDLPLRGYGRWHGPRRRYTTMSPSSPALDHRRAAVPPMVPPSG 223
           H  SK + +  R  F +FD   +GY  W     +Y  M+   P  +H    +       G
Sbjct: 77  HEKSKNQDEELRAAFKVFDKEHKGYIEW--DTLKYVLMNAGEPLNEHEAELMMKEADKDG 134

Query: 222 EG 217
           +G
Sbjct: 135 DG 136
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>CALGL_PSEPO (Q3SB08) Calglandulin|
          Length = 156

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = -3

Query: 402 HPASKLRIDGFRCVFLIFDLPLRGYGRWHGPRRRYTTMSPSSPALDHRRAAVPPMVPPSG 223
           H  SK + +  R  F +FD   +GY  W     +Y  M+   P  +H    +       G
Sbjct: 77  HEKSKNQDEELRAAFKVFDKEHKGYIEW--DTLKYVLMNAGEPLNEHEAELMMKEADKDG 134

Query: 222 EG 217
           +G
Sbjct: 135 DG 136
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>CALGL_PSEAU (Q3SB09) Calglandulin|
          Length = 156

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = -3

Query: 402 HPASKLRIDGFRCVFLIFDLPLRGYGRWHGPRRRYTTMSPSSPALDHRRAAVPPMVPPSG 223
           H  SK + +  R  F +FD   +GY  W     +Y  M+   P  +H    +       G
Sbjct: 77  HEKSKNQDEELRAAFKVFDKEHKGYIEW--DTLKYVLMNAGEPLNEHEAELMMKEADKDG 134

Query: 222 EG 217
           +G
Sbjct: 135 DG 136
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>CALGL_OXYSC (Q3SB15) Calglandulin|
          Length = 156

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = -3

Query: 402 HPASKLRIDGFRCVFLIFDLPLRGYGRWHGPRRRYTTMSPSSPALDHRRAAVPPMVPPSG 223
           H  SK + +  R  F +FD   +GY  W     +Y  M+   P  +H    +       G
Sbjct: 77  HEKSKNQDEELRAAFKVFDKEHKGYIEW--DTLKYVLMNAGEPLNEHEAELMMKEADKDG 134

Query: 222 EG 217
           +G
Sbjct: 135 DG 136
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>CALGL_OXYMI (Q3SB14) Calglandulin|
          Length = 156

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = -3

Query: 402 HPASKLRIDGFRCVFLIFDLPLRGYGRWHGPRRRYTTMSPSSPALDHRRAAVPPMVPPSG 223
           H  SK + +  R  F +FD   +GY  W     +Y  M+   P  +H    +       G
Sbjct: 77  HEKSKNQDEELRAAFKVFDKEHKGYIEW--DTLKYVLMNAGEPLNEHEAELMMKEADKDG 134

Query: 222 EG 217
           +G
Sbjct: 135 DG 136
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>CALGL_NOTSC (Q3SB12) Calglandulin|
          Length = 156

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = -3

Query: 402 HPASKLRIDGFRCVFLIFDLPLRGYGRWHGPRRRYTTMSPSSPALDHRRAAVPPMVPPSG 223
           H  SK + +  R  F +FD   +GY  W     +Y  M+   P  +H    +       G
Sbjct: 77  HEKSKNQDEELRAAFKVFDKEHKGYIEW--DTLKYVLMNAGEPLNEHEAELMMKEADKDG 134

Query: 222 EG 217
           +G
Sbjct: 135 DG 136
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>CALGL_HOPST (Q3SB10) Calglandulin|
          Length = 156

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = -3

Query: 402 HPASKLRIDGFRCVFLIFDLPLRGYGRWHGPRRRYTTMSPSSPALDHRRAAVPPMVPPSG 223
           H  SK + +  R  F +FD   +GY  W     +Y  M+   P  +H    +       G
Sbjct: 77  HEKSKNQDEELRAAFKVFDKEHKGYIEW--DTLKYVLMNAGEPLNEHEAELMMKEADKDG 134

Query: 222 EG 217
           +G
Sbjct: 135 DG 136
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>ICP34_HHV1D (P37318) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 252

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = +2

Query: 176 SHPAVRSYISAAEPPSPDGGTIGGTA--ARRW----SSAGDDGD 289
           S P VRS  +AA PP P GG     +   R+W     SA DD D
Sbjct: 36  SEPVVRSAPAAAPPPPPAGGPPPSCSLLLRQWLQVPESASDDDD 79
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>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = -3

Query: 330  YGRWHGPRRRYTTMSPSSPALDHRRAAVP--PMVPPSGEGGSAAEM*ERTAGWD 175
            YG W    ++Y    PSSPA  +   A P     PP    G   +     A WD
Sbjct: 1504 YGAWQSGTQQYRPQYPSSPAPQNWGGAPPRGAAPPPGAPHGPPIQQPAGVAQWD 1557
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>ZC3H3_HUMAN (Q8IXZ2) Zinc finger CCCH-type domain-containing protein 3|
          Length = 948

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -3

Query: 318 HGPRR-----RYTTMSPSSPALDHRRAAVPPMVPPSGEGGSAA 205
           HGPR+     R T  +PSS AL     A PP  P    GGSA+
Sbjct: 828 HGPRKPSASQRPTRQTPSSAALTAAAVAAPPHCP----GGSAS 866
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>CSPG3_PANTR (Q5IS41) Neurocan core protein precursor (Chondroitin sulfate|
           proteoglycan 3)
          Length = 1321

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 297 TTMSPSSPALDHRRAAVPPMVPPSGEGGSAAEM*ERTAGWD 175
           TT  P SPA + +  ++P  + P+G+GG A      + G D
Sbjct: 664 TTTPPPSPAAETKVYSLPLSLTPTGQGGEAMPTTPESPGAD 704
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>GL6S_CAPHI (P50426) N-acetylglucosamine-6-sulfatase precursor (EC 3.1.6.14)|
           (G6S) (Glucosamine-6-sulfatase)
          Length = 559

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 50  RPQASPPLHLLTGSPSRPPP 109
           RP+   P HL +GSP+ PPP
Sbjct: 10  RPRRGGPRHLPSGSPAPPPP 29
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>ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 263

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = +2

Query: 176 SHPAVRSYISAAEPPSPDGGTIGGTA--ARRW----SSAGDDGD 289
           S PAVRS  +AA PP P  G     +   R+W     SA DD D
Sbjct: 35  SEPAVRSAPAAAPPPPPASGPPPSCSLLLRQWLHVPESASDDDD 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,111,317
Number of Sequences: 219361
Number of extensions: 1098589
Number of successful extensions: 4101
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4097
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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