ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart52f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast prec... 32 0.82
2IAAG_MAIZE (Q41819) Indole-3-acetate beta-glucosyltransferase (E... 32 1.1
3MURB_SHEON (Q8EK85) UDP-N-acetylenolpyruvoylglucosamine reductas... 31 1.4
4ATG13_ASPFU (Q4WHN5) Autophagy-related protein 13 30 3.1
5GCSP_RALSO (Q8XU98) Glycine dehydrogenase [decarboxylating] (EC ... 29 5.3
6SPAG1_MOUSE (Q80ZX8) Sperm-associated antigen 1 (Infertility-rel... 29 5.3
7EXO70_GIBZE (Q4ILI9) Exocyst complex protein EXO70 29 6.9
8ZBT12_HUMAN (Q9Y330) Zinc finger and BTB domain-containing prote... 29 6.9
9LOX15_RABIT (P12530) Arachidonate 15-lipoxygenase (EC 1.13.11.33... 28 9.1
10LOX12_RABIT (O19043) Arachidonate 12-lipoxygenase, 12S-type (EC ... 28 9.1
11LOX12_PIG (P16469) Arachidonate 12-lipoxygenase, 12S-type (EC 1.... 28 9.1
12LOX15_PONPY (Q5RBE8) Arachidonate 15-lipoxygenase (EC 1.13.11.33... 28 9.1
13LOX15_HUMAN (P16050) Arachidonate 15-lipoxygenase (EC 1.13.11.33... 28 9.1

>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 26/69 (37%), Positives = 36/69 (52%)
 Frame = -1

Query: 415 RVATTADRLSKVAWRLRALASPSLAMEPSSRPSEYGA*ETTPSVAVSSSLSTARDEGNMR 236
           R++ TA      AW+  A+A+P  A  PS  P    A    P+   SS+L T   +G+MR
Sbjct: 272 RISQTAGE----AWKAGAVAAPPAAPTPS--PPGLAA---APTRLASSALGTHSSDGDMR 322

Query: 235 R*ADTGRET 209
           R A  GR+T
Sbjct: 323 R-AVPGRDT 330



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>IAAG_MAIZE (Q41819) Indole-3-acetate beta-glucosyltransferase (EC 2.4.1.121)|
           (IAA-Glu synthetase) ((Uridine
           5'-diphosphate-glucose:indol-3-ylacetyl)-beta-D-glucosyl
           transferase)
          Length = 471

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 35/119 (29%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
 Frame = +3

Query: 102 HFLIVAYGIQSHLNPCRVLAHRLARLHDGSGPVLATVSLPVSAHRRMFPSSRAVDNDEDT 281
           H L+V +  Q H+NP    A RLA    G    L T               R  D D   
Sbjct: 4   HVLVVPFPGQGHMNPMVQFAKRLA--SKGVATTLVTTRF----------IQRTADVDAHP 51

Query: 282 ATDGVVSYAPYSDGLDDG---SMARDGEARARSRHATFESLSAVVATLAARGRPVTCVV 449
           A    +     SDG D+G   S A   E   +   A   SL+++V   A+     TCVV
Sbjct: 52  AMVEAI-----SDGHDEGGFASAAGVAEYLEKQAAAASASLASLVEARASSADAFTCVV 105



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>MURB_SHEON (Q8EK85) UDP-N-acetylenolpyruvoylglucosamine reductase (EC|
           1.1.1.158) (UDP-N-acetylmuramate dehydrogenase)
          Length = 341

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 78  NGGVHTGHHFLIVAYGIQSHLNPCRVLAHRLARLHDGSGPVL 203
           N GVH     ++V  G  +  + CR+  H +AR+HD  G +L
Sbjct: 283 NAGVHAKQALVLVNLGNATGQDICRLALHVIARVHDVFGVML 324



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>ATG13_ASPFU (Q4WHN5) Autophagy-related protein 13|
          Length = 958

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 21/66 (31%), Positives = 29/66 (43%)
 Frame = +3

Query: 228 AHRRMFPSSRAVDNDEDTATDGVVSYAPYSDGLDDGSMARDGEARARSRHATFESLSAVV 407
           +HRR  PSS  ++  ED A+ G  S          G +A      A S HA  E++S  +
Sbjct: 496 SHRRGRPSSGGINKIEDDASSGKASATSSGAQPGSGLLAEVTGTSADSLHADDENISEFL 555

Query: 408 ATLAAR 425
             L  R
Sbjct: 556 KMLDLR 561



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>GCSP_RALSO (Q8XU98) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 982

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 22/64 (34%), Positives = 28/64 (43%)
 Frame = +3

Query: 123 GIQSHLNPCRVLAHRLARLHDGSGPVLATVSLPVSAHRRMFPSSRAVDNDEDTATDGVVS 302
           G  SHLN    L       H G GP +  V+  V AH   F   RA   ++ +   G VS
Sbjct: 720 GDVSHLN----LHKTFCIPHGGGGPGVGPVA--VGAHLAPFLPGRAASGEDASQNIGAVS 773

Query: 303 YAPY 314
            AP+
Sbjct: 774 AAPF 777



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>SPAG1_MOUSE (Q80ZX8) Sperm-associated antigen 1 (Infertility-related sperm|
           protein Spag-1) (TPR-containing protein involved in
           spermatogenesis) (TPIS)
          Length = 901

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +3

Query: 264 DNDEDTATDGVVSYAPYSDGLDDGSMARDGEARARSRHATFESLSAVVATLAARGRPVTC 443
           D + +   +   + AP  DG++DG  A   E    S+         V++T++AR     C
Sbjct: 741 DEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKPTNAYEFGQVLSTISARKDEEAC 800



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>EXO70_GIBZE (Q4ILI9) Exocyst complex protein EXO70|
          Length = 632

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +3

Query: 108 LIVAYGIQSHLNPCRVLAHRLARLHDGSGPVLATVSLPVSAHRRMFPSSRAVDNDEDTAT 287
           LI +Y ++SH N    LAH  A +    GP L+     ++A        ++ D      T
Sbjct: 190 LIYSYVVESHHNGASELAHIYAEVR---GPYLSASLANLAAASVNTAKKKSPDAVYRAGT 246

Query: 288 DGVVSYAPYSDGL 326
           +G+ +YA   +GL
Sbjct: 247 NGMGTYAQAMEGL 259



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>ZBT12_HUMAN (Q9Y330) Zinc finger and BTB domain-containing protein 12 (Protein|
           G10)
          Length = 459

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = -3

Query: 362 PRLAVPGHGAVVEAVGVWSVRDDAVGGGILIVVDG-------SGRREHAAVSGHREGDGG 204
           P    P  G V      +S+ +DA G G+L++  G       SG  E AAV+    G GG
Sbjct: 253 PSTVAPPQGVVKAC---YSLSEDAEGEGLLLIPGGRASVGATSGLVEAAAVAMAARGAGG 309

Query: 203 EDGPG 189
             G G
Sbjct: 310 SLGAG 314



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>LOX15_RABIT (P12530) Arachidonate 15-lipoxygenase (EC 1.13.11.33) (Omega-6|
           lipoxygenase) (Erythroid cell-specific 15-lipoxygenase)
           (15-LOX)
          Length = 662

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 253 PEPSTTMRIPPPTASSLTLHTPTAS 327
           P    TMR+PPPT    TL T  A+
Sbjct: 555 PNAPCTMRLPPPTTKDATLETVMAT 579



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>LOX12_RABIT (O19043) Arachidonate 12-lipoxygenase, 12S-type (EC 1.13.11.31)|
           (12-LOX)
          Length = 662

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 253 PEPSTTMRIPPPTASSLTLHTPTAS 327
           P    TMR+PPPT    TL T  A+
Sbjct: 555 PNAPCTMRLPPPTTKDATLETVMAT 579



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>LOX12_PIG (P16469) Arachidonate 12-lipoxygenase, 12S-type (EC 1.13.11.31)|
           (12-LOX)
          Length = 662

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 253 PEPSTTMRIPPPTASSLTLHTPTAS 327
           P    TMR+PPPT    TL T  A+
Sbjct: 555 PNAPCTMRLPPPTTKDATLETVMAT 579



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>LOX15_PONPY (Q5RBE8) Arachidonate 15-lipoxygenase (EC 1.13.11.33) (Arachidonate|
           omega-6 lipoxygenase) (15-LOX)
          Length = 661

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 253 PEPSTTMRIPPPTASSLTLHTPTAS 327
           P    TMR+PPPT    TL T  A+
Sbjct: 554 PNAPCTMRLPPPTTKDATLETVMAT 578



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>LOX15_HUMAN (P16050) Arachidonate 15-lipoxygenase (EC 1.13.11.33) (Arachidonate|
           omega-6 lipoxygenase) (15-LOX)
          Length = 661

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 253 PEPSTTMRIPPPTASSLTLHTPTAS 327
           P    TMR+PPPT    TL T  A+
Sbjct: 554 PNAPCTMRLPPPTTKDATLETVMAT 578


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,614,268
Number of Sequences: 219361
Number of extensions: 954280
Number of successful extensions: 3704
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3697
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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