ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart51g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIRL_LYCES (Q9SEE4) Pirin-like protein 49 6e-06
2PIR_MOUSE (Q9D711) Pirin 38 0.013
3PIR_HUMAN (O00625) Pirin 38 0.013
4PIRL2_ARATH (Q9ZW82) Putative pirin-like protein At2g43120 37 0.030
5PIRL1_ARATH (Q9LPS9) Putative pirin-like protein At1g50590 32 0.73

>PIRL_LYCES (Q9SEE4) Pirin-like protein|
          Length = 291

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = +2

Query: 335 RSRAVVQKFMCETQVVGDGFALRRSIGRPELQSLDPFI 448
           R R VV+K +   Q  GDG  +RRSIGRPELQ+LDPF+
Sbjct: 9   RPRLVVKKVLARAQNEGDGAIVRRSIGRPELQNLDPFL 46



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>PIR_MOUSE (Q9D711) Pirin|
          Length = 290

 Score = 37.7 bits (86), Expect = 0.013
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +2

Query: 338 SRAVVQKFMCETQVVGDGFALRRSIGRPELQSLDPFI 448
           S+ V    +   Q  G G  +RRSIGRPEL++LDPF+
Sbjct: 4   SKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFL 40



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>PIR_HUMAN (O00625) Pirin|
          Length = 290

 Score = 37.7 bits (86), Expect = 0.013
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +2

Query: 338 SRAVVQKFMCETQVVGDGFALRRSIGRPELQSLDPFI 448
           S+ V    +   Q  G G  +RRSIGRPEL++LDPF+
Sbjct: 4   SKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFL 40



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>PIRL2_ARATH (Q9ZW82) Putative pirin-like protein At2g43120|
          Length = 296

 Score = 36.6 bits (83), Expect = 0.030
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +2

Query: 338 SRAVVQKFMCETQVVGDGFALRRSIGRPELQSLDPFI 448
           SR V++K   + Q  GDG  +RR I R E + LDPF+
Sbjct: 11  SRPVIKKVFAKLQKEGDGAVVRRGISRSEQKLLDPFL 47



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>PIRL1_ARATH (Q9LPS9) Putative pirin-like protein At1g50590|
          Length = 310

 Score = 32.0 bits (71), Expect = 0.73
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 320 KHPVRRSRAVVQKFMCETQVVGDGFALRRSIGRPELQSLDPFI 448
           K     +R VV+K        G G  +RRSIGR E +  DPF+
Sbjct: 6   KSSATNTRLVVKKLFARQLHEGFGAVVRRSIGRFEFRYFDPFL 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,984,495
Number of Sequences: 219361
Number of extensions: 480321
Number of successful extensions: 1496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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