ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart51c08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474151.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 174 bits (88), Expect = 2e-40 Identities = 227/272 (83%), Gaps = 1/272 (0%) Strand = Plus / Plus Query: 170 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 229 ||||||||||||||||| ||||||||||||||||||||||||||| |||||| || Sbjct: 86 aggagggccactacatggtgtgcaagatcgccgagggtttcctgacgaaggaggcggcga 145 Query: 230 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 289 |||||||||||| |||||| || | |||||||| |||||||||||||| ||||||||| Sbjct: 146 cggcggtgaaggagctcctccccgggtgggccggcggcgagctcgcggaaacgtgctcgt 205 Query: 290 ggccggacgccgtgcggcgccagatgccgtggtccggctccctgcacttcgccgacaccc 349 || ||||| ||| |||| || | | |||||| || |||| |||||||||||||||| Sbjct: 206 gggcggacaccgagcggttccggtaccggtggtcgagccccctccacttcgccgacaccc 265 Query: 350 ccggcgactgcaagttcagctacgccagggactgccacgggacgaaaggggagaaggaca 409 ||||||||||| |||||| ||||||| |||| |||||| || || || |||||||||| Sbjct: 266 ccggcgactgccagttcaactacgcccgggattgccacaacacaaacggtgagaaggaca 325 Query: 410 tgtgcgtcgtcggaggcatc-acaactacacc 440 |||| || ||||||| ||| ||||||||||| Sbjct: 326 tgtgtgtggtcggagcgatcaacaactacacc 357
>dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full insert sequence Length = 1146 Score = 174 bits (88), Expect = 2e-40 Identities = 227/272 (83%), Gaps = 1/272 (0%) Strand = Plus / Plus Query: 170 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 229 ||||||||||||||||| ||||||||||||||||||||||||||| |||||| || Sbjct: 112 aggagggccactacatggtgtgcaagatcgccgagggtttcctgacgaaggaggcggcga 171 Query: 230 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 289 |||||||||||| |||||| || | |||||||| |||||||||||||| ||||||||| Sbjct: 172 cggcggtgaaggagctcctccccgggtgggccggcggcgagctcgcggaaacgtgctcgt 231 Query: 290 ggccggacgccgtgcggcgccagatgccgtggtccggctccctgcacttcgccgacaccc 349 || ||||| ||| |||| || | | |||||| || |||| |||||||||||||||| Sbjct: 232 gggcggacaccgagcggttccggtaccggtggtcgagccccctccacttcgccgacaccc 291 Query: 350 ccggcgactgcaagttcagctacgccagggactgccacgggacgaaaggggagaaggaca 409 ||||||||||| |||||| ||||||| |||| |||||| || || || |||||||||| Sbjct: 292 ccggcgactgccagttcaactacgcccgggattgccacaacacaaacggtgagaaggaca 351 Query: 410 tgtgcgtcgtcggaggcatc-acaactacacc 440 |||| || ||||||| ||| ||||||||||| Sbjct: 352 tgtgtgtggtcggagcgatcaacaactacacc 383
>dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds Length = 1180 Score = 153 bits (77), Expect = 6e-34 Identities = 126/141 (89%), Gaps = 1/141 (0%) Strand = Plus / Plus Query: 318 gtggtccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgccag 377 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 279 gtggtcccgctccctgcacttcgccgacacccccggcgactgcaagttcagctacgccag 338 Query: 378 ggactgccacgggacgaaaggggagaaggacatgtgcgtcgtcggaggcatc-acaacta 436 ||||||||||| || || ||| | ||| || ||||||| ||||| | |||| ||||||| Sbjct: 339 ggactgccacgacaccaaggggaacaagaacgtgtgcgtggtcggggccatcaacaacta 398 Query: 437 caccgccgccctccaagactc 457 ||||||||| ||||| ||||| Sbjct: 399 caccgccgcgctccaggactc 419 Score = 143 bits (72), Expect = 6e-31 Identities = 114/128 (89%) Strand = Plus / Plus Query: 170 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 229 |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | Sbjct: 131 aggagggccactacatgacctgcaagatcgccgacggtttcctgacgagcgaggcgttga 190 Query: 230 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 289 ||| |||||||| |||||| ||| ||||||| |||||||||||||| || |||||||| Sbjct: 191 cgggggtgaaggcgctcctcccgtcgtgggccaacggcgagctcgcggaggtgtgctcgt 250 Query: 290 ggccggac 297 || ||||| Sbjct: 251 gggcggac 258
>dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, complete cds Length = 1283 Score = 143 bits (72), Expect = 6e-31 Identities = 114/128 (89%) Strand = Plus / Plus Query: 170 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 229 ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| |||| Sbjct: 159 aggaggggcactacatgacctgcaagatcgccgatggtttcctgacgagcgaggcatcgg 218 Query: 230 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 289 |||||||||||| ||||||||| ||||||| |||||||||||||| || |||| ||| Sbjct: 219 cggcggtgaaggacctcctgccgtcgtgggccaacggcgagctcgcggaggtgtgcgcgt 278 Query: 290 ggccggac 297 || ||||| Sbjct: 279 gggcggac 286 Score = 123 bits (62), Expect = 5e-25 Identities = 105/118 (88%), Gaps = 1/118 (0%) Strand = Plus / Plus Query: 329 ccctgcacttcgccgacacccccggcgactgcaagttcagctacgccagggactgccacg 388 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 318 ccctgcacttcgccgacacccccggtgactgcaacttcagctacgccagggactgccacg 377 Query: 389 ggacgaaaggggagaaggacatgtgcgtcgtcggaggcatc-acaactacaccgccgc 445 || || ||| | |||||| ||||||| || |||| |||| |||||||||||||||| Sbjct: 378 acaccaaggggaacaaggacgtgtgcgtggtgggagccatcaacaactacaccgccgc 435
>emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nuclease (bnuc2 gene) Length = 1139 Score = 117 bits (59), Expect = 3e-23 Identities = 110/127 (86%) Strand = Plus / Plus Query: 170 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 229 ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct: 138 aggaggggcactacatgacctgcaagatcgccgatggtttcctgacgaaggaggcgtcgg 197 Query: 230 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 289 ||| |||||||| ||||| ||| || |||| |||||||||||||| || |||||||| Sbjct: 198 cgggggtgaaggatctcctcccgtcgtcggccaacggcgagctcgcggaggtgtgctcgt 257 Query: 290 ggccgga 296 || |||| Sbjct: 258 gggcgga 264 Score = 77.8 bits (39), Expect = 3e-11 Identities = 100/119 (84%), Gaps = 1/119 (0%) Strand = Plus / Plus Query: 331 ctgcacttcgccgacacccccggcgactgcaagttcagctacgccagggactgccacggg 390 ||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| Sbjct: 299 ctgcacttcgctgacaccccaaaagactgcaagttcagctacgcccgggactgccacgac 358 Query: 391 acgaaaggggagaaggacatgtgcgtcgtcggaggca-tcacaactacaccgccgccct 448 || || ||| | |||||| |||||| ||||| | || | ||||||||||||||||||| Sbjct: 359 accaaggggaacaaggacgcgtgcgtggtcggggccattaacaactacaccgccgccct 417
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06, complete sequence Length = 151506 Score = 113 bits (57), Expect = 5e-22 Identities = 144/173 (83%) Strand = Plus / Plus Query: 203 agggtttcctgacgggcgaggcgtcggcggcggtgaaggggctcctgccggagtgggccg 262 |||||||||||||| |||||| || |||||||||||| |||||| || | |||||||| Sbjct: 60308 agggtttcctgacgaaggaggcggcgacggcggtgaaggagctcctccccgggtgggccg 60367 Query: 263 tcggcgagctcgcggcggcgtgctcgtggccggacgccgtgcggcgccagatgccgtggt 322 |||||||||||||| ||||||||||| ||||| ||| |||| || | | ||||| Sbjct: 60368 gcggcgagctcgcggaaacgtgctcgtgggcggacaccgagcggttccggtaccggtggt 60427 Query: 323 ccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgcc 375 | || |||| ||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 60428 cgagccccctccacttcgccgacacccccggcgactgccagttcaactacgcc 60480 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 170 aggagggccactacatgacctgcaagatcgccgagg 205 ||||||||||||||||| |||||||||||||||| Sbjct: 60190 aggagggccactacatggtgtgcaagatcgccgagg 60225
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 113 bits (57), Expect = 5e-22 Identities = 144/173 (83%) Strand = Plus / Plus Query: 203 agggtttcctgacgggcgaggcgtcggcggcggtgaaggggctcctgccggagtgggccg 262 |||||||||||||| |||||| || |||||||||||| |||||| || | |||||||| Sbjct: 33288047 agggtttcctgacgaaggaggcggcgacggcggtgaaggagctcctccccgggtgggccg 33288106 Query: 263 tcggcgagctcgcggcggcgtgctcgtggccggacgccgtgcggcgccagatgccgtggt 322 |||||||||||||| ||||||||||| ||||| ||| |||| || | | ||||| Sbjct: 33288107 gcggcgagctcgcggaaacgtgctcgtgggcggacaccgagcggttccggtaccggtggt 33288166 Query: 323 ccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgcc 375 | || |||| ||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 33288167 cgagccccctccacttcgccgacacccccggcgactgccagttcaactacgcc 33288219 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 170 aggagggccactacatgacctgcaagatcgccgagg 205 ||||||||||||||||| |||||||||||||||| Sbjct: 33287929 aggagggccactacatggtgtgcaagatcgccgagg 33287964
>ref|XM_550001.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1290 Score = 48.1 bits (24), Expect = 0.025 Identities = 45/52 (86%) Strand = Plus / Plus Query: 221 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 272 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 177 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 228
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.025 Identities = 45/52 (86%) Strand = Plus / Plus Query: 221 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 272 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 1565424 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 1565475
>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408F06 Length = 137462 Score = 48.1 bits (24), Expect = 0.025 Identities = 45/52 (86%) Strand = Plus / Plus Query: 221 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 272 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 2655 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 2706
>dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0409B08 Length = 134673 Score = 48.1 bits (24), Expect = 0.025 Identities = 45/52 (86%) Strand = Plus / Plus Query: 221 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 272 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 131072 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 131123
>dbj|AK071917.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071I09, full insert sequence Length = 3171 Score = 48.1 bits (24), Expect = 0.025 Identities = 45/52 (86%) Strand = Plus / Minus Query: 221 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 272 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 134 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 83
>dbj|AK059608.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F03, full insert sequence Length = 1290 Score = 48.1 bits (24), Expect = 0.025 Identities = 45/52 (86%) Strand = Plus / Plus Query: 221 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 272 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 177 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 228
>gb|AY105439.1| Zea mays PCO064225 mRNA sequence Length = 1193 Score = 48.1 bits (24), Expect = 0.025 Identities = 102/128 (79%) Strand = Plus / Plus Query: 170 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 229 ||||||||||| |||| |||||||||||||||| | |||| ||| ||||| ||| Sbjct: 208 aggagggccacatcatggtctgcaagatcgccgagaagtacctgtcggagaaggcggcgg 267 Query: 230 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 289 |||||||| ||| ||| |||||||||| ||| | ||| ||||| || ||| |||| ||| Sbjct: 268 cggcggtgcaggcgctgctgccggagtcggcgggcggggagctgtcgacggtgtgcccgt 327 Query: 290 ggccggac 297 || ||||| Sbjct: 328 gggcggac 335
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 356 actgcaagttcagctacgccag 377 |||||||||||||||||||||| Sbjct: 112943 actgcaagttcagctacgccag 112922
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 217 ggcgaggcgtcggcggcggtga 238 |||||||||||||||||||||| Sbjct: 23397164 ggcgaggcgtcggcggcggtga 23397185 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 337 ttcgccgacacccccggcgactgca 361 ||||||| ||||||||||||||||| Sbjct: 5924436 ttcgccgtcacccccggcgactgca 5924460
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 172 gagggccactacatgacctgcaagat 197 |||||||||||||| ||||||||||| Sbjct: 28863210 gagggccactacattacctgcaagat 28863235 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 cgtcggcggcggtgaaggggc 244 ||||||||||||||||||||| Sbjct: 7803216 cgtcggcggcggtgaaggggc 7803236
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 356 actgcaagttcagctacgccag 377 |||||||||||||||||||||| Sbjct: 29334286 actgcaagttcagctacgccag 29334265 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 ggcgaggcgtcggcggcggtgaag 240 ||||||||| |||||||||||||| Sbjct: 21778643 ggcgaggcggcggcggcggtgaag 21778620 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ggcgagctcgcggcggcgtg 284 |||||||||||||||||||| Sbjct: 4357349 ggcgagctcgcggcggcgtg 4357368
>dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1199_H01 Length = 107252 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 217 ggcgaggcgtcggcggcggtga 238 |||||||||||||||||||||| Sbjct: 78388 ggcgaggcgtcggcggcggtga 78409
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 93 ccggctgcttcaggccgtcctc 114 |||||||||||||||||||||| Sbjct: 5488685 ccggctgcttcaggccgtcctc 5488664
>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468G03 Length = 143918 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 172 gagggccactacatgacctgcaagat 197 |||||||||||||| ||||||||||| Sbjct: 13254 gagggccactacattacctgcaagat 13279
>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453G03 Length = 144480 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 217 ggcgaggcgtcggcggcggtga 238 |||||||||||||||||||||| Sbjct: 17061 ggcgaggcgtcggcggcggtga 17082
>ref|XM_477103.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2292 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 337 ttcgccgacacccccggcgactgca 361 ||||||| ||||||||||||||||| Sbjct: 1046 ttcgccgtcacccccggcgactgca 1022
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 tcggcggcggtgaaggggctc 246 ||||||||||||||||||||| Sbjct: 3385402 tcggcggcggtgaaggggctc 3385382
>ref|XM_284542.6| PREDICTED: Mus musculus hypothetical protein LOC620538 (LOC620538), mRNA Length = 5131 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 263 tcggcgagctcgcggcggcgtgctc 287 |||||||||||||||||||| |||| Sbjct: 100 tcggcgagctcgcggcggcgcgctc 76
>dbj|AK079552.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230061D21 product:hypothetical TPR repeat/Ankyrin-repeat/Ankyrin repeat region circular profile/Yeast DNA-binding domain containing protein, full insert sequence Length = 2845 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 263 tcggcgagctcgcggcggcgtgctc 287 |||||||||||||||||||| |||| Sbjct: 101 tcggcgagctcgcggcggcgcgctc 77
>gb|AC126677.3| Mus musculus BAC clone RP24-156D14 from chromosome 9, complete sequence Length = 152468 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 263 tcggcgagctcgcggcggcgtgctc 287 |||||||||||||||||||| |||| Sbjct: 37471 tcggcgagctcgcggcggcgcgctc 37495
>dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0431E05 Length = 146091 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 cgtcggcggcggtgaaggggc 244 ||||||||||||||||||||| Sbjct: 17598 cgtcggcggcggtgaaggggc 17618
>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06 Length = 161851 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 cgtcggcggcggtgaaggggc 244 ||||||||||||||||||||| Sbjct: 115714 cgtcggcggcggtgaaggggc 115734
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_A05 Length = 120823 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 337 ttcgccgacacccccggcgactgca 361 ||||||| ||||||||||||||||| Sbjct: 66884 ttcgccgtcacccccggcgactgca 66908
>dbj|AK120944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037N02, full insert sequence Length = 2827 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 337 ttcgccgacacccccggcgactgca 361 ||||||| ||||||||||||||||| Sbjct: 1276 ttcgccgtcacccccggcgactgca 1252
>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence Length = 114045 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 cggcggcggtgaaggggctc 246 |||||||||||||||||||| Sbjct: 24228 cggcggcggtgaaggggctc 24247 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 cggcggcggtgaaggggctc 246 |||||||||||||||||||| Sbjct: 23412 cggcggcggtgaaggggctc 23431
>gb|AC136228.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0672D07, complete sequence Length = 136465 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ggcgagctcgcggcggcgtg 284 |||||||||||||||||||| Sbjct: 111956 ggcgagctcgcggcggcgtg 111975
>gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012G21, complete sequence Length = 135750 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 ggcgaggcgtcggcggcggtgaag 240 ||||||||| |||||||||||||| Sbjct: 31052 ggcgaggcggcggcggcggtgaag 31029
>gb|AC114637.9| Mus musculus chromosome 3, clone RP24-119G15, complete sequence Length = 179087 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 aggacagagagagggccaag 69 |||||||||||||||||||| Sbjct: 25862 aggacagagagagggccaag 25881
>ref|XM_362563.1| Magnaporthe grisea 70-15 hypothetical protein (MG08146.4) partial mRNA Length = 1659 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gacctgcaagatcgccgagg 205 |||||||||||||||||||| Sbjct: 1632 gacctgcaagatcgccgagg 1651
>gb|AC164441.4| Mus musculus BAC clone CH25-660D15 from chromosome 13, complete sequence Length = 110316 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cagcaaggacagagagaggg 64 |||||||||||||||||||| Sbjct: 61011 cagcaaggacagagagaggg 60992
>gb|AC164086.3| Mus musculus BAC clone RP23-25E6 from chromosome 13, complete sequence Length = 214085 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cagcaaggacagagagaggg 64 |||||||||||||||||||| Sbjct: 11296 cagcaaggacagagagaggg 11277
>emb|CR956405.10| Pig DNA sequence from clone CH242-240K6 on chromosome 17, complete sequence Length = 135681 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 gctgcttcaggccgtcctcc 115 |||||||||||||||||||| Sbjct: 28464 gctgcttcaggccgtcctcc 28445
>gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosome 3, complete sequence Length = 177109 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 aggacagagagagggccaag 69 |||||||||||||||||||| Sbjct: 19359 aggacagagagagggccaag 19340
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 acgccgtgcggcgccagatg 315 |||||||||||||||||||| Sbjct: 3428086 acgccgtgcggcgccagatg 3428067
>emb|BX640595.13| Zebrafish DNA sequence from clone CH211-117K11 in linkage group 2, complete sequence Length = 121429 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 atggggttcctccggctgcttcag 105 ||||| |||||||||||||||||| Sbjct: 86090 atgggtttcctccggctgcttcag 86067
>gb|AC121254.2| Homo sapiens chromosome 3 clone RP11-284A4, complete sequence Length = 25487 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cagcaaggacagagagaggg 64 |||||||||||||||||||| Sbjct: 7599 cagcaaggacagagagaggg 7618
>gb|AC015641.9| Homo sapiens chromosome 8, clone RP11-45O16, complete sequence Length = 154580 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cagcaaggacagagagaggg 64 |||||||||||||||||||| Sbjct: 17548 cagcaaggacagagagaggg 17567
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ggccgtcggcgagctcgcgg 277 |||||||||||||||||||| Sbjct: 2769018 ggccgtcggcgagctcgcgg 2769037
>gb|AC158338.1| Homo sapiens chromosome 3 clone WI2-3321H1, complete sequence Length = 43051 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cagcaaggacagagagaggg 64 |||||||||||||||||||| Sbjct: 3656 cagcaaggacagagagaggg 3675
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 agatcgccgagggtttcctg 213 |||||||||||||||||||| Sbjct: 17310943 agatcgccgagggtttcctg 17310924
>gb|AC135352.6| Homo sapiens chromosome 8, clone RP11-369K16, complete sequence Length = 133950 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cagcaaggacagagagaggg 64 |||||||||||||||||||| Sbjct: 128591 cagcaaggacagagagaggg 128610
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ggcgtcggcggcggtgaagg 241 |||||||||||||||||||| Sbjct: 1406836 ggcgtcggcggcggtgaagg 1406817
>dbj|AP005317.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0579G08 Length = 164452 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 agatcgccgagggtttcctg 213 |||||||||||||||||||| Sbjct: 83626 agatcgccgagggtttcctg 83607
>dbj|AK106805.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-C03, full insert sequence Length = 935 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ggcgagctcgcggcggcgtg 284 |||||||||||||||||||| Sbjct: 316 ggcgagctcgcggcggcgtg 297
>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative dehydrogenase/reductase genes, complete cds; erythromycin biosynthesis gene cluster, complete sequence; putative oxidoreductase and LipN genes, complete cds; monoamine oxidase gene, partial cds; and unknown gene Length = 61845 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 tcggcgagctcgcggcggcg 282 |||||||||||||||||||| Sbjct: 54079 tcggcgagctcgcggcggcg 54060
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 329 ccctgcacttcgccgacacccccggcga 356 |||||| |||||||| |||||||||||| Sbjct: 488293 ccctgcgcttcgccgtcacccccggcga 488266
>emb|AL137918.4|CNS01DWQ Human chromosome 14 DNA sequence BAC R-442G21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162016 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ttcagcaaggacagagagag 62 |||||||||||||||||||| Sbjct: 67283 ttcagcaaggacagagagag 67264 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,881,620 Number of Sequences: 3902068 Number of extensions: 2881620 Number of successful extensions: 58328 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57047 Number of HSP's gapped (non-prelim): 1275 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
