ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LEU3_SYNP6 (Q5MZ40) 3-isopropylmalate dehydrogenase (EC 1.1.1.85... 30 3.0
2H5_COLLI (P02260) Histone H5 (Fragment) 29 5.2
3ADA2B_BRARE (Q90WY5) Alpha-2B adrenergic receptor (Alpha-2B adre... 28 6.7
4PTSBC_BACSU (P05306) PTS system sucrose-specific EIIBC component... 28 6.7

>LEU3_SYNP6 (Q5MZ40) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 365

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 292 GLYHQSSVRKVDLQTGKVLDQHQMDGHMFGEGLTLLG 402
           GL    +  +++    +VLDQ    G ++ EG+TL+G
Sbjct: 311 GLDEPEAAARIEAAVNQVLDQGYRTGDLYSEGMTLVG 347



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>H5_COLLI (P02260) Histone H5 (Fragment)|
          Length = 38

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 4  APIPLSVPAPSASPTSWRLRRRP 72
          +PIP+  PAP+A P   R+ +RP
Sbjct: 3  SPIPVPAPAPAAKPKPKRVSKRP 25



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>ADA2B_BRARE (Q90WY5) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor) (Alpha(2B)AR)
          Length = 510

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 224 PTTPRPSPRVSCTEETAPSSS 286
           PTTP PSP  S + E APS S
Sbjct: 307 PTTPCPSPSPSNSSEVAPSKS 327



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>PTSBC_BACSU (P05306) PTS system sucrose-specific EIIBC component (EIIBC-Scr)|
           (EII-Scr) [Includes: Sucrose-specific phosphotransferase
           enzyme IIB component (EC 2.7.1.69) (PTS system
           sucrose-specific EIIB component); Sucrose permease IIC
           component (PTS sys
          Length = 461

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 220 YPHDPEAFTQGLLYGGNGTLFESTGLYH 303
           Y +D   F  GL++GG  +L   TG++H
Sbjct: 284 YVYDHAGFVAGLIFGGTYSLIVLTGVHH 311


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,419,915
Number of Sequences: 219361
Number of extensions: 734020
Number of successful extensions: 3228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3217
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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