>gb|AF479044.1| Triticum aestivum F1-ATPase mRNA, partial cds
          Length = 555

 Score =  103 bits (52), Expect = 6e-20
 Identities = 65/68 (95%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggcgcggcacctccagatccggcctcccgctcctccaagcccgcctcgcggccaccgaat 62
           ||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 57  ggcgcggcacctc-agatccggcctcccgctcctccaagcccgcctcgcggctaacgaat 115

                   
Query: 63  ccgcggcc 70
           ||||||||
Sbjct: 116 ccgcggcc 123

>gb|AY103884.1| Zea mays PCO090977 mRNA sequence
          Length = 1134

 Score = 63.9 bits (32), Expect = 5e-08
 Identities = 60/68 (88%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggcgcggcacctccagatccggcctcccgctcctccaagcccgcctcgcggccaccgaat 62
           ||||||||||||| |||||||||||||| |||||||  |||| ||||||  || ||||||
Sbjct: 130 ggcgcggcacctc-agatccggcctccccctcctccgcgcccacctcgcatcctccgaat 188

                   
Query: 63  ccgcggcc 70
           ||||||||
Sbjct: 189 ccgcggcc 196

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                    
Query: 3        ggcgcggcacctccagatccggcctcccgctcctcc 38
                ||||||||||||| |||||||||||||| |||||||
Sbjct: 26024594 ggcgcggcacctc-agatccggcctccccctcctcc 26024628



 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 32       ctcctccaagcccgcctcg 50
                |||||||||||||||||||
Sbjct: 23225259 ctcctccaagcccgcctcg 23225277



 Score = 38.2 bits (19), Expect = 2.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 16       cagatccggcctcccgctcctcc 38
                ||||||||||||||| |||||||
Sbjct: 13638899 cagatccggcctccctctcctcc 13638877

>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1226_A12
          Length = 113025

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                 
Query: 3     ggcgcggcacctccagatccggcctcccgctcctcc 38
             ||||||||||||| |||||||||||||| |||||||
Sbjct: 62452 ggcgcggcacctc-agatccggcctccccctcctcc 62486

>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0062J02
          Length = 151636

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                
Query: 3    ggcgcggcacctccagatccggcctcccgctcctcc 38
            ||||||||||||| |||||||||||||| |||||||
Sbjct: 3839 ggcgcggcacctc-agatccggcctccccctcctcc 3873

>dbj|AK101953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075I24, full
            insert sequence
          Length = 2362

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                
Query: 3    ggcgcggcacctccagatccggcctcccgctcctcc 38
            ||||||||||||| |||||||||||||| |||||||
Sbjct: 1501 ggcgcggcacctc-agatccggcctccccctcctcc 1535

>dbj|AK071267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086I22, full
           insert sequence
          Length = 1044

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                               
Query: 3   ggcgcggcacctccagatccggcctcccgctcctcc 38
           ||||||||||||| |||||||||||||| |||||||
Sbjct: 147 ggcgcggcacctc-agatccggcctccccctcctcc 181

>gb|BT016671.1| Zea mays clone Contig504 mRNA sequence
          Length = 1081

 Score = 44.1 bits (22), Expect = 0.044
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 21  ccggcctcccgctcctccaagcccgcctcgcggccaccgaatccgcggcc 70
           |||||||||| |||||||  |||| ||||||  || ||||||||||||||
Sbjct: 104 ccggcctccccctcctccgcgcccacctcgcatcctccgaatccgcggcc 153

>ref|XM_990488.1| PREDICTED: Mus musculus hypothetical protein LOC667420 (LOC667420),
           mRNA
          Length = 507

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 31  gctcctccaagcccgcctcgcggcc 55
           ||||||||||||||| |||||||||
Sbjct: 269 gctcctccaagcccggctcgcggcc 245

>emb|AL928589.11| Mouse DNA sequence from clone RP23-350C1 on chromosome 2, complete
              sequence
          Length = 209053

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 31     gctcctccaagcccgcctcgcggcc 55
              ||||||||||||||| |||||||||
Sbjct: 181888 gctcctccaagcccggctcgcggcc 181912

>emb|AL935269.7| Zebrafish DNA sequence from clone DKEY-46J18, complete sequence
          Length = 177658

 Score = 40.1 bits (20), Expect = 0.69
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     cctcccgctcctccaagccc 44
              ||||||||||||||||||||
Sbjct: 175039 cctcccgctcctccaagccc 175020

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 49      cgcggccaccgaatccgcg 67
               |||||||||||||||||||
Sbjct: 1199704 cgcggccaccgaatccgcg 1199722

>ref|XM_425157.1| PREDICTED: Gallus gallus similar to type VII collagen (LOC427584),
            mRNA
          Length = 6924

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 26   ctcccgctcctccaagccc 44
            |||||||||||||||||||
Sbjct: 3466 ctcccgctcctccaagccc 3448

>ref|XM_747417.1| Aspergillus fumigatus Af293 myosin class II heavy chain MHC
           (Afu1g11450) partial mRNA
          Length = 6246

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 20  tccggcctcccgctcctcc 38
           |||||||||||||||||||
Sbjct: 993 tccggcctcccgctcctcc 975

>emb|BX649605.1| Aspergillus fumigatus BAC pilot project supercontig; segment 1/3
          Length = 345637

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    tccggcctcccgctcctcc 38
             |||||||||||||||||||
Sbjct: 65746 tccggcctcccgctcctcc 65764

>gb|AC008712.8| Homo sapiens chromosome 5 clone CTB-7N3, complete sequence
          Length = 147952

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     ctcccgctcctccaagccc 44
              |||||||||||||||||||
Sbjct: 144155 ctcccgctcctccaagccc 144137

>gb|AC091882.3| Homo sapiens chromosome 5 clone RP11-101A19, complete sequence
          Length = 126486

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    ctcccgctcctccaagccc 44
             |||||||||||||||||||
Sbjct: 84338 ctcccgctcctccaagccc 84320

>dbj|AP004679.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0021N09
          Length = 156565

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 16    cagatccggcctcccgctcctcc 38
             ||||||||||||||| |||||||
Sbjct: 46232 cagatccggcctccctctcctcc 46210

>dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0459H02
          Length = 168230

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 16     cagatccggcctcccgctcctcc 38
              ||||||||||||||| |||||||
Sbjct: 167389 cagatccggcctccctctcctcc 167367

>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0642B07
          Length = 139297

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    ctcctccaagcccgcctcg 50
             |||||||||||||||||||
Sbjct: 60021 ctcctccaagcccgcctcg 60039

>dbj|AK101377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036C04, full
           insert sequence
          Length = 2134

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 32  ctcctccaagcccgcctcg 50
           |||||||||||||||||||
Sbjct: 175 ctcctccaagcccgcctcg 193

>emb|AL135818.3|CNS01DVH Human chromosome 14 DNA sequence BAC C-2547L24 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 203777

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     ctcccgctcctccaagccc 44
              |||||||||||||||||||
Sbjct: 121965 ctcccgctcctccaagccc 121983


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 345,180
Number of Sequences: 3902068
Number of extensions: 345180
Number of successful extensions: 27941
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27817
Number of HSP's gapped (non-prelim): 117
length of query: 70
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 49
effective length of database: 17,151,101,840
effective search space: 840403990160
effective search space used: 840403990160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)