ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart50e11 |
|---|---|
| Clone Library Name | barley_pub |
>SSRB_MOUSE (Q9CPW5) Translocon-associated protein beta subunit precursor| (TRAP-beta) (Signal sequence receptor beta subunit) (SSR-beta) Length = 183 Score = 50.8 bits (120), Expect = 8e-07 Identities = 23/56 (41%), Positives = 36/56 (64%) Frame = +3 Query: 207 LAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKTLERLEPGATASHAFVL 374 L + ++YN GS+ A DV ++DDS+P E F +VSG ++ +R+ P + SH VL Sbjct: 40 LTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVL 95
>SSRB_HUMAN (P43308) Translocon-associated protein beta subunit precursor| (TRAP-beta) (Signal sequence receptor beta subunit) (SSR-beta) Length = 183 Score = 50.8 bits (120), Expect = 8e-07 Identities = 23/56 (41%), Positives = 36/56 (64%) Frame = +3 Query: 207 LAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKTLERLEPGATASHAFVL 374 L + ++YN GS+ A DV ++DDS+P E F +VSG ++ +R+ P + SH VL Sbjct: 40 LTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVL 95
>SSRB_CANFA (P23438) Translocon-associated protein beta subunit precursor| (TRAP-beta) (Signal sequence receptor beta subunit) (SSR-beta) (Glycoprotein 25H) (gp25H) Length = 183 Score = 50.8 bits (120), Expect = 8e-07 Identities = 23/56 (41%), Positives = 36/56 (64%) Frame = +3 Query: 207 LAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKTLERLEPGATASHAFVL 374 L + ++YN GS+ A DV ++DDS+P E F +VSG ++ +R+ P + SH VL Sbjct: 40 LTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVL 95
>SSRB_BOVIN (Q5E9E4) Translocon-associated protein beta subunit precursor| (TRAP-beta) (Signal sequence receptor beta subunit) (SSR-beta) Length = 183 Score = 50.8 bits (120), Expect = 8e-07 Identities = 23/56 (41%), Positives = 36/56 (64%) Frame = +3 Query: 207 LAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKTLERLEPGATASHAFVL 374 L + ++YN GS+ A DV ++DDS+P E F +VSG ++ +R+ P + SH VL Sbjct: 40 LTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVL 95
>UCP3_SCHPO (O74345) UBA domain-containing protein 3| Length = 601 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/43 (27%), Positives = 24/43 (55%) Frame = +3 Query: 210 AVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKTLERL 338 + S Y +T +D+ +DDS A E +G+V++ +E++ Sbjct: 152 STSKSRYADSLSTLHDMGFSDDSVNTHALEETNGDVTRAIEKI 194
>SYV_RHIME (Q92Q37) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 947 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/58 (29%), Positives = 24/58 (41%) Frame = -3 Query: 334 LSKVFETSPETSSNASLGQESSLMATSYAVADPWL*RSRETARRSTPGLGRERATFLC 161 L VF E + S + ++ Y + P++ E T G GRER T LC Sbjct: 719 LKPVFNGDDEAAKRESQACTAYVLDEIYKLLHPFMPFMTEELWEKTTGPGRERTTLLC 776
>SATB2_MOUSE (Q8VI24) DNA-binding protein SATB2 (Special AT-rich| sequence-binding protein 2) Length = 733 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/64 (25%), Positives = 31/64 (48%) Frame = +3 Query: 183 RPKPGVERLAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKTLERLEPGATASH 362 +P+P + VS D+Y Q +++ + + AF G +S+ L + E TAS Sbjct: 350 KPEPTNSSVEVSPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEEDPRTASQ 409 Query: 363 AFVL 374 + ++ Sbjct: 410 SLLV 413
>SATB2_HUMAN (Q9UPW6) DNA-binding protein SATB2 (Special AT-rich| sequence-binding protein 2) Length = 733 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/64 (25%), Positives = 31/64 (48%) Frame = +3 Query: 183 RPKPGVERLAVSLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVSKTLERLEPGATASH 362 +P+P + VS D+Y Q +++ + + AF G +S+ L + E TAS Sbjct: 350 KPEPTNSSVEVSPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEEDPRTASQ 409 Query: 363 AFVL 374 + ++ Sbjct: 410 SLLV 413
>YDYD_SCHPO (O13692) Hypothetical protein C11E3.13c precursor| Length = 510 Score = 28.1 bits (61), Expect = 5.3 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 9/82 (10%) Frame = -3 Query: 373 NTNACEAV---------APGSSLSKVFETSPETSSNASLGQESSLMATSYAVADPWL*RS 221 NTN +A + GSS + +S SS +S+ SS M+TSY A S Sbjct: 414 NTNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSA------S 467 Query: 220 RETARRSTPGLGRERATFLCAT 155 +A S G AT +T Sbjct: 468 GSSAHSSGSSSGSSSATSSAST 489
>HIS6_SULAC (Q4J8I9) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 249 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 7/59 (11%) Frame = +3 Query: 171 VALSRPKPGVERLAVSLDLYNQGS-------ATAYDVAINDDSWPKEAFELVSGEVSKT 326 V++S + G + + V++D+ G+ + Y+ IN SW KE +L +GE+ T Sbjct: 113 VSISSAEFGSQAIVVAIDVKRIGNDYYVFTRSGKYNTGINAISWAKEVEKLGAGEILLT 171
>SYN_VIBVY (Q7MJS0) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 Query: 216 SLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVS 320 +LDL N + DV N+D + KE F VSG+++ Sbjct: 181 TLDLANLPRTESGDVDFNEDFFGKETFLTVSGQLN 215
>SYN_VIBVU (Q8DAF0) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 Query: 216 SLDLYNQGSATAYDVAINDDSWPKEAFELVSGEVS 320 +LDL N + DV N+D + KE F VSG+++ Sbjct: 181 TLDLANLPRTESGDVDFNEDFFGKETFLTVSGQLN 215
>EFG2_COLP3 (Q47UW3) Elongation factor G 2 (EF-G 2)| Length = 699 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -2 Query: 317 DLSRDKFKCFLGPRVVINGHIICSCGS 237 DL+ ++ K L R + N I+CSCGS Sbjct: 242 DLTEEEIKVGLRARTLANEIILCSCGS 268
>FTSQ_HAEIN (P45067) Cell division protein ftsQ homolog| Length = 254 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = -1 Query: 327 KSLRPLQRQVQMLPWAKS---RH*WPHHMQL 244 + + P+Q Q++ LPW K R WP+ + + Sbjct: 89 QDVAPIQEQIEALPWVKGAIVRKMWPNRLSI 119
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -3 Query: 388 CVLLSNTNACEAVAPGSSLSKVFETSPETSSNAS 287 CV S+T A A + SSLS +S TSS+ S Sbjct: 133 CVSTSSTTAAAATSSTSSLSSSSSSSSSTSSSTS 166
>CPPM_ARATH (O49290) Putative carboxyvinyl-carboxyphosphonate phosphorylmutase| (EC 2.7.8.23) (Carboxyphosphonoenolpyruvate phosphonomutase) (CPEP phosphonomutase) Length = 335 Score = 27.3 bits (59), Expect = 9.1 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Frame = +3 Query: 150 FLVAHKKVALSRPKPGVERLAVSLDLYNQGSATAYDV-AINDDSWPKEAFELVSGEVSKT 326 FLVA V + K G+E ++LY + A A V A DD KE + G + Sbjct: 185 FLVARTDVRATSAKSGLEDAIARVNLYMEAGADASFVEAPRDDDELKEIGKRTKG--YRV 242 Query: 327 LERLEPGATASH 362 +E G T H Sbjct: 243 CNMIEGGVTPLH 254 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,804,090 Number of Sequences: 219361 Number of extensions: 531099 Number of successful extensions: 1959 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1932 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1958 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
