ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187875.1| Oryza sativa (japonica cultivar-group), Ozsa831... 117 3e-23
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
3dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
4dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
5dbj|AK108904.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
6gb|AE009832.1|AE009832 Pyrobaculum aerophilum strain IM2 section... 44 0.38
7gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 42 1.5
8ref|XM_466075.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
9ref|XM_542294.2| PREDICTED: Canis familiaris similar to beta-1,3... 42 1.5
10gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 1.5
11emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete ... 42 1.5
12emb|AL672112.1|MLO672112 Mesorhizobium loti R7A symbiosis island... 42 1.5
13emb|AL596181.10| Mouse DNA sequence from clone RP23-234K24 on ch... 42 1.5
14gb|AE005788.1| Caulobacter crescentus CB15 section 114 of 359 of... 42 1.5
15gb|AE011676.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.5
16gb|AE012344.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 1.5
17gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 1.5
18dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
19gb|AC011520.3|AC011520 Homo sapiens chromosome 19 clone LLNLF-20... 42 1.5
20dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
21gb|AY691905.1| Uncultured bacterium clone HZ20 unknown sequence 42 1.5
22dbj|AK100984.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
23emb|AM181327.1| Zea mays mRNA for putative glycosyltransferase (... 42 1.5
24gb|AC004780.1|AC004780 Homo sapiens chromosome 19, cosmid F17127... 42 1.5
25ref|NM_188506.1| Oryza sativa (japonica cultivar-group), Ozsa817... 40 5.9
26gb|AE017136.1| Yersinia pestis biovar Medievalis str. 91001 sect... 40 5.9
27ref|XM_603221.2| PREDICTED: Bos taurus similar to Collagen alpha... 40 5.9
28gb|AE009952.1| Yersinia pestis KIM, complete genome 40 5.9
29ref|XM_540115.2| PREDICTED: Canis familiaris hypothetical LOC483... 40 5.9
30ref|XM_723598.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 5.9
31emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 40 5.9
32emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.9
33emb|BX640433.1| Bordetella parapertussis strain 12822, complete ... 40 5.9
34emb|BX640418.1| Bordetella pertussis strain Tohama I, complete g... 40 5.9
35emb|AJ414153.1| Yersinia pestis strain CO92 complete genome; seg... 40 5.9
36gb|U65001.3|SSU65001 Sphingomonas xenophaga strain BN6 putative ... 40 5.9
37ref|XM_684433.1| PREDICTED: Danio rerio similar to Pyridoxal pho... 40 5.9
38gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.9
39gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 5.9
40dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
41dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
42gb|AE005009.1| Halobacterium sp. NRC-1 section 40 of 170 of the ... 40 5.9 
>ref|NM_187875.1| Oryza sativa (japonica cultivar-group), Ozsa8319 predicted mRNA
          Length = 882

 Score =  117 bits (59), Expect = 3e-23
 Identities = 83/91 (91%)
 Strand = Plus / Plus

                                                                       
Query: 245 cgctctccgtgctctgcggcctcgtcagcttcatcctctgcctcgccgccgagggctcgc 304
           ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct: 98  cgctctcggtgctctgcggcatcgtcggcttcatcctctgcctcgccgccgaggggtcgc 157

                                          
Query: 305 gctccgaggtgtctaactacctgatgaccgt 335
           ||||||||| |||  ||||||| ||||||||
Sbjct: 158 gctccgaggcgtcgcactacctcatgaccgt 188



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                       
Query: 351 gcaggtggagctgtgcttctacaacggcagcggccggtcggcgctcgccttctccatcgg 410
           |||||||||  | ||||||||||||  |||||||||| || |||| || ||| |||||||
Sbjct: 225 gcaggtggacgtctgcttctacaactccagcggccgggcgccgctggcgttcgccatcgg 284

                                         
Query: 411 cgccttcctgctgctggccgtcgccatgtt 440
            || |||||| |||| ||||||||||||||
Sbjct: 285 ggcgttcctgatgctcgccgtcgccatgtt 314



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                 
Query: 155 cggccgtgacgcacgacgacctgtccctccgcaaggcgcaggagcggcgggcgg 208
           |||| |||||||||||||||||||| || || |||||||||||| |||||||||
Sbjct: 8   cggcggtgacgcacgacgacctgtcgctgcggaaggcgcaggagaggcgggcgg 61
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  117 bits (59), Expect = 3e-23
 Identities = 83/91 (91%)
 Strand = Plus / Minus

                                                                           
Query: 245     cgctctccgtgctctgcggcctcgtcagcttcatcctctgcctcgccgccgagggctcgc 304
               ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct: 8387682 cgctctcggtgctctgcggcatcgtcggcttcatcctctgcctcgccgccgaggggtcgc 8387623

                                              
Query: 305     gctccgaggtgtctaactacctgatgaccgt 335
               ||||||||| |||  ||||||| ||||||||
Sbjct: 8387622 gctccgaggcgtcgcactacctcatgaccgt 8387592



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                     
Query: 155     cggccgtgacgcacgacgacctgtccctccgcaaggcgcaggagcggcgggcgg 208
               |||| |||||||||||||||||||| || || |||||||||||| |||||||||
Sbjct: 8387772 cggcggtgacgcacgacgacctgtcgctgcggaaggcgcaggagaggcgggcgg 8387719



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                           
Query: 351     gcaggtggagctgtgcttctacaacggcagcggccggtcggcgctcgccttctccatcgg 410
               |||||||||  | ||||||||||||  |||||||||| || |||| || ||| |||||||
Sbjct: 8387555 gcaggtggacgtctgcttctacaactccagcggccgggcgccgctggcgttcgccatcgg 8387496

                                             
Query: 411     cgccttcctgctgctggccgtcgccatgtt 440
                || |||||| |||| ||||||||||||||
Sbjct: 8387495 ggcgttcctgatgctcgccgtcgccatgtt 8387466



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 396     cgccttctccatcggcgccttcct 419
               ||||||| ||||||||||||||||
Sbjct: 6649035 cgccttcgccatcggcgccttcct 6649058
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>dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0503G09
          Length = 59843

 Score =  117 bits (59), Expect = 3e-23
 Identities = 83/91 (91%)
 Strand = Plus / Minus

                                                                         
Query: 245   cgctctccgtgctctgcggcctcgtcagcttcatcctctgcctcgccgccgagggctcgc 304
             ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct: 52308 cgctctcggtgctctgcggcatcgtcggcttcatcctctgcctcgccgccgaggggtcgc 52249

                                            
Query: 305   gctccgaggtgtctaactacctgatgaccgt 335
             ||||||||| |||  ||||||| ||||||||
Sbjct: 52248 gctccgaggcgtcgcactacctcatgaccgt 52218



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                   
Query: 155   cggccgtgacgcacgacgacctgtccctccgcaaggcgcaggagcggcgggcgg 208
             |||| |||||||||||||||||||| || || |||||||||||| |||||||||
Sbjct: 52398 cggcggtgacgcacgacgacctgtcgctgcggaaggcgcaggagaggcgggcgg 52345



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                         
Query: 351   gcaggtggagctgtgcttctacaacggcagcggccggtcggcgctcgccttctccatcgg 410
             |||||||||  | ||||||||||||  |||||||||| || |||| || ||| |||||||
Sbjct: 52181 gcaggtggacgtctgcttctacaactccagcggccgggcgccgctggcgttcgccatcgg 52122

                                           
Query: 411   cgccttcctgctgctggccgtcgccatgtt 440
              || |||||| |||| ||||||||||||||
Sbjct: 52121 ggcgttcctgatgctcgccgtcgccatgtt 52092
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>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
            clone:P0705D01
          Length = 147174

 Score =  117 bits (59), Expect = 3e-23
 Identities = 83/91 (91%)
 Strand = Plus / Minus

                                                                        
Query: 245  cgctctccgtgctctgcggcctcgtcagcttcatcctctgcctcgccgccgagggctcgc 304
            ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct: 2637 cgctctcggtgctctgcggcatcgtcggcttcatcctctgcctcgccgccgaggggtcgc 2578

                                           
Query: 305  gctccgaggtgtctaactacctgatgaccgt 335
            ||||||||| |||  ||||||| ||||||||
Sbjct: 2577 gctccgaggcgtcgcactacctcatgaccgt 2547



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                  
Query: 155  cggccgtgacgcacgacgacctgtccctccgcaaggcgcaggagcggcgggcgg 208
            |||| |||||||||||||||||||| || || |||||||||||| |||||||||
Sbjct: 2727 cggcggtgacgcacgacgacctgtcgctgcggaaggcgcaggagaggcgggcgg 2674



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                        
Query: 351  gcaggtggagctgtgcttctacaacggcagcggccggtcggcgctcgccttctccatcgg 410
            |||||||||  | ||||||||||||  |||||||||| || |||| || ||| |||||||
Sbjct: 2510 gcaggtggacgtctgcttctacaactccagcggccgggcgccgctggcgttcgccatcgg 2451

                                          
Query: 411  cgccttcctgctgctggccgtcgccatgtt 440
             || |||||| |||| ||||||||||||||
Sbjct: 2450 ggcgttcctgatgctcgccgtcgccatgtt 2421
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>dbj|AK108904.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-F09, full
           insert sequence
          Length = 1186

 Score =  117 bits (59), Expect = 3e-23
 Identities = 83/91 (91%)
 Strand = Plus / Plus

                                                                       
Query: 245 cgctctccgtgctctgcggcctcgtcagcttcatcctctgcctcgccgccgagggctcgc 304
           ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct: 178 cgctctcggtgctctgcggcatcgtcggcttcatcctctgcctcgccgccgaggggtcgc 237

                                          
Query: 305 gctccgaggtgtctaactacctgatgaccgt 335
           ||||||||| |||  ||||||| ||||||||
Sbjct: 238 gctccgaggcgtcgcactacctcatgaccgt 268



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                       
Query: 351 gcaggtggagctgtgcttctacaacggcagcggccggtcggcgctcgccttctccatcgg 410
           |||||||||  | ||||||||||||  |||||||||| || |||| || ||| |||||||
Sbjct: 305 gcaggtggacgtctgcttctacaactccagcggccgggcgccgctggcgttcgccatcgg 364

                                         
Query: 411 cgccttcctgctgctggccgtcgccatgtt 440
            || |||||| |||| ||||||||||||||
Sbjct: 365 ggcgttcctgatgctcgccgtcgccatgtt 394



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                 
Query: 155 cggccgtgacgcacgacgacctgtccctccgcaaggcgcaggagcggcgggcgg 208
           |||| |||||||||||||||||||| || || |||||||||||| |||||||||
Sbjct: 88  cggcggtgacgcacgacgacctgtcgctgcggaaggcgcaggagaggcgggcgg 141
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>gb|AE009832.1|AE009832 Pyrobaculum aerophilum strain IM2 section 87 of 201 of the complete
            genome
          Length = 11353

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 279  cctctgcctcgccgccgagggc 300
            ||||||||||||||||||||||
Sbjct: 9520 cctctgcctcgccgccgagggc 9541
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 181     ctccgcaaggcgcaggagcgg 201
               |||||||||||||||||||||
Sbjct: 2212235 ctccgcaaggcgcaggagcgg 2212215
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>ref|XM_466075.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1910

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 251 ccgtgctctgcggcctcgtca 271
           |||||||||||||||||||||
Sbjct: 449 ccgtgctctgcggcctcgtca 469
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>ref|XM_542294.2| PREDICTED: Canis familiaris similar to
           beta-1,3-N-acetylglucosaminyltransferase protein
           (LOC485176), mRNA
          Length = 1383

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 412 gccttcctgctgctggccgtc 432
           |||||||||||||||||||||
Sbjct: 373 gccttcctgctgctggccgtc 393
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 223     cagatcgccgtcggcctcgtcgcgc 247
               |||| ||||||||||||||||||||
Sbjct: 1176501 cagaccgccgtcggcctcgtcgcgc 1176525



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 225     gatcgccgtcggcctcgtcg 244
               ||||||||||||||||||||
Sbjct: 1279905 gatcgccgtcggcctcgtcg 1279886
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>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29
          Length = 308050

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 225    gatcgccgtcggcctcgtcgc 245
              |||||||||||||||||||||
Sbjct: 105921 gatcgccgtcggcctcgtcgc 105941
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>emb|AL672112.1|MLO672112 Mesorhizobium loti R7A symbiosis island; segment 1/4
          Length = 150050

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 416   tcctgctgctggccgtcgccatgtt 440
             |||||||||||||||||| ||||||
Sbjct: 93718 tcctgctgctggccgtcggcatgtt 93742
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>emb|AL596181.10| Mouse DNA sequence from clone RP23-234K24 on chromosome 11 Contains
             nine novel genes, the Trpv2 for member 2 transient
             receptor potential cation channel subfamily V, the Ubb
             gene for ubiquitin B, the 3' end of the gene for the
             ortholog of human and rat phosphatidylinositol glycan
             class L PIGL and five CpG islands, complete sequence
          Length = 195339

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 203   gggcggggcgctccgggagcc 223
             |||||||||||||||||||||
Sbjct: 26060 gggcggggcgctccgggagcc 26040
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>gb|AE005788.1| Caulobacter crescentus CB15 section 114 of 359 of the complete genome
          Length = 13332

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 408  cggcgccttcctgctgctggccgtcgcca 436
            |||||||||||||| ||||||| ||||||
Sbjct: 1342 cggcgccttcctgccgctggccttcgcca 1370
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>gb|AE011676.1| Xanthomonas axonopodis pv. citri str. 306,  section 54 of 469 of the
            complete genome
          Length = 10144

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 414  cttcctgctgctggccgtcgccatg 438
            |||||||||||||||||||| ||||
Sbjct: 4300 cttcctgctgctggccgtcgacatg 4276
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>gb|AE012344.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 252
            of 460 of the complete genome
          Length = 10029

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 402  ctccatcggcgccttcctgctgctg 426
            ||||||||||||| |||||||||||
Sbjct: 4778 ctccatcggcgccgtcctgctgctg 4802
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 402     ctccatcggcgccttcctgctgctg 426
               ||||||||||||| |||||||||||
Sbjct: 2134007 ctccatcggcgccgtcctgctgctg 2133983
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 251      ccgtgctctgcggcctcgtca 271
                |||||||||||||||||||||
Sbjct: 19472530 ccgtgctctgcggcctcgtca 19472510
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>gb|AC011520.3|AC011520 Homo sapiens chromosome 19 clone LLNLF-205H1, complete sequence
          Length = 42718

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 198   gcggcgggcggggcgctccgg 218
             |||||||||||||||||||||
Sbjct: 17879 gcggcgggcggggcgctccgg 17859
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>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0476H10
          Length = 151703

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 251   ccgtgctctgcggcctcgtca 271
             |||||||||||||||||||||
Sbjct: 90057 ccgtgctctgcggcctcgtca 90037
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>gb|AY691905.1| Uncultured bacterium clone HZ20 unknown sequence
          Length = 3255

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 228 cgccgtcggcctcgtcgcgct 248
           |||||||||||||||||||||
Sbjct: 276 cgccgtcggcctcgtcgcgct 296
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>dbj|AK100984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145D01, full
           insert sequence
          Length = 1910

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 251 ccgtgctctgcggcctcgtca 271
           |||||||||||||||||||||
Sbjct: 449 ccgtgctctgcggcctcgtca 469
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>emb|AM181327.1| Zea mays mRNA for putative glycosyltransferase (x34.2 gene)
          Length = 2130

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 251 ccgtgctctgcggcctcgtca 271
           |||||||||||||||||||||
Sbjct: 526 ccgtgctctgcggcctcgtca 546
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>gb|AC004780.1|AC004780 Homo sapiens chromosome 19, cosmid F17127, complete sequence
          Length = 37218

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 198   gcggcgggcggggcgctccgg 218
             |||||||||||||||||||||
Sbjct: 31492 gcggcgggcggggcgctccgg 31472
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>ref|NM_188506.1| Oryza sativa (japonica cultivar-group), Ozsa8175 predicted mRNA
          Length = 240

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 396 cgccttctccatcggcgccttcct 419
           ||||||| ||||||||||||||||
Sbjct: 183 cgccttcgccatcggcgccttcct 206
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>gb|AE017136.1| Yersinia pestis biovar Medievalis str. 91001 section 10 of 16 of the
              complete genome
          Length = 290294

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 417    cctgctgctggccgtcgccatgtt 440
              |||||||||||||| |||||||||
Sbjct: 152066 cctgctgctggccgccgccatgtt 152043
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>ref|XM_603221.2| PREDICTED: Bos taurus similar to Collagen alpha 1(XVIII) chain
            precursor (LOC524883), mRNA
          Length = 1449

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 336  ggccgggagcgaggcgcagg 355
            ||||||||||||||||||||
Sbjct: 1362 ggccgggagcgaggcgcagg 1343
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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 417     cctgctgctggccgtcgccatgtt 440
               |||||||||||||| |||||||||
Sbjct: 1414438 cctgctgctggccgccgccatgtt 1414415
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>ref|XM_540115.2| PREDICTED: Canis familiaris hypothetical LOC483000 (LOC483000), mRNA
          Length = 2421

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 279  cctctgcctcgccgccgagg 298
            ||||||||||||||||||||
Sbjct: 1110 cctctgcctcgccgccgagg 1129
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>ref|XM_723598.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07734)
           partial mRNA
          Length = 1677

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 407 tcggcgccttcctgctgctggccg 430
           ||||| ||||||||||||||||||
Sbjct: 153 tcggccccttcctgctgctggccg 130
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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 417     cctgctgctggccgtcgccatgtt 440
               |||||||||||||| |||||||||
Sbjct: 3448098 cctgctgctggccgccgccatgtt 3448121
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>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    gagcggcgggcggggcgctc 215
              ||||||||||||||||||||
Sbjct: 346713 gagcggcgggcggggcgctc 346694
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>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    gagcggcgggcggggcgctc 215
              ||||||||||||||||||||
Sbjct: 285710 gagcggcgggcggggcgctc 285691
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>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12
          Length = 349346

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    gagcggcgggcggggcgctc 215
              ||||||||||||||||||||
Sbjct: 211166 gagcggcgggcggggcgctc 211147
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>emb|AJ414153.1| Yersinia pestis strain CO92 complete genome; segment 13/20
          Length = 258050

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 417    cctgctgctggccgtcgccatgtt 440
              |||||||||||||| |||||||||
Sbjct: 106523 cctgctgctggccgccgccatgtt 106500
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>gb|U65001.3|SSU65001 Sphingomonas xenophaga strain BN6 putative insertion sequence
             ATP-binding protein gene, partial cds; IS element-like
             sequence, putative transposase, putative
             1,2-dihydrodiol-1,2-dihydroxy-dehydrogenase,
             salicylaldehyde dehydrogenase (nsaF), putative
             aromatic-ring hydroxylating dioxygenase alpha-subunit,
             1,2-dihydroxynaphthalene dioxygenase (nsaC),
             naphthalenesulfonate dioxygenase ferredoxin subunit
             (nsaA3), putative aromatic-ring hydroxylating dioxygenase
             beta-subunit, 2-hydroxychromene-2-carboxylate isomerase
             (nsaD), 2'-hydroxybenzalpyruvate-aldolase (nsaE), putative
             transposase, naphthalenesulfonate dioxygenase reductase
             subunit (nsaA4), and putative resolvase genes, complete
             cds; and unknown genes
          Length = 16915

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   gccggtcggcgctcgccttc 402
             ||||||||||||||||||||
Sbjct: 13876 gccggtcggcgctcgccttc 13895
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>ref|XM_684433.1| PREDICTED: Danio rerio similar to Pyridoxal phosphate phosphatase
           (PLP phosphatase) (LOC561030), mRNA
          Length = 927

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 412 gccttcctgctgctggccgt 431
           ||||||||||||||||||||
Sbjct: 647 gccttcctgctgctggccgt 628
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 407     tcggcgccttcctgctgctggccg 430
               ||||||||||||||| ||||||||
Sbjct: 3957648 tcggcgccttcctgcggctggccg 3957625
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 407    tcggcgccttcctgctgctggccg 430
              ||||| ||||||||||||||||||
Sbjct: 416234 tcggccccttcctgctgctggccg 416211
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>dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0443E05
          Length = 176935

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 396  cgccttctccatcggcgccttcct 419
            ||||||| ||||||||||||||||
Sbjct: 1187 cgccttcgccatcggcgccttcct 1210
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>dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0483F08
          Length = 148985

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 396    cgccttctccatcggcgccttcct 419
              ||||||| ||||||||||||||||
Sbjct: 129206 cgccttcgccatcggcgccttcct 129229
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>gb|AE005009.1| Halobacterium sp. NRC-1 section 40 of 170 of the complete genome
          Length = 10525

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 227 tcgccgtcggcctcgtcgcgctct 250
           ||||||||| ||||||||||||||
Sbjct: 756 tcgccgtcgccctcgtcgcgctct 733


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,721,206
Number of Sequences: 3902068
Number of extensions: 2721206
Number of successful extensions: 61281
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60644
Number of HSP's gapped (non-prelim): 637
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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