ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart49h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC107734.13| Mus musculus chromosome 7, clone RP23-399E4, com... 44 0.49
2ref|XM_523173.1| PREDICTED: Pan troglodytes LOC467778 (LOC467778... 42 1.9
3ref|XM_615429.2| PREDICTED: Bos taurus similar to Metabotropic g... 42 1.9
4gb|AC023024.6| Homo sapiens, clone RP11-299G20, complete sequence 42 1.9
5gb|AC161867.6| Mus musculus chromosome 8, clone RP24-281E22, com... 42 1.9
6gb|AC087528.15| Homo sapiens chromosome 15, clone RP11-497M17, c... 42 1.9
7dbj|AB001914.2| Homo sapiens genes for PACE4A-I, PACE4A-II, PACE... 42 1.9
8emb|AL929292.7| Zebrafish DNA sequence from clone DKEY-11L24 in ... 42 1.9
9gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, co... 42 1.9
10ref|XM_550342.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.6
11ref|XM_472010.1| Oryza sativa (japonica cultivar-group), predic... 40 7.6
12emb|AL929319.4| Zebrafish DNA sequence from clone CH211-59F17 in... 40 7.6
13emb|CR536615.10| Zebrafish DNA sequence from clone CH211-247C17 ... 40 7.6
14emb|BX936291.25| Zebrafish DNA sequence from clone DKEY-250A11 i... 40 7.6
15emb|CR388383.9| Zebrafish DNA sequence from clone CH211-179P9 in... 40 7.6
16emb|CR855267.20| Zebrafish DNA sequence from clone DKEY-220L13, ... 40 7.6
17emb|CR848747.8| Zebrafish DNA sequence from clone DKEYP-77H1 in ... 40 7.6
18emb|AL772146.4| Zebrafish DNA sequence from clone CH211-12P8 in ... 40 7.6
19emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4,... 40 7.6
20emb|CR457484.9| Zebrafish DNA sequence from clone CH211-132F3 in... 40 7.6
21dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 7.6
22gb|AC095353.9| Homo sapiens Xp BAC RP11-615L18 (Roswell Park Can... 40 7.6
23dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
24dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
25gb|AC069553.6|AC069553 Genomic Sequence For Arabidopsis thaliana... 40 7.6
26dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
27dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
28emb|AL954847.17| Zebrafish DNA sequence from clone DKEY-68G8 in ... 40 7.6
29dbj|AB046441.1| Arabidopsis thaliana DNA, chromosome 5 centromer... 40 7.6
30dbj|AK058023.1| Homo sapiens cDNA FLJ25294 fis, clone STM07436 40 7.6
31dbj|AK106234.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
32dbj|AK102622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6
33emb|AL935173.9| Zebrafish DNA sequence from clone CH211-196D9, c... 40 7.6

>gb|AC107734.13| Mus musculus chromosome 7, clone RP23-399E4, complete sequence
          Length = 198485

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 326   ctattcacttctgcacccatagcaca 351
             ||||| ||||||||||||||||||||
Sbjct: 78792 ctatttacttctgcacccatagcaca 78817



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>ref|XM_523173.1| PREDICTED: Pan troglodytes LOC467778 (LOC467778), mRNA
          Length = 9588

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 151  gctgagccctcccttctcccc 171
            |||||||||||||||||||||
Sbjct: 6357 gctgagccctcccttctcccc 6377



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>ref|XM_615429.2| PREDICTED: Bos taurus similar to Metabotropic glutamate receptor 7
            precursor (mGluR7) (LOC535362), mRNA
          Length = 3431

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 28   tcccaacatggcaagaaagac 48
            |||||||||||||||||||||
Sbjct: 1308 tcccaacatggcaagaaagac 1288



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>gb|AC023024.6| Homo sapiens, clone RP11-299G20, complete sequence
          Length = 183671

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 151    gctgagccctcccttctcccc 171
              |||||||||||||||||||||
Sbjct: 177937 gctgagccctcccttctcccc 177917



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>gb|AC161867.6| Mus musculus chromosome 8, clone RP24-281E22, complete sequence
          Length = 180410

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 30    ccaacatggcaagaaagaccc 50
             |||||||||||||||||||||
Sbjct: 15423 ccaacatggcaagaaagaccc 15443



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>gb|AC087528.15| Homo sapiens chromosome 15, clone RP11-497M17, complete sequence
          Length = 142965

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 151    gctgagccctcccttctcccc 171
              |||||||||||||||||||||
Sbjct: 122793 gctgagccctcccttctcccc 122813



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>dbj|AB001914.2| Homo sapiens genes for PACE4A-I, PACE4A-II, PACE4E-II, PACE4E-I,
             PACE4C, PACE4CS, PACE4B, PACE4D, complete cds
          Length = 55640

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 151   gctgagccctcccttctcccc 171
             |||||||||||||||||||||
Sbjct: 28277 gctgagccctcccttctcccc 28297



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>emb|AL929292.7| Zebrafish DNA sequence from clone DKEY-11L24 in linkage group 14,
             complete sequence
          Length = 218922

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 448   tatgcagatatgtgaacaatt 468
             |||||||||||||||||||||
Sbjct: 97653 tatgcagatatgtgaacaatt 97633



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>gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, complete sequence
          Length = 178228

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 30     ccaacatggcaagaaagaccc 50
              |||||||||||||||||||||
Sbjct: 143558 ccaacatggcaagaaagaccc 143578



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>ref|XM_550342.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1834

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 181 ttgcggccgccttggcgctg 200
           ||||||||||||||||||||
Sbjct: 509 ttgcggccgccttggcgctg 528



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>ref|XM_472010.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1902

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 326 ctattcacttctgcacccat 345
           ||||||||||||||||||||
Sbjct: 298 ctattcacttctgcacccat 317



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>emb|AL929319.4| Zebrafish DNA sequence from clone CH211-59F17 in linkage group 10,
              complete sequence
          Length = 194614

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    agatatgtgaacaattcatg 472
              ||||||||||||||||||||
Sbjct: 168359 agatatgtgaacaattcatg 168378



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>emb|CR536615.10| Zebrafish DNA sequence from clone CH211-247C17 in linkage group 1,
              complete sequence
          Length = 153688

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    agatatgtgaacaattcatg 472
              ||||||||||||||||||||
Sbjct: 131074 agatatgtgaacaattcatg 131093



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>emb|BX936291.25| Zebrafish DNA sequence from clone DKEY-250A11 in linkage group 13,
             complete sequence
          Length = 195395

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   agatatgtgaacaattcatg 472
             ||||||||||||||||||||
Sbjct: 10036 agatatgtgaacaattcatg 10017



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>emb|CR388383.9| Zebrafish DNA sequence from clone CH211-179P9 in linkage group 16,
              complete sequence
          Length = 145770

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 453    agatatgtgaacaattcatg 472
              ||||||||||||||||||||
Sbjct: 121503 agatatgtgaacaattcatg 121484



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>emb|CR855267.20| Zebrafish DNA sequence from clone DKEY-220L13, complete sequence
          Length = 142801

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   cctcccttctcccctgtccg 177
             ||||||||||||||||||||
Sbjct: 35549 cctcccttctcccctgtccg 35568



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>emb|CR848747.8| Zebrafish DNA sequence from clone DKEYP-77H1 in linkage group 16,
              complete sequence
          Length = 182850

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    agatatgtgaacaattcatg 472
              ||||||||||||||||||||
Sbjct: 100465 agatatgtgaacaattcatg 100484



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>emb|AL772146.4| Zebrafish DNA sequence from clone CH211-12P8 in linkage group 7 Contains
              part of a novel gene similar to SCRIB (scrribble), a novel
              gene similar to SIAHBP1 (fuse-binding protein-interacting
              repressor), a novel gene similar to HTR5A
              (5-hydroxytryptamine (serotonin) receptor 5A) and three CpG
              islands, complete sequence
          Length = 187241

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 453    agatatgtgaacaattcatg 472
              ||||||||||||||||||||
Sbjct: 117316 agatatgtgaacaattcatg 117297



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>emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02,
             complete sequence
          Length = 172435

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   ctattcacttctgcacccat 345
             ||||||||||||||||||||
Sbjct: 97152 ctattcacttctgcacccat 97171



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>emb|CR457484.9| Zebrafish DNA sequence from clone CH211-132F3 in linkage group 18,
             complete sequence
          Length = 169672

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   agatatgtgaacaattcatg 472
             ||||||||||||||||||||
Sbjct: 65842 agatatgtgaacaattcatg 65861



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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 407     ggttcatttagcttattgcgaatg 430
               |||||||||||| |||||||||||
Sbjct: 2340427 ggttcatttagcatattgcgaatg 2340404



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>gb|AC095353.9| Homo sapiens Xp BAC RP11-615L18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 142000

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 329    ttcacttctgcacccatagcacag 352
              ||||||||||| ||||||||||||
Sbjct: 100081 ttcacttctgctcccatagcacag 100058



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 326      ctattcacttctgcacccat 345
                ||||||||||||||||||||
Sbjct: 16567919 ctattcacttctgcacccat 16567938



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 156     gccctcccttctcccctgtc 175
               ||||||||||||||||||||
Sbjct: 7767679 gccctcccttctcccctgtc 7767698



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 181     ttgcggccgccttggcgctg 200
               ||||||||||||||||||||
Sbjct: 3134580 ttgcggccgccttggcgctg 3134599



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 181     ttgcggccgccttggcgctg 200
               ||||||||||||||||||||
Sbjct: 3130721 ttgcggccgccttggcgctg 3130740



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>gb|AC069553.6|AC069553 Genomic Sequence For Arabidopsis thaliana Clone F18A12 From Chromosome V,
              complete sequence
          Length = 133529

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 463    acaattcatgattggatttc 482
              ||||||||||||||||||||
Sbjct: 103236 acaattcatgattggatttc 103255



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>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
             clone:P0681F10
          Length = 170371

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   ttgcggccgccttggcgctg 200
             ||||||||||||||||||||
Sbjct: 88765 ttgcggccgccttggcgctg 88784



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   ttgcggccgccttggcgctg 200
             ||||||||||||||||||||
Sbjct: 84906 ttgcggccgccttggcgctg 84925



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>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0091G06
          Length = 161851

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   gccctcccttctcccctgtc 175
             ||||||||||||||||||||
Sbjct: 80177 gccctcccttctcccctgtc 80196



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>emb|AL954847.17| Zebrafish DNA sequence from clone DKEY-68G8 in linkage group 13, complete
              sequence
          Length = 278040

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    agatatgtgaacaattcatg 472
              ||||||||||||||||||||
Sbjct: 211852 agatatgtgaacaattcatg 211871



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>dbj|AB046441.1| Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:T15D5
          Length = 75370

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   acaattcatgattggatttc 482
             ||||||||||||||||||||
Sbjct: 16890 acaattcatgattggatttc 16909



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>dbj|AK058023.1| Homo sapiens cDNA FLJ25294 fis, clone STM07436
          Length = 2796

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 268 gaggctgaaaggggaagagc 287
           ||||||||||||||||||||
Sbjct: 85  gaggctgaaaggggaagagc 104



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>dbj|AK106234.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B09, full
           insert sequence
          Length = 1834

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 181 ttgcggccgccttggcgctg 200
           ||||||||||||||||||||
Sbjct: 509 ttgcggccgccttggcgctg 528



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>dbj|AK102622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099H13, full
           insert sequence
          Length = 2291

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 326 ctattcacttctgcacccat 345
           ||||||||||||||||||||
Sbjct: 299 ctattcacttctgcacccat 318



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>emb|AL935173.9| Zebrafish DNA sequence from clone CH211-196D9, complete sequence
          Length = 205213

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   agatatgtgaacaattcatg 472
             ||||||||||||||||||||
Sbjct: 20236 agatatgtgaacaattcatg 20217


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,638,451
Number of Sequences: 3902068
Number of extensions: 3638451
Number of successful extensions: 69188
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69042
Number of HSP's gapped (non-prelim): 146
length of query: 563
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 540
effective length of database: 17,143,297,704
effective search space: 9257380760160
effective search space used: 9257380760160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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