| Clone Name | bart49h05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC107734.13| Mus musculus chromosome 7, clone RP23-399E4, complete sequence Length = 198485 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 326 ctattcacttctgcacccatagcaca 351 ||||| |||||||||||||||||||| Sbjct: 78792 ctatttacttctgcacccatagcaca 78817
>ref|XM_523173.1| PREDICTED: Pan troglodytes LOC467778 (LOC467778), mRNA Length = 9588 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 gctgagccctcccttctcccc 171 ||||||||||||||||||||| Sbjct: 6357 gctgagccctcccttctcccc 6377
>ref|XM_615429.2| PREDICTED: Bos taurus similar to Metabotropic glutamate receptor 7 precursor (mGluR7) (LOC535362), mRNA Length = 3431 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 tcccaacatggcaagaaagac 48 ||||||||||||||||||||| Sbjct: 1308 tcccaacatggcaagaaagac 1288
>gb|AC023024.6| Homo sapiens, clone RP11-299G20, complete sequence Length = 183671 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 gctgagccctcccttctcccc 171 ||||||||||||||||||||| Sbjct: 177937 gctgagccctcccttctcccc 177917
>gb|AC161867.6| Mus musculus chromosome 8, clone RP24-281E22, complete sequence Length = 180410 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 ccaacatggcaagaaagaccc 50 ||||||||||||||||||||| Sbjct: 15423 ccaacatggcaagaaagaccc 15443
>gb|AC087528.15| Homo sapiens chromosome 15, clone RP11-497M17, complete sequence Length = 142965 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 gctgagccctcccttctcccc 171 ||||||||||||||||||||| Sbjct: 122793 gctgagccctcccttctcccc 122813
>dbj|AB001914.2| Homo sapiens genes for PACE4A-I, PACE4A-II, PACE4E-II, PACE4E-I, PACE4C, PACE4CS, PACE4B, PACE4D, complete cds Length = 55640 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 gctgagccctcccttctcccc 171 ||||||||||||||||||||| Sbjct: 28277 gctgagccctcccttctcccc 28297
>emb|AL929292.7| Zebrafish DNA sequence from clone DKEY-11L24 in linkage group 14, complete sequence Length = 218922 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 tatgcagatatgtgaacaatt 468 ||||||||||||||||||||| Sbjct: 97653 tatgcagatatgtgaacaatt 97633
>gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, complete sequence Length = 178228 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 ccaacatggcaagaaagaccc 50 ||||||||||||||||||||| Sbjct: 143558 ccaacatggcaagaaagaccc 143578
>ref|XM_550342.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1834 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ttgcggccgccttggcgctg 200 |||||||||||||||||||| Sbjct: 509 ttgcggccgccttggcgctg 528
>ref|XM_472010.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1902 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 ctattcacttctgcacccat 345 |||||||||||||||||||| Sbjct: 298 ctattcacttctgcacccat 317
>emb|AL929319.4| Zebrafish DNA sequence from clone CH211-59F17 in linkage group 10, complete sequence Length = 194614 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 agatatgtgaacaattcatg 472 |||||||||||||||||||| Sbjct: 168359 agatatgtgaacaattcatg 168378
>emb|CR536615.10| Zebrafish DNA sequence from clone CH211-247C17 in linkage group 1, complete sequence Length = 153688 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 agatatgtgaacaattcatg 472 |||||||||||||||||||| Sbjct: 131074 agatatgtgaacaattcatg 131093
>emb|BX936291.25| Zebrafish DNA sequence from clone DKEY-250A11 in linkage group 13, complete sequence Length = 195395 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 agatatgtgaacaattcatg 472 |||||||||||||||||||| Sbjct: 10036 agatatgtgaacaattcatg 10017
>emb|CR388383.9| Zebrafish DNA sequence from clone CH211-179P9 in linkage group 16, complete sequence Length = 145770 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 agatatgtgaacaattcatg 472 |||||||||||||||||||| Sbjct: 121503 agatatgtgaacaattcatg 121484
>emb|CR855267.20| Zebrafish DNA sequence from clone DKEY-220L13, complete sequence Length = 142801 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 cctcccttctcccctgtccg 177 |||||||||||||||||||| Sbjct: 35549 cctcccttctcccctgtccg 35568
>emb|CR848747.8| Zebrafish DNA sequence from clone DKEYP-77H1 in linkage group 16, complete sequence Length = 182850 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 agatatgtgaacaattcatg 472 |||||||||||||||||||| Sbjct: 100465 agatatgtgaacaattcatg 100484
>emb|AL772146.4| Zebrafish DNA sequence from clone CH211-12P8 in linkage group 7 Contains part of a novel gene similar to SCRIB (scrribble), a novel gene similar to SIAHBP1 (fuse-binding protein-interacting repressor), a novel gene similar to HTR5A (5-hydroxytryptamine (serotonin) receptor 5A) and three CpG islands, complete sequence Length = 187241 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 agatatgtgaacaattcatg 472 |||||||||||||||||||| Sbjct: 117316 agatatgtgaacaattcatg 117297
>emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence Length = 172435 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 ctattcacttctgcacccat 345 |||||||||||||||||||| Sbjct: 97152 ctattcacttctgcacccat 97171
>emb|CR457484.9| Zebrafish DNA sequence from clone CH211-132F3 in linkage group 18, complete sequence Length = 169672 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 agatatgtgaacaattcatg 472 |||||||||||||||||||| Sbjct: 65842 agatatgtgaacaattcatg 65861
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 407 ggttcatttagcttattgcgaatg 430 |||||||||||| ||||||||||| Sbjct: 2340427 ggttcatttagcatattgcgaatg 2340404
>gb|AC095353.9| Homo sapiens Xp BAC RP11-615L18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 142000 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 329 ttcacttctgcacccatagcacag 352 ||||||||||| |||||||||||| Sbjct: 100081 ttcacttctgctcccatagcacag 100058
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 ctattcacttctgcacccat 345 |||||||||||||||||||| Sbjct: 16567919 ctattcacttctgcacccat 16567938
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gccctcccttctcccctgtc 175 |||||||||||||||||||| Sbjct: 7767679 gccctcccttctcccctgtc 7767698 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ttgcggccgccttggcgctg 200 |||||||||||||||||||| Sbjct: 3134580 ttgcggccgccttggcgctg 3134599 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ttgcggccgccttggcgctg 200 |||||||||||||||||||| Sbjct: 3130721 ttgcggccgccttggcgctg 3130740
>gb|AC069553.6|AC069553 Genomic Sequence For Arabidopsis thaliana Clone F18A12 From Chromosome V, complete sequence Length = 133529 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 acaattcatgattggatttc 482 |||||||||||||||||||| Sbjct: 103236 acaattcatgattggatttc 103255
>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0681F10 Length = 170371 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ttgcggccgccttggcgctg 200 |||||||||||||||||||| Sbjct: 88765 ttgcggccgccttggcgctg 88784 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ttgcggccgccttggcgctg 200 |||||||||||||||||||| Sbjct: 84906 ttgcggccgccttggcgctg 84925
>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06 Length = 161851 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gccctcccttctcccctgtc 175 |||||||||||||||||||| Sbjct: 80177 gccctcccttctcccctgtc 80196
>emb|AL954847.17| Zebrafish DNA sequence from clone DKEY-68G8 in linkage group 13, complete sequence Length = 278040 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 agatatgtgaacaattcatg 472 |||||||||||||||||||| Sbjct: 211852 agatatgtgaacaattcatg 211871
>dbj|AB046441.1| Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:T15D5 Length = 75370 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 acaattcatgattggatttc 482 |||||||||||||||||||| Sbjct: 16890 acaattcatgattggatttc 16909
>dbj|AK058023.1| Homo sapiens cDNA FLJ25294 fis, clone STM07436 Length = 2796 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gaggctgaaaggggaagagc 287 |||||||||||||||||||| Sbjct: 85 gaggctgaaaggggaagagc 104
>dbj|AK106234.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B09, full insert sequence Length = 1834 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ttgcggccgccttggcgctg 200 |||||||||||||||||||| Sbjct: 509 ttgcggccgccttggcgctg 528
>dbj|AK102622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099H13, full insert sequence Length = 2291 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 ctattcacttctgcacccat 345 |||||||||||||||||||| Sbjct: 299 ctattcacttctgcacccat 318
>emb|AL935173.9| Zebrafish DNA sequence from clone CH211-196D9, complete sequence Length = 205213 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 agatatgtgaacaattcatg 472 |||||||||||||||||||| Sbjct: 20236 agatatgtgaacaattcatg 20217 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,638,451 Number of Sequences: 3902068 Number of extensions: 3638451 Number of successful extensions: 69188 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69042 Number of HSP's gapped (non-prelim): 146 length of query: 563 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 540 effective length of database: 17,143,297,704 effective search space: 9257380760160 effective search space used: 9257380760160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)