ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart49f09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483633.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1327 Score = 387 bits (195), Expect = e-104 Identities = 395/461 (85%), Gaps = 3/461 (0%) Strand = Plus / Plus Query: 115 acgacgagcgccagtggtggccgtggctcgtgcccaccgtgctcggcgcctgcgtctcgg 174 |||| ||||| | ||||||||||||||||||||| |||||||||| |||||| || || Sbjct: 157 acgaggagcggcggtggtggccgtggctcgtgccgaccgtgctcgtggcctgcatcgtgg 216 Query: 175 tcttcgccgtcgagatgtacctcaacgactgcccccgccacgggagcaccctcggcggcg 234 | ||| ||||||||||| | |||||||||||||||||||||||||| | ||| |||||| Sbjct: 217 tgttcctcgtcgagatgttcgtcaacgactgcccccgccacgggagcccgctccgcggcg 276 Query: 235 acgcgccctgcgtcgccggtttcctccgccagttctccttccagccgctccgcgagaacc 294 | | ||||||||||||| ||||||| ||||||| |||||||||||||||| ||||||| Sbjct: 277 a---gtcctgcgtcgccggcttcctccaccagttcgccttccagccgctccgggagaacc 333 Query: 295 cgctcctcggcccctcttccgccactttggagaagatgggagctcttgactgggccaaag 354 |||||||||| ||||| |||||||||||||||||||||||||| || |||||||| || | Sbjct: 334 cgctcctcgggccctcctccgccactttggagaagatgggagcactagactgggcgaagg 393 Query: 355 ttgttcatcaacaccaatggtggcgcctattcagttgtgtctggctccatgctggcctaa 414 |||||||||| |||||| ||||| || | || ||| ||||||| ||||||||||||| Sbjct: 394 ttgttcatcagcaccaagcatggcgtctcattagctgtatctggctacatgctggcctaa 453 Query: 415 ttcacttgattgtcaacatgatgagcttgctattcataggaatccgccttgaacaacaat 474 | ||| |||||||||||||| | |||||||||||||| ||| |||| ||||| || |||| Sbjct: 454 tccacctgattgtcaacatgctaagcttgctattcatcggactccgtcttgagcagcaat 513 Query: 475 ttggctttgtccgcattgggatcatctacctgctatctggctttggtggaagtgttttgt 534 |||| ||||| || ||||| ||||||||| |||||||||||||||| || || || ||| Sbjct: 514 ttgggtttgtgcgtattggaatcatctacttgctatctggctttggcggtagcgtgctgt 573 Query: 535 ctgcactgttcttacgtaatcactacatctctgttggtgcc 575 ||| ||||| ||||||||| |||||||||| ||||||||| Sbjct: 574 ctgtgctgtttttacgtaataactacatctccgttggtgcc 614 Score = 54.0 bits (27), Expect = 5e-04 Identities = 49/54 (90%), Gaps = 3/54 (5%) Strand = Plus / Plus Query: 30 atggcgagcggcagcggcgaggggaaggcgggccgggccggcgcggggtaccag 83 ||||||||| |||||||||||||||||| | ||||| |||||||||||||||| Sbjct: 78 atggcgagcagcagcggcgaggggaagg-gtgccgg--cggcgcggggtaccag 128
>dbj|AK061056.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-H06, full insert sequence Length = 1327 Score = 387 bits (195), Expect = e-104 Identities = 395/461 (85%), Gaps = 3/461 (0%) Strand = Plus / Plus Query: 115 acgacgagcgccagtggtggccgtggctcgtgcccaccgtgctcggcgcctgcgtctcgg 174 |||| ||||| | ||||||||||||||||||||| |||||||||| |||||| || || Sbjct: 157 acgaggagcggcggtggtggccgtggctcgtgccgaccgtgctcgtggcctgcatcgtgg 216 Query: 175 tcttcgccgtcgagatgtacctcaacgactgcccccgccacgggagcaccctcggcggcg 234 | ||| ||||||||||| | |||||||||||||||||||||||||| | ||| |||||| Sbjct: 217 tgttcctcgtcgagatgttcgtcaacgactgcccccgccacgggagcccgctccgcggcg 276 Query: 235 acgcgccctgcgtcgccggtttcctccgccagttctccttccagccgctccgcgagaacc 294 | | ||||||||||||| ||||||| ||||||| |||||||||||||||| ||||||| Sbjct: 277 a---gtcctgcgtcgccggcttcctccaccagttcgccttccagccgctccgggagaacc 333 Query: 295 cgctcctcggcccctcttccgccactttggagaagatgggagctcttgactgggccaaag 354 |||||||||| ||||| |||||||||||||||||||||||||| || |||||||| || | Sbjct: 334 cgctcctcgggccctcctccgccactttggagaagatgggagcactagactgggcgaagg 393 Query: 355 ttgttcatcaacaccaatggtggcgcctattcagttgtgtctggctccatgctggcctaa 414 |||||||||| |||||| ||||| || | || ||| ||||||| ||||||||||||| Sbjct: 394 ttgttcatcagcaccaagcatggcgtctcattagctgtatctggctacatgctggcctaa 453 Query: 415 ttcacttgattgtcaacatgatgagcttgctattcataggaatccgccttgaacaacaat 474 | ||| |||||||||||||| | |||||||||||||| ||| |||| ||||| || |||| Sbjct: 454 tccacctgattgtcaacatgctaagcttgctattcatcggactccgtcttgagcagcaat 513 Query: 475 ttggctttgtccgcattgggatcatctacctgctatctggctttggtggaagtgttttgt 534 |||| ||||| || ||||| ||||||||| |||||||||||||||| || || || ||| Sbjct: 514 ttgggtttgtgcgtattggaatcatctacttgctatctggctttggcggtagcgtgctgt 573 Query: 535 ctgcactgttcttacgtaatcactacatctctgttggtgcc 575 ||| ||||| ||||||||| |||||||||| ||||||||| Sbjct: 574 ctgtgctgtttttacgtaataactacatctccgttggtgcc 614 Score = 54.0 bits (27), Expect = 5e-04 Identities = 49/54 (90%), Gaps = 3/54 (5%) Strand = Plus / Plus Query: 30 atggcgagcggcagcggcgaggggaaggcgggccgggccggcgcggggtaccag 83 ||||||||| |||||||||||||||||| | ||||| |||||||||||||||| Sbjct: 78 atggcgagcagcagcggcgaggggaagg-gtgccgg--cggcgcggggtaccag 128
>dbj|AK071290.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087M04, full insert sequence Length = 1263 Score = 343 bits (173), Expect = 4e-91 Identities = 376/445 (84%), Gaps = 9/445 (2%) Strand = Plus / Plus Query: 127 agtggtggccgtggctcgtgcccaccgtgctcggcgcctgcgtctcggtcttcgccgtcg 186 ||||||||||||||||||||||||||||| | | ||||||| || |||| ||| ||||| Sbjct: 194 agtggtggccgtggctcgtgcccaccgtgattgtcgcctgcatcgcggtgttcatcgtcg 253 Query: 187 agatgtacctcaacgactgcccccgccacgggagcaccctcggcggcgacgcgccctgcg 246 |||||||| ||||| |||||||| ||||| ||| | ||||||||| |||| Sbjct: 254 agatgtacgtcaacaactgccccaagcacggcagcgcgctcggcggc---------tgcg 304 Query: 247 tcgccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcc 306 ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 305 tcgccggcttcctccgccgcttctccttccagccgctccgcgagaacccgctcctcggcc 364 Query: 307 cctcttccgccactttggagaagatgggagctcttgactgggccaaagttgttcatcaac 366 | ||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| | Sbjct: 365 cgtcttccgccactttgcagaaaatgggagctcttgactggaacaaagttgttcatcagc 424 Query: 367 accaatggtggcgcctattcagttgtgtctggctccatgctggcctaattcacttgattg 426 ||||| | ||||| || | || ||| |||||||||||||||||||||| || ||| ||| Sbjct: 425 accaaggatggcgtctcattagctgtatctggctccatgctggcctaatccatttggttg 484 Query: 427 tcaacatgatgagcttgctattcataggaatccgccttgaacaacaatttggctttgtcc 486 | |||||| |||| || || || || ||||||||||||||||| |||||||| || || | Sbjct: 485 tgaacatgctgagtttactgtttattggaatccgccttgaacagcaatttgggttcgttc 544 Query: 487 gcattgggatcatctacctgctatctggctttggtggaagtgttttgtctgcactgttct 546 ||||||| ||| |||||||||||||| ||||| || ||||| |||||||| || ||| Sbjct: 545 gcattggtgccatatacctgctatctggttttggcgggagtgtgttgtctgcgcttttcc 604 Query: 547 tacgtaatcactacatctctgttgg 571 | |||||| |||||||||||||||| Sbjct: 605 ttcgtaataactacatctctgttgg 629
>dbj|AK059988.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H11, full insert sequence Length = 1266 Score = 343 bits (173), Expect = 4e-91 Identities = 376/445 (84%), Gaps = 9/445 (2%) Strand = Plus / Plus Query: 127 agtggtggccgtggctcgtgcccaccgtgctcggcgcctgcgtctcggtcttcgccgtcg 186 ||||||||||||||||||||||||||||| | | ||||||| || |||| ||| ||||| Sbjct: 176 agtggtggccgtggctcgtgcccaccgtgattgtcgcctgcatcgcggtgttcatcgtcg 235 Query: 187 agatgtacctcaacgactgcccccgccacgggagcaccctcggcggcgacgcgccctgcg 246 |||||||| ||||| |||||||| ||||| ||| | ||||||||| |||| Sbjct: 236 agatgtacgtcaacaactgccccaagcacggcagcgcgctcggcggc---------tgcg 286 Query: 247 tcgccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcc 306 ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 287 tcgccggcttcctccgccgcttctccttccagccgctccgcgagaacccgctcctcggcc 346 Query: 307 cctcttccgccactttggagaagatgggagctcttgactgggccaaagttgttcatcaac 366 | ||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| | Sbjct: 347 cgtcttccgccactttgcagaaaatgggagctcttgactggaacaaagttgttcatcagc 406 Query: 367 accaatggtggcgcctattcagttgtgtctggctccatgctggcctaattcacttgattg 426 ||||| | ||||| || | || ||| |||||||||||||||||||||| || ||| ||| Sbjct: 407 accaaggatggcgtctcattagctgtatctggctccatgctggcctaatccatttggttg 466 Query: 427 tcaacatgatgagcttgctattcataggaatccgccttgaacaacaatttggctttgtcc 486 | |||||| |||| || || || || ||||||||||||||||| |||||||| || || | Sbjct: 467 tgaacatgctgagtttactgtttattggaatccgccttgaacagcaatttgggttcgttc 526 Query: 487 gcattgggatcatctacctgctatctggctttggtggaagtgttttgtctgcactgttct 546 ||||||| ||| |||||||||||||| ||||| || ||||| |||||||| || ||| Sbjct: 527 gcattggtgccatatacctgctatctggttttggcgggagtgtgttgtctgcgcttttcc 586 Query: 547 tacgtaatcactacatctctgttgg 571 | |||||| |||||||||||||||| Sbjct: 587 ttcgtaataactacatctctgttgg 611
>gb|L13655.1|SCFMEMPRO Saccharum hybrid cultivar H65-7052 membrane protein mRNA, complete cds Length = 1279 Score = 301 bits (152), Expect = 1e-78 Identities = 373/448 (83%), Gaps = 9/448 (2%) Strand = Plus / Plus Query: 127 agtggtggccgtggctcgtgcccaccgtgctcggcgcctgcgtctcggtcttcgccgtcg 186 ||||||||||||||||||||||||||||| ||| ||||||| || | || |||| ||||| Sbjct: 226 agtggtggccgtggctcgtgcccaccgtgatcgtcgcctgcatcgccgtgttcgtcgtcg 285 Query: 187 agatgtacctcaacgactgcccccgccacgggagcaccctcggcggcgacgcgccctgcg 246 |||||||| ||| |||||||| ||||||||| ||||||||| |||| Sbjct: 286 agatgtacgagaacaactgccccaagcacgggagccagctcggcggc---------tgcg 336 Query: 247 tcgccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcc 306 ||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| | Sbjct: 337 tcgccgggttcctccgccggttctccttccagccgctccgcgagaacccgctgctcgggc 396 Query: 307 cctcttccgccactttggagaagatgggagctcttgactgggccaaagttgttcatcaac 366 | || ||| ||||||||||||| |||||||||||||||||| ||| ||||||||||| Sbjct: 397 cgtcatcctccactttggagaaaatgggagctcttgactggaataaaattgttcatcaag 456 Query: 367 accaatggtggcgcctattcagttgtgtctggctccatgctggcctaattcacttgattg 426 ||||| |||||||||| | || || |||||||||||||||||||||| || ||| | | Sbjct: 457 accaagggtggcgccttattagctgcatctggctccatgctggcctaatccatttggtcg 516 Query: 427 tcaacatgatgagcttgctattcataggaatccgccttgaacaacaatttggctttgtcc 486 | |||||| | || ||||| || || |||||||||||||| || |||||||| ||||||| Sbjct: 517 tgaacatgctaagtttgctgtttattggaatccgccttgagcagcaatttggatttgtcc 576 Query: 487 gcattgggatcatctacctgctatctggctttggtggaagtgttttgtctgcactgttct 546 ||||||| ||| ||||| || ||||| |||||||| || || ||||||||||| ||| Sbjct: 577 gcattggtgccatatacctactgtctggttttggtggcagcgtgttgtctgcactcttcc 636 Query: 547 tacgtaatcactacatctctgttggtgc 574 |||| || ||||||||||||||||||| Sbjct: 637 tacggaacaactacatctctgttggtgc 664
>gb|AY105455.1| Zea mays PCO077618 mRNA sequence Length = 1387 Score = 248 bits (125), Expect = 2e-62 Identities = 281/333 (84%) Strand = Plus / Plus Query: 242 ctgcgtcgccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcct 301 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 386 ctgcgtcgccggcttcctccgccgcttctccttccagccgctccgcgagaacccgctgct 445 Query: 302 cggcccctcttccgccactttggagaagatgggagctcttgactgggccaaagttgttca 361 |||||| || ||| ||||||||||||| |||||||||||||||||| ||| |||| || Sbjct: 446 cggcccgtcctcctccactttggagaaaatgggagctcttgactggaataaaattgtcca 505 Query: 362 tcaacaccaatggtggcgcctattcagttgtgtctggctccatgctggcctaattcactt 421 |||| ||||| |||||||||| | || || |||||||||||||||||||||| || || Sbjct: 506 tcaaaaccaagggtggcgccttattagctgcatctggctccatgctggcctaatccattt 565 Query: 422 gattgtcaacatgatgagcttgctattcataggaatccgccttgaacaacaatttggctt 481 | |||| |||||| | || ||||| || || |||||||||||||| || |||||||| || Sbjct: 566 ggttgtgaacatgctaagtttgctgtttattggaatccgccttgagcagcaatttggatt 625 Query: 482 tgtccgcattgggatcatctacctgctatctggctttggtggaagtgttttgtctgcact 541 ||| |||||||| ||| ||||| || ||||| |||||||| || || ||||||||||| Sbjct: 626 tgttcgcattggtgccatatacctactgtctggttttggtggcagcgtgttgtctgcact 685 Query: 542 gttcttacgtaatcactacatctctgttggtgc 574 ||| |||| || ||||||||| |||||||| Sbjct: 686 cttcctacggaacagctacatctccgttggtgc 718 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 127 agtggtggccgtggctcgtgcccaccgtgctcggcgcctgcgtctcggtcttcgccgtcg 186 |||||||||||||||||||||||||||| ||| ||||||| || | || |||| ||||| Sbjct: 280 agtggtggccgtggctcgtgcccaccgtcatcgtcgcctgcatcgccgtgttcgtcgtcg 339 Query: 187 agatgtac 194 |||||||| Sbjct: 340 agatgtac 347
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 188 bits (95), Expect = 1e-44 Identities = 178/205 (86%), Gaps = 3/205 (1%) Strand = Plus / Minus Query: 115 acgacgagcgccagtggtggccgtggctcgtgcccaccgtgctcggcgcctgcgtctcgg 174 |||| ||||| | ||||||||||||||||||||| |||||||||| |||||| || || Sbjct: 27371541 acgaggagcggcggtggtggccgtggctcgtgccgaccgtgctcgtggcctgcatcgtgg 27371482 Query: 175 tcttcgccgtcgagatgtacctcaacgactgcccccgccacgggagcaccctcggcggcg 234 | ||| ||||||||||| | |||||||||||||||||||||||||| | ||| |||||| Sbjct: 27371481 tgttcctcgtcgagatgttcgtcaacgactgcccccgccacgggagcccgctccgcggcg 27371422 Query: 235 acgcgccctgcgtcgccggtttcctccgccagttctccttccagccgctccgcgagaacc 294 | | ||||||||||||| ||||||| ||||||| |||||||||||||||| ||||||| Sbjct: 27371421 a---gtcctgcgtcgccggcttcctccaccagttcgccttccagccgctccgggagaacc 27371365 Query: 295 cgctcctcggcccctcttccgccac 319 |||||||||| ||||| |||||||| Sbjct: 27371364 cgctcctcgggccctcctccgccac 27371340 Score = 129 bits (65), Expect = 1e-26 Identities = 143/169 (84%) Strand = Plus / Minus Query: 315 gccactttggagaagatgggagctcttgactgggccaaagttgttcatcaacaccaatgg 374 |||| |||||||||||||||||| || |||||||| || ||||||||||| |||||| Sbjct: 27370554 gccagtttggagaagatgggagcactagactgggcgaaggttgttcatcagcaccaagca 27370495 Query: 375 tggcgcctattcagttgtgtctggctccatgctggcctaattcacttgattgtcaacatg 434 ||||| || | || ||| ||||||| |||||||||||||| ||| |||||||||||||| Sbjct: 27370494 tggcgtctcattagctgtatctggctacatgctggcctaatccacctgattgtcaacatg 27370435 Query: 435 atgagcttgctattcataggaatccgccttgaacaacaatttggctttg 483 | |||||||||||||| ||| |||| ||||| || |||||||| |||| Sbjct: 27370434 ctaagcttgctattcatcggactccgtcttgagcagcaatttgggtttg 27370386 Score = 77.8 bits (39), Expect = 4e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 489 attgggatcatctacctgctatctggctttggtggaagtgttttgtctgcactgttctta 548 ||||| ||||||||| |||||||||||||||| || || || |||||| ||||| ||| Sbjct: 27369895 attggaatcatctacttgctatctggctttggcggtagcgtgctgtctgtgctgttttta 27369836 Query: 549 cgtaatcactacatctctgttggtgcc 575 |||||| |||||||||| ||||||||| Sbjct: 27369835 cgtaataactacatctccgttggtgcc 27369809 Score = 54.0 bits (27), Expect = 5e-04 Identities = 49/54 (90%), Gaps = 3/54 (5%) Strand = Plus / Minus Query: 30 atggcgagcggcagcggcgaggggaaggcgggccgggccggcgcggggtaccag 83 ||||||||| |||||||||||||||||| | ||||| |||||||||||||||| Sbjct: 27371620 atggcgagcagcagcggcgaggggaagg-gtgccgg--cggcgcggggtaccag 27371570 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ggcgagcggcagcggcgagg 51 |||||||||||||||||||| Sbjct: 10531758 ggcgagcggcagcggcgagg 10531777
>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1323_A06 Length = 95665 Score = 188 bits (95), Expect = 1e-44 Identities = 178/205 (86%), Gaps = 3/205 (1%) Strand = Plus / Minus Query: 115 acgacgagcgccagtggtggccgtggctcgtgcccaccgtgctcggcgcctgcgtctcgg 174 |||| ||||| | ||||||||||||||||||||| |||||||||| |||||| || || Sbjct: 73068 acgaggagcggcggtggtggccgtggctcgtgccgaccgtgctcgtggcctgcatcgtgg 73009 Query: 175 tcttcgccgtcgagatgtacctcaacgactgcccccgccacgggagcaccctcggcggcg 234 | ||| ||||||||||| | |||||||||||||||||||||||||| | ||| |||||| Sbjct: 73008 tgttcctcgtcgagatgttcgtcaacgactgcccccgccacgggagcccgctccgcggcg 72949 Query: 235 acgcgccctgcgtcgccggtttcctccgccagttctccttccagccgctccgcgagaacc 294 | | ||||||||||||| ||||||| ||||||| |||||||||||||||| ||||||| Sbjct: 72948 a---gtcctgcgtcgccggcttcctccaccagttcgccttccagccgctccgggagaacc 72892 Query: 295 cgctcctcggcccctcttccgccac 319 |||||||||| ||||| |||||||| Sbjct: 72891 cgctcctcgggccctcctccgccac 72867 Score = 129 bits (65), Expect = 1e-26 Identities = 143/169 (84%) Strand = Plus / Minus Query: 315 gccactttggagaagatgggagctcttgactgggccaaagttgttcatcaacaccaatgg 374 |||| |||||||||||||||||| || |||||||| || ||||||||||| |||||| Sbjct: 72081 gccagtttggagaagatgggagcactagactgggcgaaggttgttcatcagcaccaagca 72022 Query: 375 tggcgcctattcagttgtgtctggctccatgctggcctaattcacttgattgtcaacatg 434 ||||| || | || ||| ||||||| |||||||||||||| ||| |||||||||||||| Sbjct: 72021 tggcgtctcattagctgtatctggctacatgctggcctaatccacctgattgtcaacatg 71962 Query: 435 atgagcttgctattcataggaatccgccttgaacaacaatttggctttg 483 | |||||||||||||| ||| |||| ||||| || |||||||| |||| Sbjct: 71961 ctaagcttgctattcatcggactccgtcttgagcagcaatttgggtttg 71913 Score = 77.8 bits (39), Expect = 4e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 489 attgggatcatctacctgctatctggctttggtggaagtgttttgtctgcactgttctta 548 ||||| ||||||||| |||||||||||||||| || || || |||||| ||||| ||| Sbjct: 71422 attggaatcatctacttgctatctggctttggcggtagcgtgctgtctgtgctgttttta 71363 Query: 549 cgtaatcactacatctctgttggtgcc 575 |||||| |||||||||| ||||||||| Sbjct: 71362 cgtaataactacatctccgttggtgcc 71336 Score = 54.0 bits (27), Expect = 5e-04 Identities = 49/54 (90%), Gaps = 3/54 (5%) Strand = Plus / Minus Query: 30 atggcgagcggcagcggcgaggggaaggcgggccgggccggcgcggggtaccag 83 ||||||||| |||||||||||||||||| | ||||| |||||||||||||||| Sbjct: 73147 atggcgagcagcagcggcgaggggaagg-gtgccgg--cggcgcggggtaccag 73097
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 161 bits (81), Expect = 3e-36 Identities = 164/193 (84%), Gaps = 9/193 (4%) Strand = Plus / Minus Query: 127 agtggtggccgtggctcgtgcccaccgtgctcggcgcctgcgtctcggtcttcgccgtcg 186 ||||||||||||||||||||||||||||| | | ||||||| || |||| ||| ||||| Sbjct: 20251458 agtggtggccgtggctcgtgcccaccgtgattgtcgcctgcatcgcggtgttcatcgtcg 20251399 Query: 187 agatgtacctcaacgactgcccccgccacgggagcaccctcggcggcgacgcgccctgcg 246 |||||||| ||||| |||||||| ||||| ||| | ||||||||| |||| Sbjct: 20251398 agatgtacgtcaacaactgccccaagcacggcagcgcgctcggcggc---------tgcg 20251348 Query: 247 tcgccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcc 306 ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 20251347 tcgccggcttcctccgccgcttctccttccagccgctccgcgagaacccgctcctcggcc 20251288 Query: 307 cctcttccgccac 319 | ||||||||||| Sbjct: 20251287 cgtcttccgccac 20251275 Score = 125 bits (63), Expect = 2e-25 Identities = 135/159 (84%) Strand = Plus / Minus Query: 320 tttggagaagatgggagctcttgactgggccaaagttgttcatcaacaccaatggtggcg 379 |||| |||| |||||||||||||||||| ||||||||||||||| |||||| | ||||| Sbjct: 20250079 tttgcagaaaatgggagctcttgactggaacaaagttgttcatcagcaccaaggatggcg 20250020 Query: 380 cctattcagttgtgtctggctccatgctggcctaattcacttgattgtcaacatgatgag 439 || | || ||| |||||||||||||||||||||| || ||| |||| |||||| |||| Sbjct: 20250019 tctcattagctgtatctggctccatgctggcctaatccatttggttgtgaacatgctgag 20249960 Query: 440 cttgctattcataggaatccgccttgaacaacaatttgg 478 || || || || ||||||||||||||||| |||||||| Sbjct: 20249959 tttactgtttattggaatccgccttgaacagcaatttgg 20249921 Score = 69.9 bits (35), Expect = 9e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 501 tacctgctatctggctttggtggaagtgttttgtctgcactgttcttacgtaatcactac 560 |||||||||||||| ||||| || ||||| |||||||| || ||| | |||||| ||||| Sbjct: 20249463 tacctgctatctggttttggcgggagtgtgttgtctgcgcttttccttcgtaataactac 20249404 Query: 561 atctctgttgg 571 ||||||||||| Sbjct: 20249403 atctctgttgg 20249393
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 161 bits (81), Expect = 3e-36 Identities = 164/193 (84%), Gaps = 9/193 (4%) Strand = Plus / Minus Query: 127 agtggtggccgtggctcgtgcccaccgtgctcggcgcctgcgtctcggtcttcgccgtcg 186 ||||||||||||||||||||||||||||| | | ||||||| || |||| ||| ||||| Sbjct: 30585 agtggtggccgtggctcgtgcccaccgtgattgtcgcctgcatcgcggtgttcatcgtcg 30526 Query: 187 agatgtacctcaacgactgcccccgccacgggagcaccctcggcggcgacgcgccctgcg 246 |||||||| ||||| |||||||| ||||| ||| | ||||||||| |||| Sbjct: 30525 agatgtacgtcaacaactgccccaagcacggcagcgcgctcggcggc---------tgcg 30475 Query: 247 tcgccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcc 306 ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 30474 tcgccggcttcctccgccgcttctccttccagccgctccgcgagaacccgctcctcggcc 30415 Query: 307 cctcttccgccac 319 | ||||||||||| Sbjct: 30414 cgtcttccgccac 30402 Score = 125 bits (63), Expect = 2e-25 Identities = 135/159 (84%) Strand = Plus / Minus Query: 320 tttggagaagatgggagctcttgactgggccaaagttgttcatcaacaccaatggtggcg 379 |||| |||| |||||||||||||||||| ||||||||||||||| |||||| | ||||| Sbjct: 29206 tttgcagaaaatgggagctcttgactggaacaaagttgttcatcagcaccaaggatggcg 29147 Query: 380 cctattcagttgtgtctggctccatgctggcctaattcacttgattgtcaacatgatgag 439 || | || ||| |||||||||||||||||||||| || ||| |||| |||||| |||| Sbjct: 29146 tctcattagctgtatctggctccatgctggcctaatccatttggttgtgaacatgctgag 29087 Query: 440 cttgctattcataggaatccgccttgaacaacaatttgg 478 || || || || ||||||||||||||||| |||||||| Sbjct: 29086 tttactgtttattggaatccgccttgaacagcaatttgg 29048 Score = 69.9 bits (35), Expect = 9e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 501 tacctgctatctggctttggtggaagtgttttgtctgcactgttcttacgtaatcactac 560 |||||||||||||| ||||| || ||||| |||||||| || ||| | |||||| ||||| Sbjct: 28590 tacctgctatctggttttggcgggagtgtgttgtctgcgcttttccttcgtaataactac 28531 Query: 561 atctctgttgg 571 ||||||||||| Sbjct: 28530 atctctgttgg 28520
>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0047P18 Length = 169128 Score = 161 bits (81), Expect = 3e-36 Identities = 164/193 (84%), Gaps = 9/193 (4%) Strand = Plus / Minus Query: 127 agtggtggccgtggctcgtgcccaccgtgctcggcgcctgcgtctcggtcttcgccgtcg 186 ||||||||||||||||||||||||||||| | | ||||||| || |||| ||| ||||| Sbjct: 144958 agtggtggccgtggctcgtgcccaccgtgattgtcgcctgcatcgcggtgttcatcgtcg 144899 Query: 187 agatgtacctcaacgactgcccccgccacgggagcaccctcggcggcgacgcgccctgcg 246 |||||||| ||||| |||||||| ||||| ||| | ||||||||| |||| Sbjct: 144898 agatgtacgtcaacaactgccccaagcacggcagcgcgctcggcggc---------tgcg 144848 Query: 247 tcgccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcc 306 ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 144847 tcgccggcttcctccgccgcttctccttccagccgctccgcgagaacccgctcctcggcc 144788 Query: 307 cctcttccgccac 319 | ||||||||||| Sbjct: 144787 cgtcttccgccac 144775 Score = 125 bits (63), Expect = 2e-25 Identities = 135/159 (84%) Strand = Plus / Minus Query: 320 tttggagaagatgggagctcttgactgggccaaagttgttcatcaacaccaatggtggcg 379 |||| |||| |||||||||||||||||| ||||||||||||||| |||||| | ||||| Sbjct: 143579 tttgcagaaaatgggagctcttgactggaacaaagttgttcatcagcaccaaggatggcg 143520 Query: 380 cctattcagttgtgtctggctccatgctggcctaattcacttgattgtcaacatgatgag 439 || | || ||| |||||||||||||||||||||| || ||| |||| |||||| |||| Sbjct: 143519 tctcattagctgtatctggctccatgctggcctaatccatttggttgtgaacatgctgag 143460 Query: 440 cttgctattcataggaatccgccttgaacaacaatttgg 478 || || || || ||||||||||||||||| |||||||| Sbjct: 143459 tttactgtttattggaatccgccttgaacagcaatttgg 143421 Score = 69.9 bits (35), Expect = 9e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 501 tacctgctatctggctttggtggaagtgttttgtctgcactgttcttacgtaatcactac 560 |||||||||||||| ||||| || ||||| |||||||| || ||| | |||||| ||||| Sbjct: 142963 tacctgctatctggttttggcgggagtgtgttgtctgcgcttttccttcgtaataactac 142904 Query: 561 atctctgttgg 571 ||||||||||| Sbjct: 142903 atctctgttgg 142893
>dbj|AK061038.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-C01, full insert sequence Length = 1241 Score = 119 bits (60), Expect = 1e-23 Identities = 105/120 (87%) Strand = Plus / Plus Query: 243 tgcgtcgccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcctc 302 ||||||||||| |||||||||| |||||||||||||| ||| |||||||||||||||| Sbjct: 335 tgcgtcgccggattcctccgccgcttctccttccagcctctctccgagaacccgctcctc 394 Query: 303 ggcccctcttccgccactttggagaagatgggagctcttgactgggccaaagttgttcat 362 |||||||| |||||||| ||| ||||||||||||| || | |||| ||| ||||||||| Sbjct: 395 ggcccctcctccgccacattgcagaagatgggagcactggtatgggacaaggttgttcat 454
>gb|AY596621.1| Saccharum officinarum clone SCJFRZ1007E03, complete sequence Length = 1068 Score = 87.7 bits (44), Expect = 4e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 267 ttctccttccagccgctccgcgagaacccgctcctcggcccctcttccgccactttggag 326 |||||||||||||||||| ||||||||||||||||||||||||| || ||||| || || Sbjct: 712 ttctccttccagccgctcagcgagaacccgctcctcggcccctcgtcggccacgctgcag 653 Query: 327 aagatgggagctcttgactgggccaaagttgt 358 ||| |||| || |||| |||| ||||||||| Sbjct: 652 aagctgggggcacttgtatgggacaaagttgt 621
>dbj|AK102725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105L05, full insert sequence Length = 1284 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 267 ttctccttccagccgctccgcgagaacccgctcctcggcccctcttccgccactttggag 326 |||||||||||||| |||| |||||||||||||||||||||||| |||||||| | || Sbjct: 333 ttctccttccagcctctccacgagaacccgctcctcggcccctcctccgccacgctacag 392 Query: 327 aagatgggagctcttg 342 ||||||||||| |||| Sbjct: 393 aagatgggagcacttg 408
>dbj|AK061443.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C10, full insert sequence Length = 1366 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 267 ttctccttccagccgctccgcgagaacccgctcctcggcccctcttccgccactttggag 326 |||||||||||||| |||| |||||||||||||||||||||||| |||||||| | || Sbjct: 333 ttctccttccagcctctccacgagaacccgctcctcggcccctcctccgccacgctacag 392 Query: 327 aagatgggagctcttg 342 ||||||||||| |||| Sbjct: 393 aagatgggagcacttg 408
>ref|NM_197406.1| Oryza sativa (japonica cultivar-group) putative membrane protein (OSJNBb0028C01.27), mRNA Length = 1180 Score = 83.8 bits (42), Expect = 6e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 250 ccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcccct 309 |||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||||| Sbjct: 234 ccggattcctccgccgcttctccttccagcctctctccgagaacccgctcctcggcccct 293 Query: 310 cttccgccac 319 | |||||||| Sbjct: 294 cctccgccac 303
>gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 genomic sequence, complete sequence Length = 137366 Score = 83.8 bits (42), Expect = 6e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 250 ccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcccct 309 |||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||||| Sbjct: 89001 ccggattcctccgccgcttctccttccagcctctctccgagaacccgctcctcggcccct 88942 Query: 310 cttccgccac 319 | |||||||| Sbjct: 88941 cctccgccac 88932
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 83.8 bits (42), Expect = 6e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 250 ccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcccct 309 |||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||||| Sbjct: 19688511 ccggattcctccgccgcttctccttccagcctctctccgagaacccgctcctcggcccct 19688570 Query: 310 cttccgccac 319 | |||||||| Sbjct: 19688571 cctccgccac 19688580
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 83.8 bits (42), Expect = 6e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 250 ccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcccct 309 |||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||||| Sbjct: 19699787 ccggattcctccgccgcttctccttccagcctctctccgagaacccgctcctcggcccct 19699846 Query: 310 cttccgccac 319 | |||||||| Sbjct: 19699847 cctccgccac 19699856
>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13, complete sequence Length = 148011 Score = 81.8 bits (41), Expect = 2e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 267 ttctccttccagccgctccgcgagaacccgctcctcggcccctcttccgccac 319 |||||||||||||| |||| |||||||||||||||||||||||| |||||||| Sbjct: 67455 ttctccttccagcctctccacgagaacccgctcctcggcccctcctccgccac 67507
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 81.8 bits (41), Expect = 2e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 267 ttctccttccagccgctccgcgagaacccgctcctcggcccctcttccgccac 319 |||||||||||||| |||| |||||||||||||||||||||||| |||||||| Sbjct: 912258 ttctccttccagcctctccacgagaacccgctcctcggcccctcctccgccac 912310
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 81.8 bits (41), Expect = 2e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 267 ttctccttccagccgctccgcgagaacccgctcctcggcccctcttccgccac 319 |||||||||||||| |||| |||||||||||||||||||||||| |||||||| Sbjct: 912256 ttctccttccagcctctccacgagaacccgctcctcggcccctcctccgccac 912308
>gb|AY104667.1| Zea mays PCO082199 mRNA sequence Length = 666 Score = 79.8 bits (40), Expect = 9e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 267 ttctccttccagccgctccgcgagaacccgctcctcggcccctcttccgccactttggag 326 ||||| |||||||||||| ||||||||||||||||||| ||||| || ||||| || || Sbjct: 26 ttctcgttccagccgctcagcgagaacccgctcctcgggccctcgtcggccacgctgcag 85 Query: 327 aagatgggagctcttgactgggccaaagttgt 358 ||| ||||||| |||| |||| ||||||||| Sbjct: 86 aagctgggagcgcttgtatgggacaaagttgt 117
>gb|AY108746.1| Zea mays PCO105743 mRNA sequence Length = 1355 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 243 tgcgtcgccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcctc 302 ||||||||| | |||||| ||| ||||||||||||||||| || ||||||||||| || Sbjct: 313 tgcgtcgcccgcttcctcggccgcttctccttccagccgctgcgacagaacccgctcttc 372 Query: 303 ggcccctcttccgccac 319 || ||||| |||||||| Sbjct: 373 gggccctcctccgccac 389
>dbj|AK109134.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-E01, full insert sequence Length = 1422 Score = 61.9 bits (31), Expect = 2e-06 Identities = 82/99 (82%) Strand = Plus / Plus Query: 242 ctgcgtcgccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcct 301 ||||| |||||| |||||| ||| ||| |||||||||||||| ||||| || ||||| Sbjct: 320 ctgcgccgccggcttcctcggccgcttcgccttccagccgctcaaggagaatcccctcct 379 Query: 302 cggcccctcttccgccactttggagaagatgggagctct 340 |||||| || |||||||| || ||||||||||||||| Sbjct: 380 cggcccttcctccgccacgttactgaagatgggagctct 418
>ref|XM_473547.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1029 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 255 ttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcccctcttcc 314 |||||||| | | ||||||||||||||||| | |||||||| ||||||||||||| || Sbjct: 286 ttcctccgacggctctccttccagccgctcagggagaaccccgtcctcggcccctcggcc 345 Query: 315 gccac 319 ||||| Sbjct: 346 gccac 350
>emb|AL663003.2|OSJN00203 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032E06, complete sequence Length = 125196 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 255 ttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcccctcttcc 314 |||||||| | | ||||||||||||||||| | |||||||| ||||||||||||| || Sbjct: 107804 ttcctccgacggctctccttccagccgctcagggagaaccccgtcctcggcccctcggcc 107863 Query: 315 gccac 319 ||||| Sbjct: 107864 gccac 107868
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 255 ttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcccctcttcc 314 |||||||| | | ||||||||||||||||| | |||||||| ||||||||||||| || Sbjct: 28617014 ttcctccgacggctctccttccagccgctcagggagaaccccgtcctcggcccctcggcc 28617073 Query: 315 gccac 319 ||||| Sbjct: 28617074 gccac 28617078 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 gagctatggcgagcggcagcgg 46 |||||||||||||||||||||| Sbjct: 21066590 gagctatggcgagcggcagcgg 21066569
>dbj|AK058648.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-E11, full insert sequence Length = 1341 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 255 ttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcccctcttcc 314 |||||||| | | ||||||||||||||||| | |||||||| ||||||||||||| || Sbjct: 398 ttcctccgacggctctccttccagccgctcagggagaaccccgtcctcggcccctcggcc 457 Query: 315 gccac 319 ||||| Sbjct: 458 gccac 462
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 242 ctgcgtcgccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcct 301 ||||| |||||| |||||| ||| ||| |||||||||||||| ||||| || ||||| Sbjct: 31050 ctgcgccgccggcttcctcggccgcttcgccttccagccgctcaaggagaatcccctcct 30991 Query: 302 cggcccctcttccgccac 319 |||||| || |||||||| Sbjct: 30990 cggcccttcctccgccac 30973
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 242 ctgcgtcgccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcct 301 ||||| |||||| |||||| ||| ||| |||||||||||||| ||||| || ||||| Sbjct: 28225950 ctgcgccgccggcttcctcggccgcttcgccttccagccgctcaaggagaatcccctcct 28225891 Query: 302 cggcccctcttccgccac 319 |||||| || |||||||| Sbjct: 28225890 cggcccttcctccgccac 28225873 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 tggcgagcggcagcggcgag 50 |||||||||||||||||||| Sbjct: 14058393 tggcgagcggcagcggcgag 14058412 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 atggcgagcggcagcggcga 49 |||||||||||||||||||| Sbjct: 7465430 atggcgagcggcagcggcga 7465449
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 242 ctgcgtcgccggtttcctccgccagttctccttccagccgctccgcgagaacccgctcct 301 ||||| |||||| |||||| ||| ||| |||||||||||||| ||||| || ||||| Sbjct: 28210827 ctgcgccgccggcttcctcggccgcttcgccttccagccgctcaaggagaatcccctcct 28210768 Query: 302 cggcccctcttccgccac 319 |||||| || |||||||| Sbjct: 28210767 cggcccttcctccgccac 28210750 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 tggcgagcggcagcggcgag 50 |||||||||||||||||||| Sbjct: 14140395 tggcgagcggcagcggcgag 14140414 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 atggcgagcggcagcggcga 49 |||||||||||||||||||| Sbjct: 7535516 atggcgagcggcagcggcga 7535535
>dbj|AK099082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002M21, full insert sequence Length = 1275 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 255 ttcctccgccagttctccttccagccgctccgcgagaacccgctcctcggcccctcttcc 314 |||||||| | | ||||||||||||| ||| | |||||||| ||||||||||||| || Sbjct: 368 ttcctccgacggctctccttccagccactcagggagaaccccgtcctcggcccctcggcc 427 Query: 315 gccac 319 ||||| Sbjct: 428 gccac 432
>gb|AY658499.1| Synthetic construct Peudomonas aeruginosa clone FLH052291.01F PA0174 gene, partial cds Length = 603 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 149 caccgtgctcggcgcctgcgtctcggt 175 ||||||||||||| ||||||||||||| Sbjct: 123 caccgtgctcggctcctgcgtctcggt 149
>gb|AE004455.1| Pseudomonas aeruginosa PAO1, section 16 of 529 of the complete genome Length = 10882 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 149 caccgtgctcggcgcctgcgtctcggt 175 ||||||||||||| ||||||||||||| Sbjct: 4855 caccgtgctcggctcctgcgtctcggt 4829
>ref|XM_472484.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 720 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 gagctatggcgagcggcagcgg 46 |||||||||||||||||||||| Sbjct: 398 gagctatggcgagcggcagcgg 419
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 92 ctcgtacggcaccggcaccggc 113 |||||||||||||||||||||| Sbjct: 89649 ctcgtacggcaccggcaccggc 89670
>gb|AC171275.2| Gallus gallus BAC clone CH261-87A5 from chromosome ul, complete sequence Length = 206820 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 56 ggcgggccgggccggcgcgggg 77 |||||||||||||||||||||| Sbjct: 105787 ggcgggccgggccggcgcgggg 105766
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 92 ctcgtacggcaccggcaccggc 113 |||||||||||||||||||||| Sbjct: 3268517 ctcgtacggcaccggcaccggc 3268496
>emb|AL731590.4|OSJN00233 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035I04, complete sequence Length = 140890 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 gagctatggcgagcggcagcgg 46 |||||||||||||||||||||| Sbjct: 112434 gagctatggcgagcggcagcgg 112413
>emb|AL607002.3|OSJN00117 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085H03, complete sequence Length = 132393 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 gagctatggcgagcggcagcgg 46 |||||||||||||||||||||| Sbjct: 3976 gagctatggcgagcggcagcgg 3955
>ref|NM_104990.3| Arabidopsis thaliana unknown protein AT1G63120 mRNA, complete cds Length = 1222 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 429 aacatgatgagcttgctattcataggaatccgccttgaacaacaatttggctt 481 |||||| |||| ||| | ||||| || ||||||||||| || ||||||||||| Sbjct: 475 aacatgttgagtttgatcttcattggtatccgccttgagcagcaatttggctt 527
>ref|NM_189629.1| Oryza sativa (japonica cultivar-group), Ozsa8057 predicted mRNA Length = 1716 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cccaccgtgctcggcgcctgc 167 ||||||||||||||||||||| Sbjct: 1510 cccaccgtgctcggcgcctgc 1530
>emb|X98515.1|SPSNBAGEN S.pristinaespiralis snbA gene Length = 1879 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ggcaccggcaccggctacgac 119 ||||||||||||||||||||| Sbjct: 503 ggcaccggcaccggctacgac 523
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 gcaccggcaccggctacgacg 120 ||||||||||||||||||||| Sbjct: 153761 gcaccggcaccggctacgacg 153741
>emb|BX294139.1| Pirellula sp. strain 1 complete genome; segment 7/24 Length = 287650 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 307 cctcttccgccactttggaga 327 ||||||||||||||||||||| Sbjct: 71626 cctcttccgccactttggaga 71646
>gb|AE011864.1| Xanthomonas axonopodis pv. citri str. 306, section 242 of 469 of the complete genome Length = 11981 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 179 cgccgtcgagatgtacctcaa 199 ||||||||||||||||||||| Sbjct: 709 cgccgtcgagatgtacctcaa 689
>dbj|AB195671.1| Arabidopsis thaliana mRNA for Rhomboid family protein AtRBL2, complete cds Length = 954 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 429 aacatgatgagcttgctattcataggaatccgccttgaacaacaatttggctt 481 |||||| |||| ||| | ||||| || ||||||||||| || ||||||||||| Sbjct: 385 aacatgttgagtttgatcttcattggtatccgccttgagcagcaatttggctt 437
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 gcaccggcaccggctacgacg 120 ||||||||||||||||||||| Sbjct: 3286190 gcaccggcaccggctacgacg 3286210
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 gtcgagatgtacctcaacgac 203 ||||||||||||||||||||| Sbjct: 279581 gtcgagatgtacctcaacgac 279561
>ref|XM_396578.2| PREDICTED: Apis mellifera similar to CG10907-PA (LOC413127), mRNA Length = 4290 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 ttcctccgccagttctccttc 275 ||||||||||||||||||||| Sbjct: 3234 ttcctccgccagttctccttc 3214
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cccaccgtgctcggcgcctgc 167 ||||||||||||||||||||| Sbjct: 4646696 cccaccgtgctcggcgcctgc 4646716
>gb|AC010795.5|AC010795 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence Length = 100512 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Minus Query: 429 aacatgatgagcttgctattcataggaatccgccttgaacaacaatttggctt 481 |||||| |||| ||| | ||||| || ||||||||||| || ||||||||||| Sbjct: 61029 aacatgttgagtttgatcttcattggtatccgccttgagcagcaatttggctt 60977
>gb|BT005121.1| Arabidopsis thaliana clone U20736 putative membrane protein (At1g63120) mRNA, complete cds Length = 985 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 429 aacatgatgagcttgctattcataggaatccgccttgaacaacaatttggctt 481 |||||| |||| ||| | ||||| || ||||||||||| || ||||||||||| Sbjct: 385 aacatgttgagtttgatcttcattggtatccgccttgagcagcaatttggctt 437
>gb|BT004076.1| Arabidopsis thaliana clone RAFL15-09-E05 (R20736) putative membrane protein (At1g63120) mRNA, complete cds Length = 1238 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 429 aacatgatgagcttgctattcataggaatccgccttgaacaacaatttggctt 481 |||||| |||| ||| | ||||| || ||||||||||| || ||||||||||| Sbjct: 475 aacatgttgagtttgatcttcattggtatccgccttgagcagcaatttggctt 527
>dbj|AP002836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0512G09 Length = 146921 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cccaccgtgctcggcgcctgc 167 ||||||||||||||||||||| Sbjct: 6941 cccaccgtgctcggcgcctgc 6961
>dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695A04 Length = 158133 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cccaccgtgctcggcgcctgc 167 ||||||||||||||||||||| Sbjct: 53912 cccaccgtgctcggcgcctgc 53932
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 218 gagcaccctcggcggcgacgcgccctgcg 246 ||||||||||||| ||| ||||||||||| Sbjct: 389291 gagcaccctcggccgcgtcgcgccctgcg 389263
>ref|XM_319541.2| Anopheles gambiae str. PEST ENSANGP00000002068 (ENSANGG00000001757), partial mRNA Length = 1857 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 ggggaaggcgggccgggccgg 70 ||||||||||||||||||||| Sbjct: 348 ggggaaggcgggccgggccgg 368
>ref|XM_314204.2| Anopheles gambiae str. PEST ENSANGP00000000923 (ENSANGG00000000808), partial mRNA Length = 2301 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 ggggaaggcgggccgggccgg 70 ||||||||||||||||||||| Sbjct: 468 ggggaaggcgggccgggccgg 488
>dbj|AK106168.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-B09, full insert sequence Length = 1205 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cccaccgtgctcggcgcctgc 167 ||||||||||||||||||||| Sbjct: 945 cccaccgtgctcggcgcctgc 965
>dbj|AK105323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-G12, full insert sequence Length = 1523 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 cccaccgtgctcggcgcctgc 167 ||||||||||||||||||||| Sbjct: 1263 cccaccgtgctcggcgcctgc 1283
>ref|XM_481195.1| Oryza sativa (japonica cultivar-group), mRNA Length = 345 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ggcgagcggcagcggcgagg 51 |||||||||||||||||||| Sbjct: 221 ggcgagcggcagcggcgagg 240
>gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0122P24, complete sequence Length = 136104 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 atggcgagcggcagcggcga 49 |||||||||||||||||||| Sbjct: 5368 atggcgagcggcagcggcga 5349
>gb|AC145367.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence Length = 111122 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 tggcgagcggcagcggcgag 50 |||||||||||||||||||| Sbjct: 46801 tggcgagcggcagcggcgag 46820
>ref|XM_369637.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG05827.4) partial mRNA Length = 1329 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 221 caccctcggcggcgacgcgccctgcgtcgccg 252 ||||||||||| | |||||| ||||||||||| Sbjct: 618 caccctcggcgtctacgcgcgctgcgtcgccg 649
>ref|XM_369664.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG05800.4) partial mRNA Length = 1287 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cgtacggcaccggcaccggc 113 |||||||||||||||||||| Sbjct: 626 cgtacggcaccggcaccggc 645
>gb|AC125166.3| Mus musculus BAC clone RP24-435J4 from chromosome 18, complete sequence Length = 174565 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 cttgattgtcaacatgatga 438 |||||||||||||||||||| Sbjct: 34853 cttgattgtcaacatgatga 34872
>gb|AC092585.2| Homo sapiens BAC clone RP11-20L17 from 7, complete sequence Length = 137446 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 gttcatcaacaccaatggtg 376 |||||||||||||||||||| Sbjct: 35459 gttcatcaacaccaatggtg 35440
>gb|AY217008.1| Sphingomonas elodea strain ATCC 31461 gellan polysaccharide biosynthesis gene cluster, complete sequence Length = 31500 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 tggcgagcggcagcggcgag 50 |||||||||||||||||||| Sbjct: 30030 tggcgagcggcagcggcgag 30011
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 7.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 275 ccagccgctccgcgagaacccgctcctcggcc 306 ||||||||||| |||| |||||||||||||| Sbjct: 706907 ccagccgctcccagagatcccgctcctcggcc 706876
>gb|AC135106.8| Pan troglodytes clone rp43-48a6, complete sequence Length = 181842 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 526 gtgttttgtctgcactgttc 545 |||||||||||||||||||| Sbjct: 119029 gtgttttgtctgcactgttc 119010
>gb|AF332093.1|AF332093 White spot syndrome virus, complete genome Length = 305107 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ccaaagttgttcatcaacac 368 |||||||||||||||||||| Sbjct: 5911 ccaaagttgttcatcaacac 5892
>gb|AF411637.1|AF411637 White spot syndrome virus ORF21 gene, partial sequence Length = 3903 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ccaaagttgttcatcaacac 368 |||||||||||||||||||| Sbjct: 2861 ccaaagttgttcatcaacac 2842
>gb|AF369029.2| White spot syndrome virus, complete genome Length = 292967 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ccaaagttgttcatcaacac 368 |||||||||||||||||||| Sbjct: 54867 ccaaagttgttcatcaacac 54848
>gb|AC011445.6|AC011445 Homo sapiens chromosome 19 clone CTC-246B18, complete sequence Length = 138538 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cgggccgggccggcgcgggg 77 |||||||||||||||||||| Sbjct: 123687 cgggccgggccggcgcgggg 123706
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 ccggcaccggctacgacgagcgcc 126 ||||||||||| |||||||||||| Sbjct: 325448 ccggcaccggcgacgacgagcgcc 325425
>dbj|AP005163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0053M06 Length = 175416 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ggcgagcggcagcggcgagg 51 |||||||||||||||||||| Sbjct: 154349 ggcgagcggcagcggcgagg 154368
>dbj|AP004130.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_B05 Length = 121853 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ggcgagcggcagcggcgagg 51 |||||||||||||||||||| Sbjct: 51226 ggcgagcggcagcggcgagg 51245
>gb|AF532976.1| Prunus persica 1-aminocyclopropane-1-carboxylate oxidase (ACO1) gene, complete cds.~~ Length = 5201 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 gcctaattcacttgattgtcaaca 432 |||||||| ||||||||||||||| Sbjct: 4667 gcctaattaacttgattgtcaaca 4690
>gb|AF440570.1| Shrimp white spot syndrome virus, complete genome Length = 307287 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ccaaagttgttcatcaacac 368 |||||||||||||||||||| Sbjct: 39499 ccaaagttgttcatcaacac 39480
>gb|AC140938.1| Gallus gallus BAC clone TAM32-30F4 from chromosome ul, complete sequence Length = 122857 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 43 gcggcgaggggaaggcgggccgggccgg 70 |||||||||||| | ||||||||||||| Sbjct: 117025 gcggcgaggggaggccgggccgggccgg 117052 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,063,650 Number of Sequences: 3902068 Number of extensions: 4063650 Number of successful extensions: 89578 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87855 Number of HSP's gapped (non-prelim): 1709 length of query: 575 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 552 effective length of database: 17,143,297,704 effective search space: 9463100332608 effective search space used: 9463100332608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
