ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart48e02 |
|---|---|
| Clone Library Name | barley_pub |
>HAL3A_ARATH (Q9SWE5) Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)| (Halotolerance protein Hal3a) (AtHal3a) (PPCDC) (AtCoaC) Length = 209 Score = 187 bits (475), Expect = 2e-47 Identities = 88/110 (80%), Positives = 100/110 (90%) Frame = +2 Query: 257 RPRVLLAASGSVAAIKFESLCRIFSEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEW 436 +PRVLLAASGSVAAIKF +LC F+EWAEVRAV TKS+LHF+D+ SLP +V LYTD+DEW Sbjct: 19 KPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEW 78 Query: 437 STWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 S+W KIGD VLHIELR+WAD++VIAPLSANTL KIAGGLCDNLLTCIIRA Sbjct: 79 SSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRA 128
>HAL3B_ARATH (P94063) Probable phosphopantothenoylcysteine decarboxylase (EC| 4.1.1.36) (Halotolerance protein Hal3b) (AtHal3b) Length = 201 Score = 187 bits (474), Expect = 3e-47 Identities = 86/110 (78%), Positives = 102/110 (92%) Frame = +2 Query: 257 RPRVLLAASGSVAAIKFESLCRIFSEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEW 436 +PR+LLAASGSVA+IKF +LC FSEWAEV+AVA+KS+L+FVD+ SLP +V LYTD+DEW Sbjct: 11 KPRILLAASGSVASIKFSNLCHCFSEWAEVKAVASKSSLNFVDKPSLPQNVTLYTDEDEW 70 Query: 437 STWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 S+W KIGD VLHIELR+WAD+M+IAPLSANTLAKIAGGLCDNLLTCI+RA Sbjct: 71 SSWNKIGDPVLHIELRRWADVMIIAPLSANTLAKIAGGLCDNLLTCIVRA 120
>COAC_MOUSE (Q8BZB2) Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)| (PPC-DC) (CoaC) Length = 204 Score = 114 bits (285), Expect = 2e-25 Identities = 60/128 (46%), Positives = 78/128 (60%), Gaps = 2/128 (1%) Frame = +2 Query: 209 MATSEPVQQSWELESSRPRVLLAASGSVAAIKFESLCRIFSE--WAEVRAVATKSALHFV 382 M P + E + RVL+ +GSVAA+K L + EV V T+ A HF Sbjct: 1 MEPKAPCPAAVPSEERKFRVLVGVTGSVAALKLPLLVSKLLDVPGLEVTVVTTERAKHFY 60 Query: 383 DRSSLPSDVVLYTDDDEWSTWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDN 562 +P V LY+D DEW W + D VLHI+LR+WAD+M++APL ANTL K+A G+CDN Sbjct: 61 SPQDVP--VTLYSDADEWEMWKRRSDPVLHIDLRRWADLMLVAPLDANTLGKVASGICDN 118 Query: 563 LLTCIIRA 586 LLTC+IRA Sbjct: 119 LLTCVIRA 126
>COAC_HUMAN (Q96CD2) Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)| (PPC-DC) (CoaC) Length = 204 Score = 108 bits (270), Expect = 1e-23 Identities = 54/109 (49%), Positives = 71/109 (65%), Gaps = 2/109 (1%) Frame = +2 Query: 266 VLLAASGSVAAIKFESLCRIFSE--WAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWS 439 VL+ +GSVAA+K L + EV V T+ A HF +P V LY+D DEW Sbjct: 20 VLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIP--VTLYSDADEWE 77 Query: 440 TWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 W D VLHI+LR+WAD++++APL ANTL K+A G+CDNLLTC++RA Sbjct: 78 MWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLLTCVMRA 126
>VHS3_YEAST (Q08438) Protein VHS3 (Viable in a HAL3 SIT4 background protein 3)| Length = 674 Score = 95.1 bits (235), Expect = 1e-19 Identities = 43/64 (67%), Positives = 52/64 (81%) Frame = +2 Query: 395 LPSDVVLYTDDDEWSTWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTC 574 LP+ + +TD DEW W + D VLHIELR+WADI+V+APL+ANTLAKIA GLCDNLLT Sbjct: 434 LPAHIQFWTDQDEWDVWRQRTDPVLHIELRRWADILVVAPLTANTLAKIALGLCDNLLTS 493 Query: 575 IIRA 586 +IRA Sbjct: 494 VIRA 497
>SIS2_YEAST (P36024) Protein SIS2 (Halotolerance protein HAL3)| Length = 562 Score = 94.7 bits (234), Expect = 2e-19 Identities = 43/64 (67%), Positives = 52/64 (81%) Frame = +2 Query: 395 LPSDVVLYTDDDEWSTWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTC 574 LP + L+TD DEW W + D VLHIELR+WADI+V+APL+ANTL+KIA GLCDNLLT Sbjct: 353 LPPHIQLWTDQDEWDAWKQRTDPVLHIELRRWADILVVAPLTANTLSKIALGLCDNLLTS 412 Query: 575 IIRA 586 +IRA Sbjct: 413 VIRA 416
>SIS2_CANTR (Q12600) Protein SIS2 (Halotolerance protein HAL3)| Length = 531 Score = 89.4 bits (220), Expect = 7e-18 Identities = 51/117 (43%), Positives = 76/117 (64%), Gaps = 10/117 (8%) Frame = +2 Query: 266 VLLAASGSVAAIKFE----SLCRIF-SEWAEVRAVATKSALHFVDRSSLP-----SDVVL 415 VL+ G+++ K + L I+ S+ ++ + TKS+ +F+ +L V + Sbjct: 270 VLIGVCGALSVGKVKLIVNKLLEIYTSDKISIQVILTKSSENFLLPETLNVLENVKKVRV 329 Query: 416 YTDDDEWSTWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 +TD DEW+TW D VLHIELR+WADI+++ PL+ANTLAKI+ G+CDNLLT +IRA Sbjct: 330 WTDIDEWTTWKTRLDPVLHIELRRWADILLVCPLTANTLAKISLGICDNLLTNVIRA 386
>YKI8_YEAST (P36076) Hypothetical protein YKL088w| Length = 571 Score = 85.9 bits (211), Expect = 8e-17 Identities = 49/118 (41%), Positives = 74/118 (62%), Gaps = 12/118 (10%) Frame = +2 Query: 266 VLLAASGSVAAIK----FESLCRIFS-EWAEVRAVATKSALHFVDRSSLPSDVVLYTDDD 430 +L+ A+GSVA IK + L +I+ E ++ + TK A HF+ + + V ++ ++D Sbjct: 311 ILIGATGSVATIKVPLIIDKLFKIYGPEKISIQLIVTKPAEHFLKGLKMSTHVKIWREED 370 Query: 431 EW------STWTKIG-DEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIR 583 W T + + +LH ELRKWADI +IAPLSANTLAK+A G+C+NLLT ++R Sbjct: 371 AWVFDAVNKNDTSLSLNLILHHELRKWADIFLIAPLSANTLAKLANGICNNLLTSVMR 428
>COABC_SYNY3 (P73881) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 402 Score = 68.2 bits (165), Expect = 2e-11 Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 3/111 (2%) Frame = +2 Query: 263 RVLLAASGSVAAIKF-ESLCRIFSEWAEVRAVATKSALHFVDRSSLPSDV--VLYTDDDE 433 R+L+ G +AA K E + ++F + AEVR + T A FV + + Y D D Sbjct: 6 RILIGVGGGIAAYKICEVVSQLFQQGAEVRVILTAEAEKFVTPLTFTTLARHPAYGDADF 65 Query: 434 WSTWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 W I LHI+L +WADI +IAPL+A+TLAK+ G D+LL+ + A Sbjct: 66 WQP---IHHRPLHIDLGEWADIFLIAPLTAHTLAKLGHGFADDLLSNTVLA 113
>COABC_VIBF1 (Q5E8M6) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 409 Score = 60.1 bits (144), Expect = 5e-09 Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 10/118 (8%) Frame = +2 Query: 263 RVLLAASGSVAAIKFESLCR-IFSEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWS 439 R+LL SG +AA K L R + AEVR V TK+A F+ ++ + Sbjct: 8 RILLGISGGIAAYKCAELTRRLIERGAEVRVVMTKAAKEFITPLTMQA-----------V 56 Query: 440 TWTKIGDEVL---------HIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 + + D +L HIEL KWADI+++AP +A+ +A++A G+ ++LL+ ++ A Sbjct: 57 SGHPVADSLLDPAAEASMGHIELAKWADIVLLAPATADLIARMAAGMGNDLLSTLVLA 114
>COABC_VIBVY (Q7MPS9) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 401 Score = 58.9 bits (141), Expect = 1e-08 Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%) Frame = +2 Query: 263 RVLLAASGSVAAIKFESLCRIFSE-WAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWS 439 ++LL SG +AA K L R E AEV+ V TK+A F+ ++ + D Sbjct: 8 KILLGISGGIAAYKCADLTRRLKERGAEVQVVMTKAAKEFITPLTMQAVSGRPVSDSLLD 67 Query: 440 TWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 + + HIEL KWAD++++AP +A+ +A++A G+ ++LLT ++ A Sbjct: 68 PAAEAS--MGHIELAKWADLILLAPATADLIARMAAGMGNDLLTTLVLA 114
>COABC_VIBVU (Q8DDX8) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 401 Score = 58.9 bits (141), Expect = 1e-08 Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%) Frame = +2 Query: 263 RVLLAASGSVAAIKFESLCRIFSE-WAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWS 439 ++LL SG +AA K L R E AEV+ V TK+A F+ ++ + D Sbjct: 8 KILLGISGGIAAYKCADLTRRLKERGAEVQVVMTKAAKEFITPLTMQAVSGRPVSDSLLD 67 Query: 440 TWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 + + HIEL KWAD++++AP +A+ +A++A G+ ++LLT ++ A Sbjct: 68 PAAEAS--MGHIELAKWADLILLAPATADLIARMAAGMGNDLLTTLVLA 114
>COABC_VIBPA (Q87T89) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 399 Score = 56.6 bits (135), Expect = 5e-08 Identities = 34/109 (31%), Positives = 62/109 (56%), Gaps = 1/109 (0%) Frame = +2 Query: 263 RVLLAASGSVAAIKFESLCR-IFSEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWS 439 ++LL SG +AA K L R + A+V+ V TK+A F+ ++ + D Sbjct: 8 KILLGISGGIAAYKCAELTRRLIERGAQVQVVMTKAAKEFITPLTMQAVSGRPVSDSLLD 67 Query: 440 TWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 + + HIEL KWAD++++AP +A+ +A+++ G+ ++LLT ++ A Sbjct: 68 PAAEAS--MGHIELAKWADLVLLAPATADLIARMSAGMGNDLLTTLVLA 114
>COAC_STRMU (Q54433) Probable phosphopantothenoylcysteine decarboxylase (EC| 4.1.1.36) (PPCDC) Length = 179 Score = 55.8 bits (133), Expect = 9e-08 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 3/111 (2%) Frame = +2 Query: 263 RVLLAASGSVAAIKFESLCRIFSEWA-EVRAVATKSALHFVDRSSLPSDVVLYTDDDEWS 439 ++LLA SGS+AA K L ++ V + T +A F+ P + + + + +S Sbjct: 4 KILLAVSGSIAAYKAADLSHQLTKLGYHVNVLMTNAAKQFIP----PLTLQVLSKNPVYS 59 Query: 440 TWTKIGDE--VLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 K D + HI L K AD+ ++AP SANTLA +A G DN++T + A Sbjct: 60 NVMKEDDPQVINHIALAKQADLFLLAPASANTLAHLAHGFADNIVTSVALA 110
>COABC_ECOLI (P0ABQ0) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 405 Score = 55.5 bits (132), Expect = 1e-07 Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 2/110 (1%) Frame = +2 Query: 263 RVLLAASGSVAAIKFESLCR-IFSEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWS 439 +++L SG +AA K L R + A+VR T++A F+ SL + V Y D S Sbjct: 6 KIVLGVSGGIAAYKTPELVRRLRDRGADVRVAMTEAAKAFITPLSLQA-VSGYPVSD--S 62 Query: 440 TWTKIGDEVL-HIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 + + HIEL KWAD++++AP +A+ +A++A G+ ++L++ I A Sbjct: 63 LLDPAAEAAMGHIELGKWADLVILAPATADLIARVAAGMANDLVSTICLA 112
>COABC_ECOL6 (P0ABQ1) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 405 Score = 55.5 bits (132), Expect = 1e-07 Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 2/110 (1%) Frame = +2 Query: 263 RVLLAASGSVAAIKFESLCR-IFSEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWS 439 +++L SG +AA K L R + A+VR T++A F+ SL + V Y D S Sbjct: 6 KIVLGVSGGIAAYKTPELVRRLRDRGADVRVAMTEAAKAFITPLSLQA-VSGYPVSD--S 62 Query: 440 TWTKIGDEVL-HIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 + + HIEL KWAD++++AP +A+ +A++A G+ ++L++ I A Sbjct: 63 LLDPAAEAAMGHIELGKWADLVILAPATADLIARVAAGMANDLVSTICLA 112
>MRSD_BACSY (Q9RC23) Mersacidin decarboxylase (EC 4.1.1.-)| (Mersacidin-modifying enzyme mrsD) Length = 194 Score = 55.1 bits (131), Expect = 1e-07 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%) Frame = +2 Query: 263 RVLLAASGSVAAIKFESLCRIF-SEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWS 439 ++L+ GS++++ S F S + E+R V TK+A +P+ V Y D +S Sbjct: 10 KLLIGICGSISSVGISSYLLYFKSFFKEIRVVMTKTA-----EDLIPAHTVSYFCDHVYS 64 Query: 440 TWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 + G H+E+ +WADI I P +AN L + A G+ NL+ + A Sbjct: 65 EHGENGKRHSHVEIGRWADIYCIIPATANILGQTANGVAMNLVATTVLA 113
>COABC_VIBCH (Q9KVD1) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 399 Score = 54.3 bits (129), Expect = 3e-07 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 1/109 (0%) Frame = +2 Query: 263 RVLLAASGSVAAIKFESLCR-IFSEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWS 439 ++LL SG +AA K L R + A V+ V T +A F+ ++ + D Sbjct: 8 KILLGISGGIAAYKCAELTRRLVERGATVQVVMTHAAKEFITPLTMQAVSGRPVSDSLLD 67 Query: 440 TWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 + + HIEL KWAD++++AP +A+ +A++A G+ ++LLT +I A Sbjct: 68 PAAEAS--MGHIELAKWADLVLLAPATADLIARMAAGMGNDLLTTLILA 114
>COABC_BORBU (O51752) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 390 Score = 50.8 bits (120), Expect = 3e-06 Identities = 30/108 (27%), Positives = 59/108 (54%), Gaps = 1/108 (0%) Frame = +2 Query: 266 VLLAASGSVAAIKFESLCRIFSEWA-EVRAVATKSALHFVDRSSLPSDVVLYTDDDEWST 442 +L+ G +A+ K + + +V+ + T++A F+ +L + + + + Sbjct: 7 ILIGICGGIASYKSVYIVSSLVKLGYKVKVIMTQNATKFITPLTLET---ISKNKIITNL 63 Query: 443 WTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 W +EV HI++ KWA ++++ P + NT++KIA G+ D+ LT II A Sbjct: 64 WDLDHNEVEHIKIAKWAHLILVIPATYNTISKIASGIADDALTTIISA 111
>COABC_HAEIN (P44953) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 400 Score = 50.8 bits (120), Expect = 3e-06 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 1/108 (0%) Frame = +2 Query: 266 VLLAASGSVAAIKFESLCRIFSEW-AEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWST 442 +++ +G +AA K L R+ + AEVR V T +A FV +L + Sbjct: 8 IVVGITGGIAAYKTIELIRLLRKAEAEVRVVLTPAAAEFVTPLTLQAISGNAVSQSLLDP 67 Query: 443 WTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIIRA 586 ++ + HIEL KWAD ++IAP SA+ +A++ G+ ++LL+ I A Sbjct: 68 QAELA--MGHIELAKWADAIIIAPASADFIARLTIGMANDLLSTICLA 113
>COABC_MYCTU (P67733) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 418 Score = 48.9 bits (115), Expect = 1e-05 Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 3/109 (2%) Frame = +2 Query: 263 RVLLAASGSVAAIKFESLCRIFSEWAE-VRAVATKSALHFVDRSSLP--SDVVLYTDDDE 433 +V++ SG +AA K ++ R +E + VR + T+SAL FV ++ S + TD Sbjct: 10 QVIVGVSGGIAAYKACTVVRQLTEASHRVRVIPTESALRFVGAATFEALSGEPVCTD--- 66 Query: 434 WSTWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCII 580 + + V H+ L + AD++V+AP +A+ LA+ A G D+LLT + Sbjct: 67 --VFADV-PAVPHVHLGQQADLVVVAPATADLLARAAAGRADDLLTATL 112
>COABC_MYCBO (P67734) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 418 Score = 48.9 bits (115), Expect = 1e-05 Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 3/109 (2%) Frame = +2 Query: 263 RVLLAASGSVAAIKFESLCRIFSEWAE-VRAVATKSALHFVDRSSLP--SDVVLYTDDDE 433 +V++ SG +AA K ++ R +E + VR + T+SAL FV ++ S + TD Sbjct: 10 QVIVGVSGGIAAYKACTVVRQLTEASHRVRVIPTESALRFVGAATFEALSGEPVCTD--- 66 Query: 434 WSTWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCII 580 + + V H+ L + AD++V+AP +A+ LA+ A G D+LLT + Sbjct: 67 --VFADV-PAVPHVHLGQQADLVVVAPATADLLARAAAGRADDLLTATL 112
>EPID_STAEP (P30197) Epidermin decarboxylase (EC 4.1.1.-) (Epidermin-modifying| enzyme epiD) Length = 181 Score = 45.8 bits (107), Expect = 9e-05 Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 2/107 (1%) Frame = +2 Query: 263 RVLLAASGSVAAIKFES-LCRIFSEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWS 439 ++L+ A+ S+ I + + + EV + + S+ +F++ L L+ D+ Sbjct: 4 KLLICATASINVININHYIVELKQHFDEVNILFSPSSKNFINTDVLK----LFCDN---- 55 Query: 440 TWTKIGDEVL-HIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCI 577 + +I D +L HI + + + +++ P SANT+ KIA G+CDNLLT + Sbjct: 56 LYDEIKDPLLNHINIVENHEYILVLPASANTINKIANGICDNLLTTV 102
>Y730_METJA (Q58140) Hypothetical protein MJ0730| Length = 186 Score = 33.9 bits (76), Expect = 0.36 Identities = 14/26 (53%), Positives = 20/26 (76%) Frame = +2 Query: 494 DIMVIAPLSANTLAKIAGGLCDNLLT 571 D+ ++AP +ANT AKIA G+ D L+T Sbjct: 82 DLFLVAPATANTTAKIAYGIADTLIT 107
>PAAD_DEIRA (Q9RR91) Probable aromatic acid decarboxylase (EC 4.1.1.-)| Length = 195 Score = 32.3 bits (72), Expect = 1.0 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = +2 Query: 500 MVIAPLSANTLAKIAGGLCDNLLT 571 M+I P SA TLAK+A G DNL++ Sbjct: 88 MLIVPCSAGTLAKVAHGFADNLIS 111
>DBP10_ASPFU (Q8NJM2) ATP-dependent RNA helicase dbp10 (EC 3.6.1.-)| Length = 869 Score = 32.3 bits (72), Expect = 1.0 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 9/66 (13%) Frame = -1 Query: 411 TTSLGRDDLSTKC---------NADLVATARTSAHSEKIRQRLSNFIAATLPEAARRTRG 259 T SL RD LS C NADL A +A EK+ R N AA+L E+A+R++ Sbjct: 495 TGSLPRDGLSQSCEWVTKVLDDNADLAAQRTVAAKGEKLYMRTRN--AASL-ESAKRSKQ 551 Query: 258 LLDSSS 241 ++ S + Sbjct: 552 VVSSDN 557
>SYI_FRATT (Q5NGD0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 935 Score = 32.3 bits (72), Expect = 1.0 Identities = 21/87 (24%), Positives = 43/87 (49%) Frame = +2 Query: 293 AAIKFESLCRIFSEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWSTWTKIGDEVLH 472 A + E +I +EV V V ++SL +++ +Y D ++ K+G+E+ Sbjct: 799 AELDLEYWAKIQEIRSEVNRVLEIKRNEDVIKASLEAEITIYADKYNYNLLEKLGNELRF 858 Query: 473 IELRKWADIMVIAPLSANTLAKIAGGL 553 + + AD+ VI +++++A GL Sbjct: 859 LLISSKADLKVIEESTSSSIAANIPGL 885
>PAAD_THEAC (Q9HJ72) Probable aromatic acid decarboxylase (EC 4.1.1.-)| Length = 180 Score = 32.0 bits (71), Expect = 1.4 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +2 Query: 494 DIMVIAPLSANTLAKIAGGLCDNLLT 571 D MVI P S T++KIA G+ D L+T Sbjct: 76 DSMVIVPCSITTISKIAAGISDTLIT 101
>PAAD_PYRAB (Q9V030) Probable aromatic acid decarboxylase (EC 4.1.1.-)| Length = 181 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = +2 Query: 494 DIMVIAPLSANTLAKIAGGLCDNLLT 571 D MVIAP S TL+ IA G +NL+T Sbjct: 71 DAMVIAPCSMKTLSAIANGFSNNLIT 96
>PAAD_NEIMB (Q9JXP4) Probable aromatic acid decarboxylase (EC 4.1.1.-)| Length = 189 Score = 31.6 bits (70), Expect = 1.8 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = +2 Query: 494 DIMVIAPLSANTLAKIAGGLCDNLLT 571 D M++AP S TLA +A G DNLLT Sbjct: 80 DGMLVAPCSMRTLASVAHGFGDNLLT 105
>LHR_ECOLI (P30015) Probable ATP-dependent helicase lhr (EC 3.6.1.-) (Large| helicase-related protein) Length = 1538 Score = 31.2 bits (69), Expect = 2.3 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = +1 Query: 445 DKDRRRGSAHRAAKVGRHHGDRPLISKHSGQDRRRVMRQPPDV 573 D+ RRRG +VG GD P Q+R ++ R PPD+ Sbjct: 114 DERRRRGETEVNLRVGIRTGDTP------AQERSKLTRNPPDI 150
>PAAD_BACSU (P94404) Probable aromatic acid decarboxylase (EC 4.1.1.-)| Length = 204 Score = 31.2 bits (69), Expect = 2.3 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +2 Query: 494 DIMVIAPLSANTLAKIAGGLCDNLLT 571 D M++AP S +LA I G+ DNLLT Sbjct: 90 DGMIVAPCSMKSLASIRTGMADNLLT 115
>DDL_STAAR (Q6GEZ1) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 356 Score = 30.8 bits (68), Expect = 3.0 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Frame = +2 Query: 308 ESLCRIF---SEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWSTWTKIGDEV---- 466 E++C +F S EV + ++ L+ +D+ D++ T+D +W I E+ Sbjct: 4 ENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTD 63 Query: 467 -LHIE 478 LH+E Sbjct: 64 ELHLE 68
>DDL_STAAW (Q8NVH8) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 356 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Frame = +2 Query: 308 ESLCRIF---SEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWSTWTKIGDEV---- 466 E++C +F S EV + ++ L+ +D+ D++ T+D +W I E+ Sbjct: 4 ENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIISTD 63 Query: 467 -LHIE 478 LH+E Sbjct: 64 ELHLE 68
>DDL_STAAS (Q6G7M7) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 356 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Frame = +2 Query: 308 ESLCRIF---SEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWSTWTKIGDEV---- 466 E++C +F S EV + ++ L+ +D+ D++ T+D +W I E+ Sbjct: 4 ENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIISTD 63 Query: 467 -LHIE 478 LH+E Sbjct: 64 ELHLE 68
>DDL_STAAN (P63892) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 356 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Frame = +2 Query: 308 ESLCRIF---SEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWSTWTKIGDEV---- 466 E++C +F S EV + ++ L+ +D+ D++ T+D +W I E+ Sbjct: 4 ENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTD 63 Query: 467 -LHIE 478 LH+E Sbjct: 64 ELHLE 68
>DDL_STAAM (P63891) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 356 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Frame = +2 Query: 308 ESLCRIF---SEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWSTWTKIGDEV---- 466 E++C +F S EV + ++ L+ +D+ D++ T+D +W I E+ Sbjct: 4 ENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTD 63 Query: 467 -LHIE 478 LH+E Sbjct: 64 ELHLE 68
>DDL_STAAC (Q5HEB7) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 356 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Frame = +2 Query: 308 ESLCRIF---SEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWSTWTKIGDEV---- 466 E++C +F S EV + ++ L+ +D+ D++ T+D +W I E+ Sbjct: 4 ENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTD 63 Query: 467 -LHIE 478 LH+E Sbjct: 64 ELHLE 68
>SURE_DEIRA (Q9RRT8) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 268 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +2 Query: 251 SSRPRVLLAASGSVAAIKFESLCRIFSEWAEVRAVA 358 S+RPRVL+A + A ++L SEWA+V VA Sbjct: 14 SARPRVLVANDDGIFAPGIKALGLALSEWADVVVVA 49
>PYRB_CLOPE (Q8XL59) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 307 Score = 30.4 bits (67), Expect = 4.0 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Frame = -1 Query: 540 ILARVFADKGAITMMSAHFRSSMCRTSSPIFVQVDHSSSSV*RTTSLGRDDLST-KCNAD 364 ILA +F + T +S F S+M R + + +SSSV + SL RD + T C AD Sbjct: 43 ILATLFYEPSTRTRLS--FESAMLRLGGQVIGFSEPNSSSVSKGESL-RDTIKTVNCYAD 99 Query: 363 LVATARTSAHSEKIRQRLSN 304 L+A + K+ S+ Sbjct: 100 LIAMRHPLEGAAKVASMYSD 119
>SECB_PSEPK (Q88CX7) Protein-export protein secB| Length = 161 Score = 30.0 bits (66), Expect = 5.2 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +2 Query: 437 STWTKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLL 568 S K GDEV I + A I +IA L A +++ G C N+L Sbjct: 70 SVTVKNGDEVAFIAEVQQAGIFLIANLDAPSMSHTLGAFCPNIL 113
>Y208_METJA (Q57661) Hypothetical protein MJ0208| Length = 246 Score = 30.0 bits (66), Expect = 5.2 Identities = 10/26 (38%), Positives = 19/26 (73%) Frame = +2 Query: 494 DIMVIAPLSANTLAKIAGGLCDNLLT 571 D ++ +P + NT+AK+ G+ D+L+T Sbjct: 96 DYLICSPATGNTVAKVVNGIADSLVT 121
>PAAD_PYRHO (O58742) Probable aromatic acid decarboxylase (EC 4.1.1.-)| Length = 181 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/26 (57%), Positives = 16/26 (61%) Frame = +2 Query: 494 DIMVIAPLSANTLAKIAGGLCDNLLT 571 D MVIAP S TL IA G NL+T Sbjct: 71 DAMVIAPCSMKTLGAIANGFSYNLIT 96
>PAAD_NEIMA (Q9JW78) Probable aromatic acid decarboxylase (EC 4.1.1.-)| Length = 189 Score = 30.0 bits (66), Expect = 5.2 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = +2 Query: 494 DIMVIAPLSANTLAKIAGGLCDNLLT 571 D M++AP S TLA + G DNLLT Sbjct: 80 DGMLVAPCSMRTLASVVHGFGDNLLT 105
>IF2_LACJO (Q74IS8) Translation initiation factor IF-2| Length = 880 Score = 30.0 bits (66), Expect = 5.2 Identities = 18/64 (28%), Positives = 32/64 (50%) Frame = -1 Query: 354 TARTSAHSEKIRQRLSNFIAATLPEAARRTRGLLDSSSQLCCTGSDVAICFTWSPQLRGD 175 TA++ A SE + RL N I + + +G+L+ + + TG ++ + TW G Sbjct: 745 TAKSQADSEGVDIRLYNIIYKVMDDVEAAMKGMLEPTYEEKVTG-NLTVRETWKVSKIGT 803 Query: 174 LVGA 163 + GA Sbjct: 804 IAGA 807
>DDL_STAES (Q8CRP5) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 357 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +2 Query: 308 ESLCRIF---SEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWSTWTKIGDEV 466 E++C +F S +V + ++ L+ +D+ D++ T+D EW I E+ Sbjct: 4 ENICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEI 59
>DDL_STAEQ (Q5HMD8) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 357 Score = 29.6 bits (65), Expect = 6.7 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +2 Query: 308 ESLCRIF---SEWAEVRAVATKSALHFVDRSSLPSDVVLYTDDDEWSTWTKIGDEV 466 E++C +F S +V + ++ L+ +D+ D++ T+D EW I E+ Sbjct: 4 ENICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEI 59
>PAAD_PSEAE (Q9HX08) Probable aromatic acid decarboxylase (EC 4.1.1.-)| Length = 209 Score = 29.3 bits (64), Expect = 8.8 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +2 Query: 500 MVIAPLSANTLAKIAGGLCDNLL 568 MVI P S TL+ +A G C+NL+ Sbjct: 98 MVICPCSTGTLSAVATGACNNLI 120
>RUVX_AZOSE (Q5P6I6) Putative Holliday junction resolvase (EC 3.1.-.-)| Length = 156 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +2 Query: 242 ELESSRPRVLLAASGSVAAIKFESLCRIFSEWAEVRAV 355 ELE+ R LL G +A +F ++ ++ EW V V Sbjct: 34 ELETRRASALLTLHGEASAPRFAAIAKLLDEWRPVGLV 71 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,913,260 Number of Sequences: 219361 Number of extensions: 1574968 Number of successful extensions: 4670 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 4545 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4665 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
