>MUTS_BORBR (Q7WLT5) DNA mismatch repair protein mutS|
          Length = 876

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
 Frame = +3

Query: 12  CQTGQTSRSKTRTGQDACAH--------PGHHRPLDPIRRRHLILRARVSWEE 146
           C  G   R   RT   A AH        PG +  LDP+ RR+L L   +S EE
Sbjct: 234 CAAGALLRYAARTQSQALAHVQTIAAERPGQYVLLDPVTRRNLELTQTLSGEE 286

>MUTS_BORPA (Q7W880) DNA mismatch repair protein mutS|
          Length = 883

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
 Frame = +3

Query: 12  CQTGQTSRSKTRTGQDACAH--------PGHHRPLDPIRRRHLILRARVSWEE 146
           C  G   R   RT   A AH        PG +  LDP+ RR+L L   +S EE
Sbjct: 241 CAAGALLRYAARTQSQALAHVQTIAAERPGQYVLLDPVTRRNLELTQTLSGEE 293

>EBNA1_EBV (P03211) Epstein-Barr nuclear antigen 1 (EBV nuclear antigen 1)|
           (EBNA-1)
          Length = 641

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -2

Query: 474 RGASGSDGWRRRNQHGWTRNGSGGKRGR 391
           RG  GS G  R    G  R GSGG+RGR
Sbjct: 329 RGRGGSGGRGRGGSGGRGRGGSGGRRGR 356

>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4|
          Length = 376

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = +1

Query: 382 GGSSSPLPPTSVPRPTMLIPSSPTV*P*RAADGWWPVAPGAG 507
           GGSS+P P TS   P  + PS+PT  P   A    P    AG
Sbjct: 30  GGSSAPAPSTS---PNSISPSNPTGTPAPGASAQTPNPNAAG 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,125,474
Number of Sequences: 219361
Number of extensions: 909015
Number of successful extensions: 4011
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4005
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)