>RS30_ARATH (P49689) 40S ribosomal protein S30|
          Length = 62

 Score =  124 bits (310), Expect = 1e-28
 Identities = 59/62 (95%), Positives = 62/62 (100%)
 Frame = +2

Query: 86  MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 265
           MGKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 266 EK 271
           EK
Sbjct: 61  EK 62

>RS30_RAT (P62864) 40S ribosomal protein S30|
          Length = 59

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 44/58 (75%), Positives = 51/58 (87%)
 Frame = +2

Query: 92  KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 265
           KVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

>RS30_PIG (P62863) 40S ribosomal protein S30|
          Length = 59

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 44/58 (75%), Positives = 51/58 (87%)
 Frame = +2

Query: 92  KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 265
           KVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

>RS30_MUSSI (P62867) 40S ribosomal protein S30|
          Length = 59

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 44/58 (75%), Positives = 51/58 (87%)
 Frame = +2

Query: 92  KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 265
           KVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

>RS30_MOUSE (P62862) 40S ribosomal protein S30|
          Length = 59

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 44/58 (75%), Positives = 51/58 (87%)
 Frame = +2

Query: 92  KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 265
           KVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

>RS30_HUMAN (P62861) 40S ribosomal protein S30|
          Length = 59

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 44/58 (75%), Positives = 51/58 (87%)
 Frame = +2

Query: 92  KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 265
           KVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

>RS30_CRIGR (P62860) 40S ribosomal protein S30|
          Length = 59

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 44/58 (75%), Positives = 51/58 (87%)
 Frame = +2

Query: 92  KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 265
           KVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

>RS30_BOVIN (P62866) 40S ribosomal protein S30|
          Length = 59

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 44/58 (75%), Positives = 51/58 (87%)
 Frame = +2

Query: 92  KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 265
           KVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

>RS30_ORYLA (Q9W6Y0) 40S ribosomal protein S30|
          Length = 59

 Score = 82.4 bits (202), Expect = 4e-16
 Identities = 39/58 (67%), Positives = 47/58 (81%)
 Frame = +2

Query: 92  KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 265
           KVHGSLARAGKVRGQTP V K ++K++  GRA +RIQYNRRFV  V  FGKK+G N++
Sbjct: 1   KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANAN 58

>RS30_SCHPO (O42952) 40S ribosomal protein S30|
          Length = 61

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 40/60 (66%), Positives = 45/60 (75%)
 Frame = +2

Query: 86  MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 265
           MGKVHGSLARAGKV+ QTPKV KQ+K KQP+GRA+KR+ Y RRFV      G KR  N S
Sbjct: 1   MGKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPS 60

>RS30_PLAF7 (O96269) 40S ribosomal protein S30|
          Length = 58

 Score = 75.5 bits (184), Expect = 5e-14
 Identities = 40/59 (67%), Positives = 44/59 (74%)
 Frame = +2

Query: 86  MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNS 262
           MGKVHGSLARAGKV+ QTPKV K DKKK+  GRA KR  YNRRF       G+K+GPNS
Sbjct: 1   MGKVHGSLARAGKVKNQTPKVPKLDKKKRLTGRAKKRQLYNRRFSD---NGGRKKGPNS 56

>RS30_YEAST (Q12087) 40S ribosomal protein S30|
          Length = 62

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +2

Query: 92  KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKR 250
           KVHGSLARAGKV+ QTPKV K +K K+P+GRA+KR+ Y RRFV   +  GK+R
Sbjct: 2   KVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRR 54

>RS30_AERPE (Q9Y9T9) 30S ribosomal protein S30|
          Length = 50

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +2

Query: 98  HGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRR 214
           HGSL +AGKVR QTP++  + KK  P  R   R++Y  R
Sbjct: 4   HGSLTKAGKVRKQTPRLPAKQKKNYP-PRLKNRLKYQVR 41

>YB71_SCHPO (O14318) Hypothetical protein C16E9.01c in chromosome II|
          Length = 295

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +3

Query: 21  AARAPSVHLADRSAAAPPPQQPWVRCTDRWRVPGR 125
           ++++PS  +   S+A+P PQ+P +R + +W VP R
Sbjct: 3   SSKSPS-EVEKSSSASPAPQKPMIRVSKQWVVPPR 36

>BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)|
          Length = 550

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 9   PDAAAARAPSVHLADRSAAAPPPQQPWVRCTDRWRVPGR 125
           P        S H+  R+  AP  Q+PW+    RW+V  R
Sbjct: 514 PSIMTGEKASDHILGRTPLAPSNQEPWI--NPRWQVSDR 550

>SYH_METTH (O26346) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 425

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = -1

Query: 312 TKKEG*RETGWIYYFSDELGPRFLPKPTTAVTKRRLYWMRLWARPRGC---FFLSCF 151
           T K G      IY+F+D+ G     +P       RLY   +  +P+     +F SCF
Sbjct: 51  TVKSGEEVVNQIYHFTDKGGRELALRPELTAPVARLYMNEMQKKPKPIKMYYFGSCF 107

>XKR6_RAT (Q5GH57) XK-related protein 6|
          Length = 638

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 3   LQPDAAAARAPSVHLADR-SAAAPPPQQPWVRC 98
           LQP  AA R P    A R   A+P  ++PW+ C
Sbjct: 94  LQPPGAAGRHPPTPSAGRPQPASPQVERPWLDC 126

>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor|
          Length = 2213

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = -2

Query: 416  ISITNTTVNYRHLIRSSS*HAYGNGPKATGEQANKQKRRGSA------RPAGSTTSPTSW 255
            + + N T + ++L+  S+ +A G+GPK+  +Q    +    A          STT   SW
Sbjct: 1763 VRLKNLTSHTKYLVSISAFNAAGDGPKSDPQQGRTHQAAPGAPSFLAFSEITSTTLNVSW 1822

Query: 254  G 252
            G
Sbjct: 1823 G 1823


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,467,289
Number of Sequences: 219361
Number of extensions: 800002
Number of successful extensions: 2523
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2518
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)