ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart45h08 |
|---|---|
| Clone Library Name | barley_pub |
>PCD15_MOUSE (Q99PJ1) Protocadherin-15 precursor| Length = 1943 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%) Frame = +1 Query: 28 PLPSPPIP---VRTTTAPILASPPGPQRP 105 PLP PP+P + TT P+ SPP P P Sbjct: 1750 PLPHPPLPRPPIAFTTFPLPLSPPNPPPP 1778
>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding| SR-like protein RA4) Length = 1147 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +1 Query: 4 TDTTTSRFPLPSPPIPVRTTTAPILASPPGPQRPIG 111 T T + P+P V AP ASPP PQ P G Sbjct: 286 TTTAPAAAVPPAPTATVPAAAAPAAASPPPPQAPFG 321
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 4 TDTTTSRFPLPSPPIPVRTTTAPILASPPGP 96 T TTT+ P +P P+ TTT P+ + P P Sbjct: 1426 TTTTTTPPPTTTPSPPITTTTTPLPTTTPSP 1456 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +1 Query: 10 TTTSRFPLPSPPIPVRTTTAPILASPPGP 96 TTT+ P +P P+ TTT P + P P Sbjct: 1444 TTTTPLPTTTPSPPISTTTTPPPTTTPSP 1472 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 Query: 4 TDTTTSRFPLPSPPIPVRTTTAPILASPPGP 96 T T T+ P +P P+ TTT P + P P Sbjct: 1693 TTTMTTPSPTTTPSSPITTTTTPSSTTTPSP 1723
>KS6B2_MOUSE (Q9Z1M4) Ribosomal protein S6 kinase beta-2 (EC 2.7.11.1) (S6K-beta| 2) (70 kDa ribosomal protein S6 kinase 2) (p70-S6KB) (p70 ribosomal S6 kinase beta) (p70 S6Kbeta) (S6K2) Length = 485 Score = 30.0 bits (66), Expect = 2.4 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 Query: 28 PLPSPPIPVRTTTAPILASPPGP 96 P P PP P+ + P+L SPP P Sbjct: 435 PSPGPPEPMEPSLPPLLPSPPSP 457 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +1 Query: 31 LPSPPIPVRTTTAPILASPP 90 LPSPP P T+TAP+ PP Sbjct: 451 LPSPPSPPPTSTAPLPIRPP 470
>ADRB1_MACMU (P47899) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 480 Score = 30.0 bits (66), Expect = 2.4 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = +1 Query: 19 SRFPLPSP-PIPVRTTTAPILASPPGPQRPIGASA 120 +R P PSP P P +P+ A PPGP RP A+A Sbjct: 270 ARPPSPSPSPSP-----SPVPAPPPGPPRPAAAAA 299
>DYNA_NEUCR (Q01397) Dynactin, 150 kDa isoform (150 kDa dynein-associated| polypeptide) (DP-150) (DAP-150) (p150-glued) Length = 1300 Score = 29.3 bits (64), Expect = 4.0 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Frame = +1 Query: 13 TTSRFPLPSPPIP-VRTTTAPILAS-----PPGPQRPIGASA*LALHSSTQQ 150 +TSR + PP P RTT P ++S G RP+G A ++ SST + Sbjct: 118 STSRHSMGPPPTPTTRTTRKPSVSSVGTRPSIGATRPVGGRASMSARSSTNR 169
>APA_MYCTU (Q50906) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (Immunogenic protein MPT32) (Antigen MPT-32) (45-kDa glycoprotein) (FAP-B) Length = 325 Score = 29.3 bits (64), Expect = 4.0 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +1 Query: 13 TTSRFPLPSPPIPVRTTTAP-ILASPPGPQRPI 108 T + P P+PP+P + P A+PP P P+ Sbjct: 36 TANADPEPAPPVPTTAASPPSTAAAPPAPATPV 68
>APA_MYCBO (O30620) Alanine and proline-rich secreted protein apa precursor| (Fibronectin attachment protein) (45/47 kDa antigen) (FAP-B) Length = 325 Score = 29.3 bits (64), Expect = 4.0 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +1 Query: 13 TTSRFPLPSPPIPVRTTTAP-ILASPPGPQRPI 108 T + P P+PP+P + P A+PP P P+ Sbjct: 36 TANADPEPAPPVPTTAASPPSTAAAPPAPATPV 68
>SETB1_MOUSE (O88974) Histone-lysine N-methyltransferase, H3 lysine-9 specific 4| (EC 2.1.1.43) (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (SET domain bifurcated 1) (ERG-associated protein with SET domain) (ESET) Length = 1307 Score = 28.9 bits (63), Expect = 5.3 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = +1 Query: 4 TDTTTSRFPLPSPPIPVRTTTAPILASPPGPQRP 105 T T S P P PP+P T P +PPGP P Sbjct: 533 TSTPASAAP-PVPPVPPGPPTPPGPPAPPGPLAP 565
>ATC4_SCHPO (O14072) Cation-transporting ATPase 4 (EC 3.6.3.-)| Length = 1211 Score = 28.5 bits (62), Expect = 6.9 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = +1 Query: 22 RFPLPSPPIPVRTTTAPILASPPGPQRP 105 RF LP+PP+P A A PPGP P Sbjct: 874 RFNLPTPPVP----PALCHAFPPGPNNP 897
>TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain-binding protein 7)| (Fragment) Length = 290 Score = 28.5 bits (62), Expect = 6.9 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%) Frame = +1 Query: 13 TTSRFPLPSPPIPVRTTTA----PILASPPGPQRPIGASA 120 T RF PP P + + P+ SPP PQ P+ S+ Sbjct: 177 TPRRFMDEDPPKPPKVEASIVRPPVATSPPAPQEPVPVSS 216
>TACC2_MOUSE (Q9JJG0) Transforming acidic coiled-coil-containing protein 2| Length = 1035 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = +1 Query: 10 TTTSRFPLPSPPIPVRTTTAPILASPPGPQRP 105 TT + P PP P T P + PP P+ P Sbjct: 37 TTPVKAPPAPPPPPPEVTPEPEVIDPPAPEEP 68
>MMPS3_MYCTU (P65378) Putative membrane protein mmpS3| Length = 299 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 7/44 (15%) Frame = +1 Query: 10 TTTSRFPLPSPP-------IPVRTTTAPILASPPGPQRPIGASA 120 TTT P P PP IP T T + +PP P P +A Sbjct: 146 TTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPPPPPATTTA 189
>MMPS3_MYCBO (P65379) Putative membrane protein mmpS3| Length = 299 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 7/44 (15%) Frame = +1 Query: 10 TTTSRFPLPSPP-------IPVRTTTAPILASPPGPQRPIGASA 120 TTT P P PP IP T T + +PP P P +A Sbjct: 146 TTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPPPPPATTTA 189
>LRP3_RAT (O88204) Low-density lipoprotein receptor-related protein 3| precursor (rLRp105) Length = 770 Score = 28.5 bits (62), Expect = 6.9 Identities = 13/26 (50%), Positives = 13/26 (50%) Frame = +1 Query: 28 PLPSPPIPVRTTTAPILASPPGPQRP 105 PL P PV T P LA P PQ P Sbjct: 706 PLEDSPAPVDTPPEPCLAQDPHPQTP 731
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 28.5 bits (62), Expect = 6.9 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +1 Query: 28 PLPSPPIPVRTTTAPILASPPGPQRPIGAS 117 P PSPP+P + AP +PP P P+ S Sbjct: 161 PSPSPPVP--PSPAPPSPTPPSPSPPVPPS 188 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 28 PLPSPPIPVRTTTAPILASPPGP 96 P PSPP PV + AP+ SP P Sbjct: 306 PSPSPPSPVPPSPAPVPPSPAPP 328 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +1 Query: 34 PSPPIPVRTTTAPILASPPGPQRP 105 P+PP PV + AP +PP P+ P Sbjct: 239 PAPPSPVPPSPAPPSPAPPSPKPP 262 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 Query: 28 PLPSPPIPVRTTTAPILASPPGPQRP 105 P P+PP P + AP +PP P P Sbjct: 99 PSPAPPSPAPPSPAPPSPAPPSPPSP 124
>KIF1C_MOUSE (O35071) Kinesin-like protein KIF1C| Length = 1100 Score = 28.5 bits (62), Expect = 6.9 Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 8/72 (11%) Frame = +1 Query: 28 PLPSPPIPVRTTTAPILASPPGPQRP--------IGASA*LALHSSTQQQQHLIPXXXXX 183 P P PP V AP PP P+RP G S S+ + QHL P Sbjct: 999 PAPQPPEEVTVPPAPPNRRPPSPRRPHRSRRNSLDGGSRSRGGGSTQPEPQHLRPQKHNG 1058 Query: 184 XXXXXXPRRARR 219 P A+R Sbjct: 1059 YPQQPQPSPAQR 1070
>HXA2B_BRARE (O42365) Homeobox protein Hox-A2b (Hox-A2)| Length = 363 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = +1 Query: 1 STDTTTSRFPLPSPPIPVRTTT-APILAS 84 S D FP PSP +P+ TTT AP AS Sbjct: 267 SNDKHLKHFPNPSPTVPICTTTMAPDCAS 295
>GRLF1_HUMAN (Q9NRY4) Glucocorticoid receptor DNA-binding factor 1 (Glucocorticoid| receptor repression factor 1) (GRF-1) (Rho GAP p190A) (p190-A) Length = 1513 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +1 Query: 1 STDTTTSRFPLPSPPIPVRTTTAPILASPPGPQRP 105 ST T+ P SPP ++ P+L SP P RP Sbjct: 1464 STPVTSQPSPPQSPPPTPQSPMQPLLPSPLHPHRP 1498
>ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline-rich protein| 1) (NDPP-1) Length = 802 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +1 Query: 28 PLPSPPIPVRTTTAPILASPPGPQRP 105 P P PP+P A L PPGP P Sbjct: 545 PPPPPPLPSGPAYASALPPPPGPPPP 570
>BBC1_YEAST (P47068) Myosin tail region-interacting protein MTI1 (BBC1 protein)| Length = 1157 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%) Frame = +1 Query: 34 PSPPIPVRTTTAPILAS------PPGPQRPIGASA*LALHSSTQQQQHL 162 P PP+P ++ P L++ PP P P A LAL + ++H+ Sbjct: 729 PVPPVPPVSSAPPALSAPSIPPVPPTPPAPPAPPAPLALPKHNEVEEHV 777
>ADRB1_HUMAN (P08588) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 477 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = +1 Query: 19 SRFPLPSP-PIPVRTTTAPILASPPGPQRPIGASA 120 +R P PSP P+P AP A PPGP RP A+A Sbjct: 270 ARPPSPSPSPVP-----AP--APPPGPPRPAAAAA 297 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,868,954 Number of Sequences: 219361 Number of extensions: 584844 Number of successful extensions: 4094 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3046 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4016 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
