ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart44e01 |
|---|---|
| Clone Library Name | barley_pub |
>CTNS_ARATH (P57758) Cystinosin homolog| Length = 270 Score = 233 bits (594), Expect = 3e-61 Identities = 101/156 (64%), Positives = 128/156 (82%) Frame = +1 Query: 112 SSWNSVGLGVLYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFLVLNFTKHSSYLI 291 +SWNS+ L + Y+++GW+AF +WS SFYPQ++LN+RR+SVVGLNFDF++LN TKHSSY+I Sbjct: 2 ASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYMI 61 Query: 292 YNAALFFSPFIQKQYHDKFGDKEMIPVAANDVAFSLHAVALTSFTLYQVFIYERGQQKVS 471 YN L+FSP IQKQY D +GDKEMIPVAANDVAFS+HAV +T+ TL+Q+FIYERG QKVS Sbjct: 62 YNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVS 121 Query: 472 KVCISITAVVWSAAIVCLIVAWPKSDWLWLIDVFNS 579 ++ I I VVW A +C +A P WLWLI +FNS Sbjct: 122 RLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNS 157 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +1 Query: 142 LYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFLVLNFT 270 L + + F + PQ +N+ RKS VG + ++L+FT Sbjct: 151 LISIFNSIQVFMTCVKYIPQAKMNFTRKSTVGWSIGNILLDFT 193
>CTNS_HUMAN (O60931) Cystinosin| Length = 367 Score = 131 bits (330), Expect = 1e-30 Identities = 65/137 (47%), Positives = 91/137 (66%) Frame = +1 Query: 124 SVGLGVLYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFLVLNFTKHSSYLIYNAA 303 S + ++ QVIGW+ F AWS SFYPQV++N+RRKSV+GL+FDF+ LN T +Y ++N Sbjct: 120 SSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSVFNIG 179 Query: 304 LFFSPFIQKQYHDKFGDKEMIPVAANDVAFSLHAVALTSFTLYQVFIYERGQQKVSKVCI 483 L + P+I++Q+ K+ + PV +NDV FSLHAV LT + Q +YERG Q+VS I Sbjct: 180 LLWVPYIKEQFLLKY-PNGVNPVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAI 238 Query: 484 SITAVVWSAAIVCLIVA 534 + W A V +IVA Sbjct: 239 GFLVLAWLFAFVTMIVA 255 Score = 31.6 bits (70), Expect = 1.8 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%) Frame = +1 Query: 151 VIGWVAF-FAWSF--------SFYPQVVLNYRRKSVVGLNFDFLVLNFTKHSSYLIYNAA 303 VI W+ F F +S+ ++PQ +N+ KS G + ++L+FT S L+ Sbjct: 259 VITWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLL---Q 315 Query: 304 LFFSPFIQKQYHDKFGDKEMIPVAANDVAFSLHAVALTSFTLYQ 435 +F + Q+ FGD + + F + + F LY+ Sbjct: 316 MFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDV-VFFIQHFCLYR 358
>CTNS_MOUSE (P57757) Cystinosin| Length = 367 Score = 130 bits (327), Expect = 3e-30 Identities = 64/134 (47%), Positives = 89/134 (66%) Frame = +1 Query: 133 LGVLYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFLVLNFTKHSSYLIYNAALFF 312 + ++ QVIGW+ F AWS SFYPQV+ N+RRKSV+GL+FDFL LN T +Y ++N L + Sbjct: 123 VSIINQVIGWIYFMAWSVSFYPQVIQNWRRKSVIGLSFDFLALNLTGFVAYSVFNIGLLW 182 Query: 313 SPFIQKQYHDKFGDKEMIPVAANDVAFSLHAVALTSFTLYQVFIYERGQQKVSKVCISIT 492 P+IQ+++ K+ + PV +ND FSLHAVALT + Q +YERG Q+VS I Sbjct: 183 VPYIQEEFLLKY-PNGVNPVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFL 241 Query: 493 AVVWSAAIVCLIVA 534 + W +V +IVA Sbjct: 242 VLAWLFVLVTMIVA 255
>CTNS_CAEEL (Q09500) Cystinosin homolog| Length = 404 Score = 116 bits (290), Expect = 5e-26 Identities = 55/125 (44%), Positives = 78/125 (62%) Frame = +1 Query: 133 LGVLYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFLVLNFTKHSSYLIYNAALFF 312 L +L Q++GW FFAWS SFYPQ+ LN++RKSVVGLNFDFL LN +Y I+N +++ Sbjct: 125 LAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSLNLVGFCAYAIFNLLMYY 184 Query: 313 SPFIQKQYHDKFGDKEMIPVAANDVAFSLHAVALTSFTLYQVFIYERGQQKVSKVCISIT 492 + ++ +Y + + PV NDV F++HA T+ Q YER Q VS CI++ Sbjct: 185 NSHVKNEY-NIVNPRSPPPVLLNDVVFAVHAFLACFITILQCLFYERDNQSVSSKCIALM 243 Query: 493 AVVWS 507 V+ S Sbjct: 244 IVLIS 248 Score = 30.4 bits (67), Expect = 3.9 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 190 FYPQVVLNYRRKSVVGLNFDFLVLNFT 270 ++PQ NY RKS VG + ++L+FT Sbjct: 283 YFPQAYFNYTRKSTVGWSIGNIMLDFT 309
>CTNS_DROME (Q9VCR7) Cystinosin homolog| Length = 397 Score = 114 bits (284), Expect = 3e-25 Identities = 57/123 (46%), Positives = 75/123 (60%) Frame = +1 Query: 151 VIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFLVLNFTKHSSYLIYNAALFFSPFIQK 330 + GWV F AWS SFYPQ+ NYRRKSV GLNFDFL LN + Y ++N L+F +Q Sbjct: 134 IFGWVYFVAWSVSFYPQIWSNYRRKSVEGLNFDFLALNIVGFTLYSMFNCGLYFIEDLQN 193 Query: 331 QYHDKFGDKEMIPVAANDVAFSLHAVALTSFTLYQVFIYERGQQKVSKVCISITAVVWSA 510 +Y ++ + PV NDV FSLHA+ T T+ Q F Y+R QQ+VS + I A+ Sbjct: 194 EYEVRY-PLGVNPVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAIFAVV 252 Query: 511 AIV 519 +V Sbjct: 253 VVV 255 Score = 30.8 bits (68), Expect = 3.0 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 9/49 (18%) Frame = +1 Query: 151 VIGWVAFFAWS---------FSFYPQVVLNYRRKSVVGLNFDFLVLNFT 270 VI W+ F + + PQ ++NYRRKS G + ++L+FT Sbjct: 264 VIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTSGWSIGNILLDFT 312
>ERS1_YEAST (P17261) Transmembrane protein ERS1 (ERD suppressor)| Length = 260 Score = 44.7 bits (104), Expect = 2e-04 Identities = 30/99 (30%), Positives = 48/99 (48%) Frame = +1 Query: 142 LYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFLVLNFTKHSSYLIYNAALFFSPF 321 L ++G V +WS S YP ++ N+R KS ++ DF++LN T SYL+ ++F + Sbjct: 4 LDDILGIVYVTSWSISMYPPIITNWRHKSASAISMDFVMLN-TAGYSYLV--ISIFLQLY 60 Query: 322 IQKQYHDKFGDKEMIPVAANDVAFSLHAVALTSFTLYQV 438 K D+ D + D + LH + L QV Sbjct: 61 CWKMTGDE-SDLGRPKLTQFDFWYCLHGCLMNVVLLTQV 98
>YBZ7_YEAST (P38279) Hypothetical 33.5 kDa protein in MRPS9-YSW1 intergenic| region Length = 296 Score = 37.0 bits (84), Expect = 0.042 Identities = 16/48 (33%), Positives = 32/48 (66%) Frame = +1 Query: 148 QVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFLVLNFTKHSSYLI 291 Q++G+++ + S PQ+VLN++RKS G++F F + ++S++I Sbjct: 209 QILGYLSAILYLGSRIPQIVLNFKRKSCEGVSFLFFLFACLGNTSFII 256 Score = 32.3 bits (72), Expect = 1.0 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +1 Query: 157 GWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFLVL 261 G ++ W F PQ+ N+RR+S GL+ F+VL Sbjct: 18 GSISICCWIVVFVPQIYENFRRQSAEGLSLLFIVL 52
>YO092_YEAST (Q12010) Uncharacterized protein YOL092W| Length = 308 Score = 35.8 bits (81), Expect = 0.093 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Frame = +1 Query: 88 TPPPPAMSSSWNSVGLGV--LYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFLVL 261 T PPP S L + + Q+ G+++ + S PQ++LN++RKS G++F F + Sbjct: 191 TQPPPVEDPSLPVPELQINWMAQIFGYLSALLYLGSRIPQILLNFKRKSCEGISFLFFLF 250 Query: 262 NFTKHSSYL 288 +++++ Sbjct: 251 ACLGNTTFI 259 Score = 30.4 bits (67), Expect = 3.9 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +1 Query: 151 VIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFLVL 261 + G ++ W F PQ+ N+ RKS GL+ F+VL Sbjct: 16 ISGSISISCWIIVFVPQIYENFYRKSSDGLSLLFVVL 52
>MDR_PLAFF (P13568) Multidrug resistance protein (EC 3.6.3.44) (Chloroquine| resistance protein) Length = 1419 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = +1 Query: 193 YPQVVLNYRRKSVVGLNFDFLVLNFTKHSSYLIYNA-ALFFSPFIQKQYHDKFGDK 357 YP L Y R +F L N K+S Y++ A A+F S ++ Y++K G+K Sbjct: 803 YPVFALLYARYVSTLFDFANLEYNSNKYSIYILLIAIAMFISETLKNYYNNKIGEK 858
>POLG_TMEVD (P13899) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2301 Score = 30.4 bits (67), Expect = 3.9 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 12/91 (13%) Frame = +1 Query: 82 DRTPPPP-AMSSSWNSV-GLGVLYQVIGWVAFFA------WSFSFYPQVVLNYRRKSVVG 237 D P P M ++W + G Y+ FFA W ++ YP +LN R + V Sbjct: 291 DMEPTDPFTMDTTWRAPQGAPTGYRYDSRTGFFAMNHQNQWQWTVYPHQILNLRTNTTVD 350 Query: 238 LNFDFLVL----NFTKHSSYLIYNAALFFSP 318 L ++ + ++T+H+++ + A FSP Sbjct: 351 LEVPYVNIAPTSSWTQHANWTLVVAV--FSP 379
>POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2303 Score = 30.4 bits (67), Expect = 3.9 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 11/81 (13%) Frame = +1 Query: 97 PPAMSSSWNSV-GLGVLYQVIGWVAFFA------WSFSFYPQVVLNYRRKSVVGLNFDFL 255 P M + W S G Y+ FFA W ++ YP +LN R + V L ++ Sbjct: 297 PFTMDTEWRSPQGAPTGYRYDSRTGFFATNHQNQWQWTVYPHQILNLRTNTTVDLEVPYV 356 Query: 256 VL----NFTKHSSYLIYNAAL 306 + ++T+H+++ + A L Sbjct: 357 NVAPSSSWTQHANWTLVVAVL 377
>KR73_ICHV1 (Q00094) Gene 73 protein kinase (EC 2.7.11.1)| Length = 962 Score = 30.0 bits (66), Expect = 5.1 Identities = 11/32 (34%), Positives = 21/32 (65%) Frame = -1 Query: 294 VYEVGRVLCEIQHQKIEVQTHDTLAPVVEDDL 199 VY+VG + C++QH ++ + ++ VVE+ L Sbjct: 315 VYKVGNLACKVQHGRVMPGVSNAISDVVEESL 346
>YD03_SCHPO (Q10227) Hypothetical protein C2E12.03c in chromosome I| Length = 283 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +1 Query: 142 LYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFLVLNFTKHSSYLIYN 297 ++ ++G V W PQ++ NYR KS GL+ F++ +YN Sbjct: 21 VFAILGTVC---WCVQLIPQIIKNYRAKSTEGLDTLFILSWVVASIPLSVYN 69
>YMP0_YEAST (Q03687) Hypothetical 46.9 kDa protein in PLB1-HXT2 intergenic| region Length = 405 Score = 29.6 bits (65), Expect = 6.7 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Frame = +1 Query: 115 SWNSVGLGVLYQVIGWVAFFAWSFSFYPQVVLNYRRKSVVGLNFDFLV---LNFTKHSSY 285 +W+S+ G L +IG + S PQ+ + Y+ KSV G LV T +Y Sbjct: 244 NWDSLAQG-LGSIIGSLGLLVESLLPLPQIAILYKLKSVQGFKLILLVSWLCGDTLKITY 302 Query: 286 LIYNAALFFSPFI 324 LI+ A + F+ Sbjct: 303 LIFGAKNISALFV 315 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,381,257 Number of Sequences: 219361 Number of extensions: 1318765 Number of successful extensions: 3342 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3259 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3338 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
