Clone Information

BLAST Search Result

Clone Name	bart44d01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog ...	222	5e-58
2	PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog	209	6e-54
3	PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase ...	196	5e-50
4	PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-bindi...	195	8e-50
5	PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)...	195	8e-50
6	PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)...	188	1e-47
7	PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog	187	2e-47
8	PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog	176	4e-44
9	PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog ...	172	6e-43
10	PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog ...	168	1e-41
11	PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B	162	8e-40
12	PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog	137	2e-32
13	PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteaso...	72	1e-12
14	PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (T...	71	2e-12
15	PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (P...	71	2e-12
16	PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteaso...	71	2e-12
17	PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteaso...	71	2e-12
18	PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Pro...	70	4e-12
19	PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (P...	70	4e-12
20	PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (P...	70	4e-12
21	PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (P...	70	4e-12
22	PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4	69	1e-11
23	PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteaso...	68	2e-11
24	PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)	68	2e-11
25	PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteaso...	67	3e-11
26	PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteaso...	67	3e-11
27	PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (T...	65	2e-10
28	PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteaso...	64	2e-10
29	PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteaso...	64	2e-10
30	PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteaso...	64	3e-10
31	PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteaso...	60	4e-09
32	PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteaso...	59	9e-09
33	PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteaso...	57	3e-08
34	PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteaso...	53	7e-07
35	PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Prote...	50	6e-06
36	PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Prote...	50	6e-06
37	PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Prote...	50	6e-06
38	PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S1...	49	1e-05
39	PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteaso...	48	2e-05
40	PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease sub...	45	2e-04
41	PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4	43	7e-04
42	PRS8_SCHPO (P41836) 26S protease regulatory subunit 8 homolog (P...	40	0.003
43	PRS8_NAEFO (Q25544) 26S protease regulatory subunit 8 homolog (T...	38	0.017
44	PRS8_XENLA (P46470) 26S protease regulatory subunit 8 (SUG1 homo...	36	0.064
45	PRS8_RAT (P62198) 26S protease regulatory subunit 8 (Proteasome ...	36	0.084
46	PRS8_PIG (P62197) 26S protease regulatory subunit 8 (Proteasome ...	36	0.084
47	PRS8_MOUSE (P62196) 26S protease regulatory subunit 8 (Proteasom...	36	0.084
48	PRS8_HUMAN (P62195) 26S protease regulatory subunit 8 (Proteasom...	36	0.084
49	PRS8_BOVIN (P62194) 26S protease regulatory subunit 8 (Proteasom...	36	0.084
50	PRS8_DROME (O18413) 26S protease regulatory subunit 8	33	0.42
51	CE290_HUMAN (O15078) Centrosomal protein Cep290	32	1.2
52	LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase...	31	2.7
53	CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centroso...	31	2.7
54	MFP1_TOBAC (Q9M7J4) MAR binding filament-like protein 1-1	31	2.7
55	MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structura...	30	3.5
56	CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-...	30	3.5
57	LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1....	30	3.5
58	LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1....	30	3.5
59	CING_HUMAN (Q9P2M7) Cingulin	30	3.5
60	FOSL1_HUMAN (P15407) Fos-related antigen 1 (FRA-1)	30	4.6
61	PRS8_MANSE (P54814) 26S protease regulatory subunit 8 (18-56 pro...	30	6.0
62	RAD50_ARCFU (O29230) DNA double-strand break repair rad50 ATPase	30	6.0
63	PFDB_HALMA (Q5V1L3) Prefoldin beta subunit (GimC beta subunit)	30	6.0
64	CE290_BOVIN (Q9TU23) Centrosomal protein Cep290	29	7.9
65	SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like...	29	7.9
66	HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13...	29	7.9

>PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog (26S proteasome|
           AAA-ATPase subunit RPT3) (Regulatory particle triple-A
           ATPase subunit 3)
          Length = 408

 Score =  222 bits (566), Expect = 5e-58
 Identities = 113/123 (91%), Positives = 119/123 (96%)
 Frame = +2

Query: 188 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 367
           D++DLYGRLKSL+R +EF +IQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM
Sbjct: 26  DEEDLYGRLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 85

Query: 368 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 547
           VD NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL+
Sbjct: 86  VDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLS 145

Query: 548 SSE 556
            SE
Sbjct: 146 QSE 148

to top

>PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog|
          Length = 413

 Score =  209 bits (531), Expect = 6e-54
 Identities = 107/124 (86%), Positives = 114/124 (91%)
 Frame = +2

Query: 185 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 364
           + +DDLY RLKSLQR +EF+EIQEEYVKDE KNL+RE LRAQEEVKRIQSVPLVIGQFME
Sbjct: 30  DGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFME 89

Query: 365 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
           M+D NN IVGSTTGSNYYVRILSTINRELLKPSASV L RHSNALVDVLPPEADSSISLL
Sbjct: 90  MIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLL 149

Query: 545 ASSE 556
           + SE
Sbjct: 150 SQSE 153

to top

>PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase MS73)|
          Length = 415

 Score =  196 bits (497), Expect = 5e-50
 Identities = 97/123 (78%), Positives = 111/123 (90%)
 Frame = +2

Query: 188 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 367
           + +DLY + K LQR +EF+E+QEEY+KDEQ+NLK+E L AQEEVKRIQSVPLVIGQF+E 
Sbjct: 33  ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 92

Query: 368 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 547
           VD N GIVGSTTGSNYYVRILSTI+RELLKPSASVALH+HSNALVDVLPPEADSSIS+L 
Sbjct: 93  VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 152

Query: 548 SSE 556
           + E
Sbjct: 153 ADE 155

to top

>PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-binding protein 7)|
           (TBP-7)
          Length = 418

 Score =  195 bits (495), Expect = 8e-50
 Identities = 96/124 (77%), Positives = 110/124 (88%)
 Frame = +2

Query: 185 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 364
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 365 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
            VD N  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDVLPPEADSSI +L
Sbjct: 95  AVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMML 154

Query: 545 ASSE 556
            S +
Sbjct: 155 TSDQ 158

to top

>PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7)
          Length = 418

 Score =  195 bits (495), Expect = 8e-50
 Identities = 96/124 (77%), Positives = 110/124 (88%)
 Frame = +2

Query: 185 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 364
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 365 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
            VD N  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDVLPPEADSSI +L
Sbjct: 95  AVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMML 154

Query: 545 ASSE 556
            S +
Sbjct: 155 TSDQ 158

to top

>PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7) (CIP21)
          Length = 418

 Score =  188 bits (477), Expect = 1e-47
 Identities = 92/124 (74%), Positives = 108/124 (87%)
 Frame = +2

Query: 185 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 364
           ED +DLY R K LQ+ +EF+E+QEEY+KDEQKNLK+E L AQEEVKRIQS+PLVIGQF+E
Sbjct: 35  EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLE 94

Query: 365 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
            VD N  IV STTGSNYYVR++STI+RELLKP+ASVALH+HSNALVDVLPP ADSSI +L
Sbjct: 95  AVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMML 154

Query: 545 ASSE 556
            S +
Sbjct: 155 TSDQ 158

to top

>PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog|
          Length = 423

 Score =  187 bits (474), Expect = 2e-47
 Identities = 90/123 (73%), Positives = 109/123 (88%)
 Frame = +2

Query: 188 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 367
           D  D Y  LK LQRH+E++++QEEY+KDEQ++LKREL+RAQEE+KRIQSVPLVIGQFME 
Sbjct: 37  DGSDEYATLKRLQRHLEYIQLQEEYIKDEQRSLKRELVRAQEEIKRIQSVPLVIGQFMEA 96

Query: 368 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 547
           +D N GIV S+TGSNY VRILST++RE LKPS+SVALHRHSNALVD+LPPEADSSI++L 
Sbjct: 97  IDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLG 156

Query: 548 SSE 556
            +E
Sbjct: 157 ENE 159

to top

>PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog|
          Length = 389

 Score =  176 bits (446), Expect = 4e-44
 Identities = 87/123 (70%), Positives = 107/123 (86%)
 Frame = +2

Query: 188 DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 367
           ++ DLY R K+L+R +E +++QE ++K++ K+LKREL+RAQEEVKRIQSVPLVIGQF+E 
Sbjct: 5   EEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64

Query: 368 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLA 547
           +D N  IVGSTTGSNY VRILST++RELLKPSASVAL RHSNALVD+LPPEADSSIS+L 
Sbjct: 65  IDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLR 124

Query: 548 SSE 556
             E
Sbjct: 125 PDE 127

to top

>PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog (YNT1 protein)|
           (TAT-binding homolog 2)
          Length = 428

 Score =  172 bits (436), Expect = 6e-43
 Identities = 83/122 (68%), Positives = 105/122 (86%)
 Frame = +2

Query: 191 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 370
           + D+Y +LK L++  E + +QE+Y+KDEQ++LKREL RAQEEVKRIQSVPLVIGQF+E +
Sbjct: 44  NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPI 103

Query: 371 DGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLAS 550
           D N GIV STTG +Y VRILST++RELLKPS SVALHRHSNALVD+LPP++DSSIS++  
Sbjct: 104 DQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGE 163

Query: 551 SE 556
           +E
Sbjct: 164 NE 165

to top

>PRS6B_DICDI (P34123) 26S protease regulatory subunit 6B homolog (TAT-binding|
           protein homolog 2)
          Length = 403

 Score =  168 bits (425), Expect = 1e-41
 Identities = 87/120 (72%), Positives = 100/120 (83%)
 Frame = +2

Query: 197 DLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG 376
           DLY ++KSL+  ++F  IQEEY+K E KNLKRELL AQEEVKRI+SVPL+IGQ +EMVD 
Sbjct: 24  DLYQKMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEEVKRIRSVPLLIGQLLEMVDS 83

Query: 377 NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSE 556
           N GIV ST+GS   VRILSTI+RELLKPSASVAL RHSNALVD LPPE+DSSI LL + E
Sbjct: 84  NTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADE 143

to top

>PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B|
          Length = 414

 Score =  162 bits (409), Expect = 8e-40
 Identities = 80/120 (66%), Positives = 100/120 (83%)
 Frame = +2

Query: 197 DLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG 376
           D Y +L +L+R +  +++ E+Y+K E +NL++ELL AQEEVKRIQSVPLVIGQF+E VD 
Sbjct: 35  DDYIKLTTLERQLAHLQVMEDYIKLETRNLEKELLHAQEEVKRIQSVPLVIGQFLEAVDQ 94

Query: 377 NNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSE 556
           N+ IVGSTTGSNYYVR+LS ++RELLKP  SVALH++SNALVDVLPPEADSSI +L   E
Sbjct: 95  NHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDE 154

to top

>PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog|
          Length = 387

 Score =  137 bits (345), Expect = 2e-32
 Identities = 65/119 (54%), Positives = 93/119 (78%)
 Frame = +2

Query: 200 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 379
           L+ R K ++R +  +EI+E YV+ E + LKRE   ++EE+ R++SVPL++GQF+E +D +
Sbjct: 9   LFVRYKQMERKLRLLEIREGYVRKEIETLKREERHSREELDRVKSVPLIMGQFLEPIDSS 68

Query: 380 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSE 556
             IVGST GSN+ VRILST++RELLKP+ +VALHRHS+A+V VLPPE DS+I ++  SE
Sbjct: 69  TAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESE 127

to top

>PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 397

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 37/105 (35%), Positives = 63/105 (60%)
 Frame = +2

Query: 221 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 400
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D    IV + 
Sbjct: 20  LKRRIRQLELQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNY 79

Query: 401 TGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSI 535
            G  + VRI   I R+ LKP A VAL + + A+V++LP E D S+
Sbjct: 80  NGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSV 124

to top

>PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (TAT-binding|
           homolog 5)
          Length = 437

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 37/114 (32%), Positives = 72/114 (63%), Gaps = 2/114 (1%)
 Frame = +2

Query: 209 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 382
           +L  ++R  + + ++EE+V + +  K  +++    +++++ I+  PL IG   E++D ++
Sbjct: 58  KLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDH 117

Query: 383 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
            IV S T  +YYV ILS +++ELL+P  SV LH  + ++V VL  +AD  +S++
Sbjct: 118 AIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVM 171

to top

>PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (Protein mts2)|
          Length = 448

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 39/115 (33%), Positives = 73/115 (63%), Gaps = 3/115 (2%)
 Frame = +2

Query: 209 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSV---PLVIGQFMEMVDGN 379
           RL  +QR  + + ++EEYV+++++ LK +  R QEE  R+  +   P+ +G   E++D +
Sbjct: 68  RLLKMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDD 126

Query: 380 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
           + IV ST G  YYV I+S +++++L+P  SV LH  + ++V +L  + D  I+++
Sbjct: 127 HAIV-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVM 180

to top

>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 37/111 (33%), Positives = 68/111 (61%)
 Frame = +2

Query: 203 YGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 382
           Y +L+ L R +E    ++++++ E+   +RE+ R + EV+R++S PL++G   ++++   
Sbjct: 20  YYKLRELYRRLED---EKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGR 76

Query: 383 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSI 535
            +V S+TG  + V     IN E LKP A VAL++ + A+V+VLP   D  +
Sbjct: 77  VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMV 127

to top

>PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 436

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 35/116 (30%), Positives = 70/116 (60%)
 Frame = +2

Query: 209 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGI 388
           R K+L++ +E    ++  +++E +  +  + + + +++R++  PL++G   E++D    I
Sbjct: 57  RRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVI 116

Query: 389 VGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLASSE 556
           V S+TG  +   +  T++R  L+P A+VAL++ S A+VDVLP E DS +  +   E
Sbjct: 117 VKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDE 172

to top

>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 32/114 (28%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
 Frame = +2

Query: 209 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 382
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 383 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
            IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVM 174

to top

>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 32/114 (28%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
 Frame = +2

Query: 209 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 382
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 383 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
            IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVM 174

to top

>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 32/114 (28%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
 Frame = +2

Query: 209 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 382
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 383 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
            IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVM 174

to top

>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 32/114 (28%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
 Frame = +2

Query: 209 RLKSLQRHMEFVEIQEEYVKDEQ--KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNN 382
           +L  L+R  +++ ++EE++++++  K L+ +    + +V  ++  P+ +G   E++D N+
Sbjct: 61  KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH 120

Query: 383 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
            IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++
Sbjct: 121 AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVM 174

to top

>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4|
          Length = 443

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 35/117 (29%), Positives = 74/117 (63%), Gaps = 5/117 (4%)
 Frame = +2

Query: 209 RLKSL--QRHMEFVEIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVD 373
           RLK L  +R  +++ +++E+++++++ LK +  R +EE   V  ++  P+ +G   E++D
Sbjct: 62  RLKLLKSERIKDYLLMEQEFIQNQER-LKPQEERQEEERAKVDELRGTPMAVGSLEEIID 120

Query: 374 GNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
             + IV +  GS +YV I+S +++E L+P  SV L+  ++A++ VL  + D  +S++
Sbjct: 121 DQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVM 177

to top

>PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 33/105 (31%), Positives = 63/105 (60%)
 Frame = +2

Query: 221 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 400
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV + 
Sbjct: 22  LKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNY 81

Query: 401 TGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSI 535
            G  + VRI   I R+ L+P A VAL + + A++++LP   D ++
Sbjct: 82  NGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTV 126

to top

>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)|
          Length = 439

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 33/115 (28%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
 Frame = +2

Query: 209 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDGN 379
           +L  L+R  +++ +++E+++++++ LK +  + +EE   V  ++  P+ +G   E++D N
Sbjct: 60  KLLKLERIKDYLMMEDEFIRNQER-LKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDN 118

Query: 380 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
           + IV ++ GS +YV ILS ++++ L+P  SV L+   +A+V VL  + D  ++++
Sbjct: 119 HAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVM 173

to top

>PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 33/105 (31%), Positives = 63/105 (60%)
 Frame = +2

Query: 221 LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGST 400
           L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G  +E++D +  IV + 
Sbjct: 22  LKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNY 81

Query: 401 TGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSI 535
            G  + VRI   I+R+ L+P   VAL + + A+V++LP   D ++
Sbjct: 82  NGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTV 126

to top

>PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 396

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
 Frame = +2

Query: 185 EDDDDLYGRLKS----LQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG 352
           ED+   +G        L+R +  +E+Q   ++ +++ L+REL R + E+ R++  P   G
Sbjct: 3   EDEAQFHGNYDDYVTYLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAG 62

Query: 353 QFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSS 532
             +E++D +  IV +  G  + VRI   I++  L+P   VAL + + A++++LP   D +
Sbjct: 63  SVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPA 122

Query: 533 I 535
           +
Sbjct: 123 V 123

to top

>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding|
           protein homolog 2)
          Length = 448

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 32/114 (28%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
 Frame = +2

Query: 209 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQE--EVKRIQSVPLVIGQFMEMVDGNN 382
           RL  L+R  +++ ++EE+V  +++    E    ++  +V  ++  P+ +G   E++D ++
Sbjct: 69  RLLKLERVKDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESH 128

Query: 383 GIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
            IV S+ G  YYV ILS ++++ L+P  S+ +H    ++V +L  E D  +S++
Sbjct: 129 AIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVM 182

to top

>PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 420

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 30/115 (26%), Positives = 67/115 (58%)
 Frame = +2

Query: 200 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 379
           L  R   L+     +E ++ Y+++++   +RE+ + Q E+ R+++ PL+IG  ++++  +
Sbjct: 34  LESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKND 93

Query: 380 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
             IV S+ G  + V +   I+ + L P A VAL++H+ A+ +V+P   +  ++ +
Sbjct: 94  RIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAM 148

to top

>PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 421

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 30/115 (26%), Positives = 67/115 (58%)
 Frame = +2

Query: 200 LYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 379
           L  R   L+     +E ++ Y+++++   +RE+ + Q E+ R+++ PL+IG  ++++  +
Sbjct: 34  LESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKND 93

Query: 380 NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
             IV S+ G  + V +   I+ + L P A VAL++H+ A+ +V+P   +  ++ +
Sbjct: 94  RIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAM 148

to top

>PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 410

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 34/108 (31%), Positives = 65/108 (60%)
 Frame = +2

Query: 215 KSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVG 394
           ++L   +  +E  +  +++E+  L RE+   + E++R ++ PLVI    E++D +   V 
Sbjct: 31  RNLMWKIRKLEKDKLLIENERTRLDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVK 90

Query: 395 STTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSIS 538
           STTG ++ +     I+R+ L+P A VAL++ + ++VDVLP E D  ++
Sbjct: 91  STTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVT 138

to top

>PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 393

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 32/107 (29%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
 Frame = +2

Query: 233 MEFVEIQEEYVKDEQ---KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTT 403
           ++ V + EE +K  Q   +NL++EL   + E++++ S PL+    ++++     +V S++
Sbjct: 17  VQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSS 76

Query: 404 GSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
           G N  V I S I+++L+KP  SVAL++  + +++VLP + D  +  +
Sbjct: 77  GPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTM 123

to top

>PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 409

 Score = 58.9 bits (141), Expect = 9e-09
 Identities = 30/95 (31%), Positives = 53/95 (55%)
 Frame = +2

Query: 272 EQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINREL 451
           E+ +L++EL   + E+ ++ S P +    +E++D N  +V S+TG N  V + + ++   
Sbjct: 38  EKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARS 97

Query: 452 LKPSASVALHRHSNALVDVLPPEADSSISLLASSE 556
           LKP A VAL+   + +VDVLP   D  +  +   E
Sbjct: 98  LKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEE 132

to top

>PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 407

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 31/114 (27%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
 Frame = +2

Query: 212 LKSLQRHMEFVEIQEEYVKDEQKN---------LKRELLRAQEEVKRIQSVPLVIGQFME 364
           LK  +   +  E++ + ++ E KN         +K+E    + E+ +++  PL++G  ++
Sbjct: 18  LKEFKEKTQIAELESKVLRLELKNKDINRENVQIKKENEILKRELDKLRIPPLILGTILD 77

Query: 365 MVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEAD 526
            V+    +V S+TG N+ V +   ++ E + P A V L++ + A+V+VLP E D
Sbjct: 78  KVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKD 131

to top

>PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 430

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 28/106 (26%), Positives = 58/106 (54%)
 Frame = +2

Query: 209 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGI 388
           R+  L+  +  +E++++ ++ E   L +E    + E+ R++  PL++G  ++ V     +
Sbjct: 48  RIAELESRILKLELEKKELERENLQLMKENEILRRELDRMRVPPLIVGTVVDKVGERKVV 107

Query: 389 VGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEAD 526
           V S+TG ++ V +   +N + L P   V L++ +  +VDVLP   D
Sbjct: 108 VKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKD 153

to top

>PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6) (Conserved ATPase
           domain protein 44) (CADp44)
          Length = 389

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 29/112 (25%), Positives = 58/112 (51%)
 Frame = +2

Query: 191 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 370
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 371 DGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEAD 526
                IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D
Sbjct: 65  TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 116

to top

>PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 29/112 (25%), Positives = 58/112 (51%)
 Frame = +2

Query: 191 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 370
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 371 DGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEAD 526
                IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D
Sbjct: 65  TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 116

to top

>PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 29/112 (25%), Positives = 58/112 (51%)
 Frame = +2

Query: 191 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 370
           D  L    K L  H E ++ + + ++++ K L ++  +++ ++K +QSV  ++G+ ++ +
Sbjct: 6   DKALQDYRKKLLEHKE-IDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQL 64

Query: 371 DGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEAD 526
                IV +T G  Y V     +++  LKP   VAL   +  ++  LP E D
Sbjct: 65  TEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVD 116

to top

>PRS10_CAEEL (O17071) Probable 26S protease regulatory subunit S10B (Proteasome|
           regulatory particle ATPase-like protein 4)
          Length = 406

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
 Frame = +2

Query: 191 DDDLYGRLKSLQRHMEFVEIQEEYVKDEQKN---LKRELLRAQEEVKRIQSVPLVIGQFM 361
           +D+    L S +R +      E+ +KD +K    + ++  +++ ++K +QSV  ++G+ +
Sbjct: 19  EDERTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVL 78

Query: 362 EMVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEAD 526
           + +     IV +T G  Y V    +IN+E LK    V+L   +  ++  LP E D
Sbjct: 79  KQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVD 133

to top

>PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 392

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
 Frame = +2

Query: 188 DDDDLYGRLKSLQRHMEFVEIQEEYVKD---EQKNLKRELLRAQEEVKRIQSVPLVIGQF 358
           D+ D Y R K        V + EE ++    E + L+++L   + E++++ + P +    
Sbjct: 3   DELDSY-RAKHYNSDDPIVRLLEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIV 61

Query: 359 MEMVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSI 535
           ++++     IV S++G N  V + S I+ + LKP + VAL +  + +V+VLP   D+ +
Sbjct: 62  LDILPDGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYV 120

to top

>PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease subunit SUG2)|
           (Proteasomal cap subunit)
          Length = 437

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 23/93 (24%), Positives = 51/93 (54%)
 Frame = +2

Query: 278 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLK 457
           ++L++   + + ++K +QS+  +IG+ M+ +     IV +++G  Y V + ++++R  LK
Sbjct: 82  RDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLK 141

Query: 458 PSASVALHRHSNALVDVLPPEADSSISLLASSE 556
               V L   +  ++ +LP E D  +  + S E
Sbjct: 142 KGVRVTLDITTLTIMRILPRETDPLVYNMTSFE 174

to top

>PRS10_SCHPO (O74445) Probable 26S protease subunit rpt4|
          Length = 388

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 20/83 (24%), Positives = 47/83 (56%)
 Frame = +2

Query: 278 KNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLK 457
           ++L ++  + ++++K +QSV  +IG+ ++ +D    IV +++G  Y V   + +++  L 
Sbjct: 33  RDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLV 92

Query: 458 PSASVALHRHSNALVDVLPPEAD 526
               V+L   +  ++ +LP E D
Sbjct: 93  QGVRVSLDMTTLTIMRILPREVD 115

to top

>PRS8_SCHPO (P41836) 26S protease regulatory subunit 8 homolog (Protein let1)|
          Length = 403

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 26/88 (29%), Positives = 45/88 (51%)
 Frame = +2

Query: 281 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLKP 460
           N +  LLR  EE++ +Q     +G+ ++ +  N  +V       Y V I   I+ + +KP
Sbjct: 49  NARVRLLR--EEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKP 106

Query: 461 SASVALHRHSNALVDVLPPEADSSISLL 544
           +  VAL   S  L+ +LP + D  +SL+
Sbjct: 107 NIRVALRNDSYQLIKILPNKVDPLVSLM 134

to top

>PRS8_NAEFO (Q25544) 26S protease regulatory subunit 8 homolog (TAT-binding|
           protein homolog)
          Length = 414

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
 Frame = +2

Query: 242 VEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEMVDGNNG 385
           ++ +E  ++D+ +NL+R  L+AQ            EE++++Q     +G+ ++++     
Sbjct: 35  IQEKEIVLRDKIENLRR--LQAQRNELNGRVRSLKEELQQLQEPGSHVGEVVKVMGKKKV 92

Query: 386 IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
           ++  +    Y V I  +I  + L P   VAL   S AL  +LP + D  +SL+
Sbjct: 93  LIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLM 145

to top

>PRS8_XENLA (P46470) 26S protease regulatory subunit 8 (SUG1 homolog) (xSUG1)|
          Length = 461

 Score = 36.2 bits (82), Expect = 0.064
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
 Frame = +2

Query: 194 DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSV 337
           D+  G     Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q  
Sbjct: 7   DESRGGTGLRQYYLSKIEDLQLVVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQ 64

Query: 338 PLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPP 517
              +G+ +  +D    +V       + V +   I+   + P+  VAL   S  L  +LP 
Sbjct: 65  GSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPN 124

Query: 518 EADSSISLL 544
           + D  +SL+
Sbjct: 125 KVDPLVSLM 133

to top

>PRS8_RAT (P62198) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid
           hormone receptor-interacting protein 1) (TRIP1)
          Length = 406

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
 Frame = +2

Query: 224 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 367
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 368 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLM 138

to top

>PRS8_PIG (P62197) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (TAT-binding
           protein homolog 10) (TBP10)
          Length = 406

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
 Frame = +2

Query: 224 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 367
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 368 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLM 138

to top

>PRS8_MOUSE (P62196) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (mSUG1)
          Length = 406

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
 Frame = +2

Query: 224 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 367
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 368 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLM 138

to top

>PRS8_HUMAN (P62195) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid
           hormone receptor-interacting protein 1) (TRIP1)
          Length = 406

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
 Frame = +2

Query: 224 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 367
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 368 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLM 138

to top

>PRS8_BOVIN (P62194) 26S protease regulatory subunit 8 (Proteasome subunit p45)|
           (p45/SUG) (Proteasome 26S subunit ATPase 5)
          Length = 406

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
 Frame = +2

Query: 224 QRHMEFVEIQEEYVKDEQKNLKRELLRAQ------------EEVKRIQSVPLVIGQFMEM 367
           Q ++  +E  +  V D+ +NL+R  L+AQ            EE++ +Q     +G+ +  
Sbjct: 22  QYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 368 VDGNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
           +D    +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+
Sbjct: 80  MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLM 138

to top

>PRS8_DROME (O18413) 26S protease regulatory subunit 8|
          Length = 405

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 25/107 (23%), Positives = 49/107 (45%)
 Frame = +2

Query: 224 QRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTT 403
           ++H     +Q +     + N K  +LR  EE++ +Q     +G+ ++ +D    +V    
Sbjct: 36  EKHQNLRRLQAQR---NELNAKVRMLR--EELQLLQEQGSYVGEVVKPMDKKKVLVKVHP 90

Query: 404 GSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLL 544
              + V +   I+   + P+  VAL   S  L  +LP + D  +SL+
Sbjct: 91  EGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLM 137

to top

>CE290_HUMAN (O15078) Centrosomal protein Cep290|
          Length = 1539

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 12/37 (32%), Positives = 26/37 (70%)
 Frame = +2

Query: 188  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 298
            D D L  ++K L+  ++  +++++++K+E K LK+EL
Sbjct: 1437 DADQLKEKIKDLETQLKMSDLEKQHLKEEIKKLKKEL 1473

to top

>LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein-binding protein 1)
           (PTPRF-interacting protein-binding protein 1) (hSGT2)
          Length = 1011

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = +2

Query: 209 RLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQS--VPLVIGQFMEMVD 373
           ++  +Q   + +E + E +KDE  +LK +L   + EVKR+Q   V  + G+ +E+VD
Sbjct: 244 KVGQMQYEKQRMEQKWESLKDELASLKEQLEEKESEVKRLQEKLVCKMKGEGVEIVD 300

to top

>CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centrosome-associated|
            protein of 350 kDa)
          Length = 3117

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +2

Query: 188  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEE--VKRIQS 334
            D  D+ GR+++L+  +   +     +K EQK  ++E L+AQE   +K+++S
Sbjct: 2046 DQSDIEGRIRALKDELRKRKSVVNQLKKEQKKRQKERLKAQEASLIKQLES 2096

to top

>MFP1_TOBAC (Q9M7J4) MAR binding filament-like protein 1-1|
          Length = 722

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +2

Query: 218 SLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGN 379
           +L++ + F+E Q    K+ +KNL+ EL RA E +  +      + + +E+ + +
Sbjct: 556 TLEKELTFLEAQITREKESRKNLEEELERATESLDEMNRNAFALAKELELANSH 609

to top

>MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structural maintenance of|
            chromosome-related protein)
          Length = 1499

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +2

Query: 194  DDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKR 325
            D+L+ +L + ++   FVE Q   ++ E +NL R + +A+ + K+
Sbjct: 1090 DELHHQLSTSRQRRSFVEKQLTLIESEAENLTRRIRKAERDYKQ 1133

to top

>CAF1A_MOUSE (Q9QWF0) Chromatin assembly factor 1 subunit A (CAF-1 subunit A)|
           (Chromatin assembly factor I p150 subunit) (CAF-I 150
           kDa subunit) (CAF-Ip150)
          Length = 911

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +2

Query: 215 KSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFME 364
           K  Q  +E  +++E+  K+E+K L+ E  R +EE KRI++    I +F +
Sbjct: 381 KERQEALE-AKLEEKRKKEEEKRLREEEKRLREEEKRIKAEKAEITRFFQ 429

to top

>LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine|
           oxidase flavin-containing domain protein 2) (BRAF35-HDAC
           complex protein BHC110)
          Length = 852

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 11/29 (37%), Positives = 23/29 (79%)
 Frame = +2

Query: 242 VEIQEEYVKDEQKNLKRELLRAQEEVKRI 328
           +++QE++VKDEQ    +++++ QEE+K +
Sbjct: 416 IQLQEKHVKDEQIEHWKKIVKTQEELKEL 444

to top

>LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine|
           oxidase flavin-containing domain protein 2) (AOF2
           protein) (BRAF35-HDAC complex protein BHC110)
          Length = 853

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 11/29 (37%), Positives = 23/29 (79%)
 Frame = +2

Query: 242 VEIQEEYVKDEQKNLKRELLRAQEEVKRI 328
           +++QE++VKDEQ    +++++ QEE+K +
Sbjct: 417 IQLQEKHVKDEQIEHWKKIVKTQEELKEL 445

to top

>CING_HUMAN (Q9P2M7) Cingulin|
          Length = 1197

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +2

Query: 185 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQS 334
           E +++L  +++ LQR +E         +  +  LK+ELLR QEE+K +Q+
Sbjct: 592 EMEEELGEKIEVLQRELEQARASAGDTRQVEV-LKKELLRTQEELKELQA 640

to top

>FOSL1_HUMAN (P15407) Fos-related antigen 1 (FRA-1)|
          Length = 271

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +2

Query: 236 EFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDG-NNGIVGSTTGSN 412
           +F++ + + ++DE+  L+RE+   Q++ +R++ V        ++ +G   G  GST+G++
Sbjct: 131 DFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKEGDTGSTSGTS 190

to top

>PRS8_MANSE (P54814) 26S protease regulatory subunit 8 (18-56 protein)|
          Length = 402

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 21/88 (23%), Positives = 41/88 (46%)
 Frame = +2

Query: 281 NLKRELLRAQEEVKRIQSVPLVIGQFMEMVDGNNGIVGSTTGSNYYVRILSTINRELLKP 460
           N K  +LR  EE++ +Q     +G+ ++ +D    +V       + V +   ++   +  
Sbjct: 49  NAKVRMLR--EELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTA 106

Query: 461 SASVALHRHSNALVDVLPPEADSSISLL 544
           +  VAL   S  L  +LP + D  +SL+
Sbjct: 107 NCRVALRNESYTLHKILPNKVDPLVSLM 134

to top

>RAD50_ARCFU (O29230) DNA double-strand break repair rad50 ATPase|
          Length = 886

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 224 QRHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSV 337
           +R  EF+  QEE +K +++  K E+ R  EE+K I+S+
Sbjct: 173 ERLKEFLS-QEEQIKRQKEEKKAEIERISEEIKSIESL 209

to top

>PFDB_HALMA (Q5V1L3) Prefoldin beta subunit (GimC beta subunit)|
          Length = 129

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 185 EDDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 298
           E  DDL  ++ SL+  +E +E QEE V+++ + L+ EL
Sbjct: 71  EAQDDLEEKVNSLEVRVETLEKQEERVQEQFEELQSEL 108

to top

>CE290_BOVIN (Q9TU23) Centrosomal protein Cep290|
          Length = 1453

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +2

Query: 188  DDDDLYGRLKSLQRHMEFVEIQEEYVKDEQKNLKREL 298
            D D L  ++K L+  +   +++++++K+E + LK+EL
Sbjct: 1351 DPDHLMEKIKDLETQLRTSDMEKQHLKEEIQKLKKEL 1387

to top

>SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like 1 protein|
            (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C
            homolog)
          Length = 1288

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
 Frame = +2

Query: 194  DDLYGRLKSLQ-------RHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG 352
            DDL   LKSL+       ++    E     ++ E +NL +EL   QE    +Q   L I 
Sbjct: 956  DDLTAELKSLEDKAAEVVKNTNAAEESLPEIQKEHRNLLQELKVIQENEHALQKDALSIK 1015

Query: 353  QFMEMVDGN 379
              +E +DG+
Sbjct: 1016 LKLEQIDGH 1024

to top

>HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)|
           (4HPPD) (HPD) (HPPDase) (T-cell reactive protein)
          Length = 399

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +2

Query: 227 RHMEFVEIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVI 349
           R  EF+++ E Y +D +  LKR+ L   E+ + ++S+ ++I
Sbjct: 301 RGTEFIKVPETYYEDMKIRLKRQGLVLDEDFETLKSLDILI 341


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,686,348
Number of Sequences: 219361
Number of extensions: 435092
Number of successful extensions: 2765
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 2628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2762
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result