ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart43c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY968588.1| Triticum aestivum ice recrystallization inhibitio... 270 4e-69
2gb|AY968589.1| Triticum aestivum ice recrystallization inhibitio... 115 1e-22
3gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 46 0.11
4gb|AC148151.3| Monodelphis domestica clone VMRC6-414K6, complete... 44 0.45
5gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 44 0.45
6gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
7gb|AC108758.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
8gb|AC135240.2| Mus musculus BAC clone RP24-63O24 from chromosome... 42 1.8
9gb|AC140420.4| Mus musculus BAC clone RP24-440F22 from chromosom... 42 1.8
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
13dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
14dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
15dbj|AK067558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
16emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4,... 42 1.8
17ref|XM_479471.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.0
18gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.0
19ref|XM_570056.1| Cryptococcus neoformans var. neoformans JEC21 g... 40 7.0
20ref|XM_570057.1| Cryptococcus neoformans var. neoformans JEC21 g... 40 7.0
21ref|XM_854283.1| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
22ref|XM_854249.1| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
23ref|XM_854214.1| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
24ref|XM_854174.1| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
25ref|XM_854132.1| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
26ref|XM_854093.1| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
27ref|XM_854057.1| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
28ref|XM_853980.1| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
29ref|XM_532073.2| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
30ref|XM_853910.1| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
31ref|XM_853872.1| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
32ref|XM_853829.1| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
33ref|XM_853794.1| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
34ref|XM_853683.1| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
35ref|XM_844336.1| PREDICTED: Canis familiaris similar to BAT3, tr... 40 7.0
36gb|AC136729.7| Mus musculus chromosome 3, clone RP23-175I24, com... 40 7.0
37emb|BX842596.1| Neurospora crassa DNA linkage group II BAC clone... 40 7.0
38gb|AE012182.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 7.0
39gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 7.0
40dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
41gb|AC126412.21| Mus musculus chromosome 3, clone RP24-267M22, co... 40 7.0
42gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 7.0
43dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
44dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
45dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
46emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chr... 40 7.0
47emb|AL627259.8| Mouse DNA sequence from clone RP23-399H3 on chro... 40 7.0 
>gb|AY968588.1| Triticum aestivum ice recrystallization inhibition protein 1
           precursor, mRNA, complete cds
          Length = 1079

 Score =  270 bits (136), Expect = 4e-69
 Identities = 355/428 (82%)
 Strand = Plus / Plus

                                                                       
Query: 86  gaatccatggcgaaatactggatgctgctccacttcttggcggtcctcttgcccgcggcg 145
           |||||||||||||||| | || |||||||||  ||||||||| |||||||||| ||||| 
Sbjct: 83  gaatccatggcgaaatgcgggctgctgctcctgttcttggcgttcctcttgccggcggca 142

                                                                       
Query: 146 agcgccacgtcatgccacgtcgacgacctccgcgcgctgagggactttgccgggaacctc 205
            | || ||||| ||||||  ||| |||||||| |||||  ||| ||| ||||| ||||||
Sbjct: 143 cgtgcaacgtcgtgccaccccgatgacctccgtgcgctacggggcttcgccggaaacctc 202

                                                                       
Query: 206 agtggtgatggcgtcctcctccgcgccgtgtggtccggcacctcgtgctgcggctgggaa 265
           || ||||  |  | ||||||||| || |  ||||||||  |||| ||||||| |||||||
Sbjct: 203 agcggtggggctgccctcctccgtgctgcctggtccggtgcctcctgctgcgtctgggaa 262

                                                                       
Query: 266 ggtgtgggctgcgacggcaaaagtggacgcgtcacgacgttgcggcttcccggtcgtggc 325
           || |||  |||||| ||||  || || || |||||| || ||||||| || || |  |||
Sbjct: 263 ggcgtgaactgcgatggcactagcggccgtgtcacggcgctgcggctccctgggcacggc 322

                                                                       
Query: 326 cttgcggggcgcatcccaggagcatcgttggcgggcctggcatggcttcaggagctcaac 385
           || | ||||| ||||||||||||||| ||||| ||||| ||| ||||  |||||||||||
Sbjct: 323 ctcgtggggctcatcccaggagcatccttggcaggccttgcacggctagaggagctcaac 382

                                                                       
Query: 386 cttgccagcaacagactggtcggcaccatcccatcgtggattggtgagcttgaccacctt 445
           ||||||| ||||| ||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct: 383 cttgccaacaacaaactggtcggcaccatcccatcatggattggcgagcttgatcacctt 442

                                                                       
Query: 446 tgcgacttggatctctccggtaattcactggatggggaggtacccaagagtttgatacgg 505
           ||| |||||||||| || | ||||||| ||| ||| ||||||||||||||||||||||||
Sbjct: 443 tgctacttggatctgtcggataattcattggttggcgaggtacccaagagtttgatacgg 502

                   
Query: 506 cttaaggg 513
           || |||||
Sbjct: 503 ctcaaggg 510
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>gb|AY968589.1| Triticum aestivum ice recrystallization inhibition protein 2
           precursor, mRNA, complete cds
          Length = 1596

 Score =  115 bits (58), Expect = 1e-22
 Identities = 121/142 (85%)
 Strand = Plus / Plus

                                                                       
Query: 379 gctcaaccttgccagcaacagactggtcggcaccatcccatcgtggattggtgagcttga 438
           ||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 744 gctcagccttgccaacaacagattggtcggcaccatcccgtcgtggattggtgagcttga 803

                                                                       
Query: 439 ccacctttgcgacttggatctctccggtaattcactggatggggaggtacccaagagttt 498
           |||||||  | |||||||||||||   ||||||| ||  |||  ||||||| ||||||| 
Sbjct: 804 ccaccttcactacttggatctctcaaataattcaatgattggcaaggtaccgaagagttc 863

                                 
Query: 499 gatacggcttaagggccacgcc 520
           || ||| || ||||||| ||||
Sbjct: 864 gacacgactcaagggcctcgcc 885



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 153/189 (80%), Gaps = 5/189 (2%)
 Strand = Plus / Plus

                                                                       
Query: 90  ccatggcgaaatactggatgctgctccacttcttggcggtcctcttgcccgcggcgagcg 149
           |||||||||||| |||| |||||||   || ||||||| | |||||||| ||||| ||||
Sbjct: 20  ccatggcgaaatcctggctgctgctgttctgcttggcgtttctcttgccggcggcaagcg 79

                                                                       
Query: 150 ccacgtcatgccacgtcgacgacctccgcgcgctgagggactttgccgggaacctcagtg 209
           | ||||   |||||  ||||||||| || |||||| ||| ||| ||||| ||||| || |
Sbjct: 80  cgacgt---gccaccccgacgacctacgtgcgctgcggggcttggccgg-aaccttaggg 135

                                                                       
Query: 210 gtgatggcgt-cctcctccgcgccgtgtggtccggcacctcgtgctgcggctgggaaggt 268
           | | |||||  || ||||| |  ||||||||| ||| ||||||||||||  |||||||||
Sbjct: 136 gcggtggcgcgccacctccacagcgtgtggtctggcgcctcgtgctgcgattgggaaggt 195

                    
Query: 269 gtgggctgc 277
           |||||||||
Sbjct: 196 gtgggctgc 204
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 138    ccgcggcgagcgccacgtcatgc 160
              |||||||||||||||||||||||
Sbjct: 600124 ccgcggcgagcgccacgtcatgc 600146
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>gb|AC148151.3| Monodelphis domestica clone VMRC6-414K6, complete sequence
          Length = 158302

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 252   gctgcggctgggaaggtgtggg 273
             ||||||||||||||||||||||
Sbjct: 40503 gctgcggctgggaaggtgtggg 40482
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 252   gctgcggctgggaaggtgtggg 273
             ||||||||||||||||||||||
Sbjct: 40503 gctgcggctgggaaggtgtggg 40482
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>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07,
              complete sequence
          Length = 154528

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 166    cgacgacctccgcgcgctgag 186
              |||||||||||||||||||||
Sbjct: 137510 cgacgacctccgcgcgctgag 137530
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>gb|AC108758.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBa0066E19, complete sequence
          Length = 145575

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 166    cgacgacctccgcgcgctgag 186
              |||||||||||||||||||||
Sbjct: 131841 cgacgacctccgcgcgctgag 131821
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>gb|AC135240.2| Mus musculus BAC clone RP24-63O24 from chromosome 5, complete sequence
          Length = 196371

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 360   gcctggcatggcttcaggagc 380
             |||||||||||||||||||||
Sbjct: 48369 gcctggcatggcttcaggagc 48389
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>gb|AC140420.4| Mus musculus BAC clone RP24-440F22 from chromosome 5, complete sequence
          Length = 157377

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 360   gcctggcatggcttcaggagc 380
             |||||||||||||||||||||
Sbjct: 23170 gcctggcatggcttcaggagc 23150
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 251     tgctgcggctgggaaggtgtgggctgcgacggc 283
               ||||||||||||||||| |||| ||||| ||||
Sbjct: 1147931 tgctgcggctgggaaggcgtggtctgcggcggc 1147963
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 166      cgacgacctccgcgcgctgag 186
                |||||||||||||||||||||
Sbjct: 18733389 cgacgacctccgcgcgctgag 18733369
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 146      agcgccacgtcatgccacgtc 166
                |||||||||||||||||||||
Sbjct: 26154998 agcgccacgtcatgccacgtc 26154978



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 159     gccacgtcgacgacctccgcgcgct 183
               ||||| |||||||||||||||||||
Sbjct: 8924378 gccacttcgacgacctccgcgcgct 8924402



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 165      tcgacgacctccgcgcgctg 184
                ||||||||||||||||||||
Sbjct: 14212476 tcgacgacctccgcgcgctg 14212457
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>dbj|AP003340.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1316_H05
          Length = 105346

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 146   agcgccacgtcatgccacgtc 166
             |||||||||||||||||||||
Sbjct: 60415 agcgccacgtcatgccacgtc 60395
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>dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0453A06
          Length = 154378

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 159   gccacgtcgacgacctccgcgcgct 183
             ||||| |||||||||||||||||||
Sbjct: 32133 gccacttcgacgacctccgcgcgct 32157
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>dbj|AK067558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112K04, full
           insert sequence
          Length = 2553

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 251 tgctgcggctgggaaggtgtgggctgcgacggc 283
           ||||||||||||||||| |||| ||||| ||||
Sbjct: 204 tgctgcggctgggaaggcgtggtctgcggcggc 236
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>emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020P07,
             complete sequence
          Length = 167895

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 251   tgctgcggctgggaaggtgtgggctgcgacggc 283
             ||||||||||||||||| |||| ||||| ||||
Sbjct: 90313 tgctgcggctgggaaggcgtggtctgcggcggc 90345
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>ref|XM_479471.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1425

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 tggcgtcctcctccgcgccg 233
           ||||||||||||||||||||
Sbjct: 547 tggcgtcctcctccgcgccg 528
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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
               sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     gacgacctccgcgcgctgag 186
               ||||||||||||||||||||
Sbjct: 1422066 gacgacctccgcgcgctgag 1422047
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>ref|XM_570056.1| Cryptococcus neoformans var. neoformans JEC21 guanine nucleotide
           exchange factor (CND05200) partial mRNA
          Length = 4731

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 gacgacctccgcgcgctgag 186
           ||||||||||||||||||||
Sbjct: 253 gacgacctccgcgcgctgag 272
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>ref|XM_570057.1| Cryptococcus neoformans var. neoformans JEC21 guanine nucleotide
           exchange factor (CND05200) partial mRNA
          Length = 4617

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 gacgacctccgcgcgctgag 186
           ||||||||||||||||||||
Sbjct: 253 gacgacctccgcgcgctgag 272
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>ref|XM_854283.1| PREDICTED: Canis familiaris similar to BAT3, transcript variant 18
            (BAT3), mRNA
          Length = 3842

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2206 ggcgggcctggcatggcttc 2225
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>ref|XM_854249.1| PREDICTED: Canis familiaris similar to BAT3, transcript variant 17
            (BAT3), mRNA
          Length = 3772

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2136 ggcgggcctggcatggcttc 2155
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>ref|XM_854214.1| PREDICTED: Canis familiaris similar to BAT3, transcript variant 16
            (BAT3), mRNA
          Length = 3745

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2109 ggcgggcctggcatggcttc 2128
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>ref|XM_854174.1| PREDICTED: Canis familiaris similar to BAT3, transcript variant 15
            (BAT3), mRNA
          Length = 3768

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2132 ggcgggcctggcatggcttc 2151
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>ref|XM_854132.1| PREDICTED: Canis familiaris similar to BAT3, transcript variant 14
            (BAT3), mRNA
          Length = 3762

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2126 ggcgggcctggcatggcttc 2145
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>ref|XM_854093.1| PREDICTED: Canis familiaris similar to BAT3, transcript variant 13
            (BAT3), mRNA
          Length = 3675

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2192 ggcgggcctggcatggcttc 2211
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>ref|XM_854057.1| PREDICTED: Canis familiaris similar to BAT3, transcript variant 12
            (BAT3), mRNA
          Length = 3567

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2084 ggcgggcctggcatggcttc 2103
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>ref|XM_853980.1| PREDICTED: Canis familiaris similar to BAT3, transcript variant 10
            (BAT3), mRNA
          Length = 3814

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2192 ggcgggcctggcatggcttc 2211
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>ref|XM_532073.2| PREDICTED: Canis familiaris similar to BAT3, transcript variant 1
            (BAT3), mRNA
          Length = 3670

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2192 ggcgggcctggcatggcttc 2211
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>ref|XM_853910.1| PREDICTED: Canis familiaris similar to BAT3, transcript variant 9
            (BAT3), mRNA
          Length = 3559

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2081 ggcgggcctggcatggcttc 2100
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>ref|XM_853872.1| PREDICTED: Canis familiaris similar to BAT3, transcript variant 8
            (BAT3), mRNA
          Length = 3517

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2192 ggcgggcctggcatggcttc 2211
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>ref|XM_853829.1| PREDICTED: Canis familiaris similar to BAT3, transcript variant 7
            (BAT3), mRNA
          Length = 3396

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2192 ggcgggcctggcatggcttc 2211
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>ref|XM_853794.1| PREDICTED: Canis familiaris similar to BAT3, transcript variant 6
            (BAT3), mRNA
          Length = 3409

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2084 ggcgggcctggcatggcttc 2103
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>ref|XM_853683.1| PREDICTED: Canis familiaris similar to BAT3, transcript variant 3
            (BAT3), mRNA
          Length = 3732

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2096 ggcgggcctggcatggcttc 2115
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>ref|XM_844336.1| PREDICTED: Canis familiaris similar to BAT3, transcript variant 2
            (BAT3), mRNA
          Length = 3828

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  ggcgggcctggcatggcttc 374
            ||||||||||||||||||||
Sbjct: 2192 ggcgggcctggcatggcttc 2211
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>gb|AC136729.7| Mus musculus chromosome 3, clone RP23-175I24, complete sequence
          Length = 216602

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   aaccttgccagcaacagact 402
             ||||||||||||||||||||
Sbjct: 27009 aaccttgccagcaacagact 27028
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>emb|BX842596.1| Neurospora crassa DNA linkage group II BAC clone B10K17
          Length = 77292

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   gtgctgcggctgggaaggtg 269
             ||||||||||||||||||||
Sbjct: 12222 gtgctgcggctgggaaggtg 12241
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>gb|AE012182.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 90 of
            460 of the complete genome
          Length = 11418

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  ggtccggcacctcgtgctgc 256
            ||||||||||||||||||||
Sbjct: 1835 ggtccggcacctcgtgctgc 1854
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 237     ggtccggcacctcgtgctgc 256
               ||||||||||||||||||||
Sbjct: 4057967 ggtccggcacctcgtgctgc 4057948
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 214      tggcgtcctcctccgcgccg 233
                ||||||||||||||||||||
Sbjct: 28387331 tggcgtcctcctccgcgccg 28387350
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>gb|AC126412.21| Mus musculus chromosome 3, clone RP24-267M22, complete sequence
          Length = 177266

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 383  aaccttgccagcaacagact 402
            ||||||||||||||||||||
Sbjct: 1549 aaccttgccagcaacagact 1530
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 89      tccatggcgaaatactggat 108
               ||||||||||||||||||||
Sbjct: 1095536 tccatggcgaaatactggat 1095555
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>dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1102E12
          Length = 155692

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    tcgacgacctccgcgcgctg 184
              ||||||||||||||||||||
Sbjct: 152190 tcgacgacctccgcgcgctg 152171
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>dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0458A05
          Length = 120593

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  tcgacgacctccgcgcgctg 184
            ||||||||||||||||||||
Sbjct: 8166 tcgacgacctccgcgcgctg 8147
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>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0470D12
          Length = 157248

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    tggcgtcctcctccgcgccg 233
              ||||||||||||||||||||
Sbjct: 112894 tggcgtcctcctccgcgccg 112913
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>emb|CT571256.7| Mouse DNA sequence from clone RP24-135B13 on chromosome 13, complete
              sequence
          Length = 183340

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     atagcatacttccatagaat 89
              ||||||||||||||||||||
Sbjct: 108957 atagcatacttccatagaat 108976
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>emb|AL627259.8| Mouse DNA sequence from clone RP23-399H3 on chromosome 4, complete
            sequence
          Length = 176063

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  ctggatgctgctccacttct 122
            ||||||||||||||||||||
Sbjct: 5646 ctggatgctgctccacttct 5665


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,153,155
Number of Sequences: 3902068
Number of extensions: 3153155
Number of successful extensions: 54247
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53940
Number of HSP's gapped (non-prelim): 306
length of query: 520
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 497
effective length of database: 17,143,297,704
effective search space: 8520218958888
effective search space used: 8520218958888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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