Clone Information

BLAST Search Result

Clone Name	bart43a05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	180	4e-42
2	dbj\|AP006860.2\| Oryza sativa (japonica cultivar-group) genomic D...	180	4e-42
3	dbj\|AP005761.2\| Oryza sativa (japonica cultivar-group) genomic D...	180	4e-42
4	dbj\|AK068835.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	180	4e-42
5	ref\|XM_476807.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.53
6	gb\|CP000133.1\| Rhizobium etli CFN 42, complete genome	44	0.53
7	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.53
8	dbj\|AP003843.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.53
9	gb\|U81860.1\|HSCOAS10 Human 3-hydroxy-3-methylglutaryl CoA syntha...	42	2.1
10	ref\|NM_005518.2\| Homo sapiens 3-hydroxy-3-methylglutaryl-Coenzym...	42	2.1
11	emb\|X60379.1\|SEERYABIO S.erythraea erythromycin A biosynthesis g...	42	2.1
12	emb\|AL589734.5\| Human DNA sequence from clone RP4-683H9 on chrom...	42	2.1
13	emb\|X83618.1\|HSHMGCOAS H.sapiens mRNA for 3-hydroxy-3-methylglut...	42	2.1
14	gb\|BC044217.1\| Homo sapiens 3-hydroxy-3-methylglutaryl-Coenzyme ...	42	2.1
15	emb\|CR618114.1\| full-length cDNA clone CS0DM011YI02 of Fetal liv...	42	2.1
16	gb\|AC123912.1\| Homo sapiens chromosome 19 clone RP11-678G14, com...	42	2.1
17	gb\|AC146756.17\| Medicago truncatula clone mth2-15l17, complete s...	42	2.1
18	dbj\|AP001204.1\| Rhodococcus equi plasmid pREAT701 DNA, complete ...	42	2.1
19	gb\|AC093326.3\| Homo sapiens BAC clone RP11-625N16 from 2, comple...	42	2.1
20	gb\|M54983.1\|SERERYFGH Saccharopolyspora erythraea EryF (eryF) ge...	42	2.1
21	gb\|AC115062.13\| Mus musculus chromosome 3, clone RP24-399B3, com...	42	2.1
22	gb\|U12789.1\|HSU12789 Human clone HSH1 HMG CoA synthase mRNA, par...	42	2.1
23	gb\|CP000151.1\| Burkholderia sp. 383 chromosome 1, complete sequence	40	8.3
24	gb\|AC091263.15\| Mus musculus chromosome 9, clone RP23-134F1, com...	40	8.3
25	ref\|XM_418618.1\| PREDICTED: Gallus gallus similar to Macrophage ...	40	8.3
26	gb\|AC022682.16\| Mus musculus chromosome 13, clone RP23-476E21, c...	40	8.3
27	gb\|BC030342.1\| Mus musculus cDNA clone IMAGE:3667878, with appar...	40	8.3
28	emb\|CT009661.10\| Mouse DNA sequence from clone CH29-621D18 on ch...	40	8.3
29	gb\|AC126252.3\| Mus musculus BAC clone RP23-480B9 from chromosome...	40	8.3
30	ref\|XM_848163.1\| PREDICTED: Canis familiaris similar to Histone ...	40	8.3
31	gb\|AC158995.2\| Mus musculus BAC clone RP24-81K2 from chromosome ...	40	8.3
32	emb\|AL355336.15\| Human DNA sequence from clone RP11-405O10 on ch...	40	8.3
33	emb\|AL939127.1\|SCO939127 Streptomyces coelicolor A3(2) complete ...	40	8.3
34	emb\|AL591430.8\| Mouse DNA sequence from clone RP23-41B20 on chro...	40	8.3
35	dbj\|AK127740.1\| Homo sapiens cDNA FLJ45840 fis, clone NTONG2004829	40	8.3
36	gb\|AF026202.1\| Caenorhabditis elegans cosmid C10E2, complete seq...	40	8.3
37	gb\|AC163760.3\| Pan troglodytes BAC clone CH251-180O13 from chrom...	40	8.3
38	dbj\|AK053735.1\| Mus musculus 0 day neonate eyeball cDNA, RIKEN f...	40	8.3
39	gb\|AC154003.4\| Mus musculus 6 BAC RP24-92L16 (Roswell Park Cance...	40	8.3
40	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	8.3
41	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	40	8.3
42	dbj\|AP006619.1\| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, c...	40	8.3
43	gb\|AE005121.1\| Halobacterium sp. NRC-1 section 152 of 170 of the...	40	8.3
44	emb\|AL772186.11\| Mouse DNA sequence from clone RP23-281K3 on chr...	40	8.3
45	emb\|CT573326.1\| Pseudomonas entomophila str. L48 chromosome,comp...	40	8.3
46	gb\|CP000159.1\| Salinibacter ruber DSM 13855, complete genome	40	8.3
47	gb\|AC170998.2\| Mus musculus BAC clone RP24-137E7 from chromosome...	40	8.3

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  180 bits (91), Expect = 4e-42
 Identities = 127/139 (91%)
 Strand = Plus / Plus

                                                                            
Query: 270      cgccgacgacgtgtacgtggcggtgggcaagggcgggtccagcatggcggcgctgtcgtg 329
                ||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct: 10528626 cgccgccgacgtgtacgtggcggtggggaagggcgggtcaagcatggaggcgctgtcgtg 10528685

                                                                            
Query: 330      ggcgctgcggcggctcgcgaggccgcggagcttcgtctaccttgtgcacgtcttccccgt 389
                ||||||||||||||| ||   ||||||||||||||||||||| |||||||||||||||||
Sbjct: 10528686 ggcgctgcggcggctggcctcgccgcggagcttcgtctacctcgtgcacgtcttccccgt 10528745

                                   
Query: 390      cgtcgccaccatccccacc 408
                ||||  || ||||||||||
Sbjct: 10528746 cgtcatcagcatccccacc 10528764



 Score =  137 bits (69), Expect = 5e-29
 Identities = 108/121 (89%)
 Strand = Plus / Plus

                                                                            
Query: 413      taggaatgatgcctaagagacaagcaacgccagagcaggtagaaacttacatgaaccaag 472
                ||||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||
Sbjct: 10531897 taggaatgatgcccaagagccaagcaagcccagagcaggtagaaacttacatgaaccaag 10531956

                                                                            
Query: 473      agagatccaagaggcgagagatgctgcaaaaatttctggaccactgtcgcaactttcagg 532
                ||||||| |||||||| | |||||| ||||||| | | ||||| || |||||||||||||
Sbjct: 10531957 agagatcaaagaggcgtgtgatgctacaaaaatatttagaccattgccgcaactttcagg 10532016

                 
Query: 533      t 533
                |
Sbjct: 10532017 t 10532017



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                        
Query: 527      ttcaggttaatgtcgatgtgtacctcatcgagagtgatca 566
                ||||||||||||| |||||||||||||||||||| |||||
Sbjct: 10532119 ttcaggttaatgttgatgtgtacctcatcgagagcgatca 10532158



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 180      cagcacgtgggagatagaggagctggag 207
                ||||||||||||||| |||||| |||||
Sbjct: 10528554 cagcacgtgggagatcgaggagatggag 10528581

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>dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1026E06
          Length = 162784

 Score =  180 bits (91), Expect = 4e-42
 Identities = 127/139 (91%)
 Strand = Plus / Plus

                                                                          
Query: 270    cgccgacgacgtgtacgtggcggtgggcaagggcgggtccagcatggcggcgctgtcgtg 329
              ||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct: 105240 cgccgccgacgtgtacgtggcggtggggaagggcgggtcaagcatggaggcgctgtcgtg 105299

                                                                          
Query: 330    ggcgctgcggcggctcgcgaggccgcggagcttcgtctaccttgtgcacgtcttccccgt 389
              ||||||||||||||| ||   ||||||||||||||||||||| |||||||||||||||||
Sbjct: 105300 ggcgctgcggcggctggcctcgccgcggagcttcgtctacctcgtgcacgtcttccccgt 105359

                                 
Query: 390    cgtcgccaccatccccacc 408
              ||||  || ||||||||||
Sbjct: 105360 cgtcatcagcatccccacc 105378



 Score =  137 bits (69), Expect = 5e-29
 Identities = 108/121 (89%)
 Strand = Plus / Plus

                                                                          
Query: 413    taggaatgatgcctaagagacaagcaacgccagagcaggtagaaacttacatgaaccaag 472
              ||||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||
Sbjct: 108511 taggaatgatgcccaagagccaagcaagcccagagcaggtagaaacttacatgaaccaag 108570

                                                                          
Query: 473    agagatccaagaggcgagagatgctgcaaaaatttctggaccactgtcgcaactttcagg 532
              ||||||| |||||||| | |||||| ||||||| | | ||||| || |||||||||||||
Sbjct: 108571 agagatcaaagaggcgtgtgatgctacaaaaatatttagaccattgccgcaactttcagg 108630

               
Query: 533    t 533
              |
Sbjct: 108631 t 108631



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                      
Query: 527    ttcaggttaatgtcgatgtgtacctcatcgagagtgatca 566
              ||||||||||||| |||||||||||||||||||| |||||
Sbjct: 108733 ttcaggttaatgttgatgtgtacctcatcgagagcgatca 108772



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 180    cagcacgtgggagatagaggagctggag 207
              ||||||||||||||| |||||| |||||
Sbjct: 105168 cagcacgtgggagatcgaggagatggag 105195

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>dbj|AP005761.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1066D09
          Length = 183999

 Score =  180 bits (91), Expect = 4e-42
 Identities = 127/139 (91%)
 Strand = Plus / Plus

                                                                         
Query: 270   cgccgacgacgtgtacgtggcggtgggcaagggcgggtccagcatggcggcgctgtcgtg 329
             ||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct: 65333 cgccgccgacgtgtacgtggcggtggggaagggcgggtcaagcatggaggcgctgtcgtg 65392

                                                                         
Query: 330   ggcgctgcggcggctcgcgaggccgcggagcttcgtctaccttgtgcacgtcttccccgt 389
             ||||||||||||||| ||   ||||||||||||||||||||| |||||||||||||||||
Sbjct: 65393 ggcgctgcggcggctggcctcgccgcggagcttcgtctacctcgtgcacgtcttccccgt 65452

                                
Query: 390   cgtcgccaccatccccacc 408
             ||||  || ||||||||||
Sbjct: 65453 cgtcatcagcatccccacc 65471



 Score =  137 bits (69), Expect = 5e-29
 Identities = 108/121 (89%)
 Strand = Plus / Plus

                                                                         
Query: 413   taggaatgatgcctaagagacaagcaacgccagagcaggtagaaacttacatgaaccaag 472
             ||||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||
Sbjct: 68604 taggaatgatgcccaagagccaagcaagcccagagcaggtagaaacttacatgaaccaag 68663

                                                                         
Query: 473   agagatccaagaggcgagagatgctgcaaaaatttctggaccactgtcgcaactttcagg 532
             ||||||| |||||||| | |||||| ||||||| | | ||||| || |||||||||||||
Sbjct: 68664 agagatcaaagaggcgtgtgatgctacaaaaatatttagaccattgccgcaactttcagg 68723

              
Query: 533   t 533
             |
Sbjct: 68724 t 68724



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                     
Query: 527   ttcaggttaatgtcgatgtgtacctcatcgagagtgatca 566
             ||||||||||||| |||||||||||||||||||| |||||
Sbjct: 68826 ttcaggttaatgttgatgtgtacctcatcgagagcgatca 68865



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 180   cagcacgtgggagatagaggagctggag 207
             ||||||||||||||| |||||| |||||
Sbjct: 65261 cagcacgtgggagatcgaggagatggag 65288

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>dbj|AK068835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158G20, full
           insert sequence
          Length = 2716

 Score =  180 bits (91), Expect = 4e-42
 Identities = 127/139 (91%)
 Strand = Plus / Plus

                                                                       
Query: 270 cgccgacgacgtgtacgtggcggtgggcaagggcgggtccagcatggcggcgctgtcgtg 329
           ||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct: 253 cgccgccgacgtgtacgtggcggtggggaagggcgggtcaagcatggaggcgctgtcgtg 312

                                                                       
Query: 330 ggcgctgcggcggctcgcgaggccgcggagcttcgtctaccttgtgcacgtcttccccgt 389
           ||||||||||||||| ||   ||||||||||||||||||||| |||||||||||||||||
Sbjct: 313 ggcgctgcggcggctggcctcgccgcggagcttcgtctacctcgtgcacgtcttccccgt 372

                              
Query: 390 cgtcgccaccatccccacc 408
           ||||  || ||||||||||
Sbjct: 373 cgtcatcagcatccccacc 391



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 180 cagcacgtgggagatagaggagctggag 207
           ||||||||||||||| |||||| |||||
Sbjct: 181 cagcacgtgggagatcgaggagatggag 208

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>ref|XM_476807.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2724

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 387 cgtcgtcgccaccatccccacc 408
           ||||||||||||||||||||||
Sbjct: 456 cgtcgtcgccaccatccccacc 477

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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 142     gacgacgacaccggcctgcacc 163
               ||||||||||||||||||||||
Sbjct: 4065944 gacgacgacaccggcctgcacc 4065965

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 387     cgtcgtcgccaccatccccacc 408
               ||||||||||||||||||||||
Sbjct: 4002997 cgtcgtcgccaccatccccacc 4003018

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>dbj|AP003843.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1656_E11
          Length = 116211

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 387    cgtcgtcgccaccatccccacc 408
              ||||||||||||||||||||||
Sbjct: 105723 cgtcgtcgccaccatccccacc 105744

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>gb|U81860.1|HSCOAS10 Human 3-hydroxy-3-methylglutaryl CoA synthase gene, exon 10
          Length = 470

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 5   cttctctccattgctccatct 25
           |||||||||||||||||||||
Sbjct: 288 cttctctccattgctccatct 268

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>ref|NM_005518.2| Homo sapiens 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
            (mitochondrial) (HMGCS2), mRNA
          Length = 2082

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 5    cttctctccattgctccatct 25
            |||||||||||||||||||||
Sbjct: 1845 cttctctccattgctccatct 1825

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>emb|X60379.1|SEERYABIO S.erythraea erythromycin A biosynthesis gene cluster encoding
            hydrolase; thioesterase; methylase
          Length = 4254

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 120  cggcgtggtcgacatcgtcga 140
            |||||||||||||||||||||
Sbjct: 1714 cggcgtggtcgacatcgtcga 1734

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>emb|AL589734.5| Human DNA sequence from clone RP4-683H9 on chromosome 1 Contains the 3'
             end of the PHGDH gene for phosphoglycerate dehydrogenase
             and the HMGCS2 gene for
             3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
             (mitochondrial), complete sequence
          Length = 65882

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 5     cttctctccattgctccatct 25
             |||||||||||||||||||||
Sbjct: 23891 cttctctccattgctccatct 23911

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>emb|X83618.1|HSHMGCOAS H.sapiens mRNA for 3-hydroxy-3-methylglutaryl coenzyme A synthase
          Length = 2058

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 5    cttctctccattgctccatct 25
            |||||||||||||||||||||
Sbjct: 1846 cttctctccattgctccatct 1826

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>gb|BC044217.1| Homo sapiens 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
            (mitochondrial), mRNA (cDNA clone MGC:49912
            IMAGE:5744956), complete cds
          Length = 2098

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 5    cttctctccattgctccatct 25
            |||||||||||||||||||||
Sbjct: 1835 cttctctccattgctccatct 1815

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>emb|CR618114.1| full-length cDNA clone CS0DM011YI02 of Fetal liver of Homo sapiens
            (human)
          Length = 1471

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 5    cttctctccattgctccatct 25
            |||||||||||||||||||||
Sbjct: 1301 cttctctccattgctccatct 1281

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>gb|AC123912.1| Homo sapiens chromosome 19 clone RP11-678G14, complete sequence
          Length = 103476

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 488   gagagatgctgcaaaaatttc 508
             |||||||||||||||||||||
Sbjct: 21572 gagagatgctgcaaaaatttc 21552

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>gb|AC146756.17| Medicago truncatula clone mth2-15l17, complete sequence
          Length = 120437

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 410   cattaggaatgatgcctaaga 430
             |||||||||||||||||||||
Sbjct: 59191 cattaggaatgatgcctaaga 59211

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>dbj|AP001204.1| Rhodococcus equi plasmid pREAT701 DNA, complete sequence
          Length = 80610

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 134   tcgtcgaggacgacgacaccg 154
             |||||||||||||||||||||
Sbjct: 45983 tcgtcgaggacgacgacaccg 45963

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>gb|AC093326.3| Homo sapiens BAC clone RP11-625N16 from 2, complete sequence
          Length = 188711

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 57     tcccatcagggaggccggcca 77
              |||||||||||||||||||||
Sbjct: 163468 tcccatcagggaggccggcca 163448

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>gb|M54983.1|SERERYFGH Saccharopolyspora erythraea EryF (eryF) gene, complete cds; EryG
           (eryG) gene, partial cds; and unknown gene
          Length = 2243

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 120 cggcgtggtcgacatcgtcga 140
           |||||||||||||||||||||
Sbjct: 562 cggcgtggtcgacatcgtcga 582

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>gb|AC115062.13| Mus musculus chromosome 3, clone RP24-399B3, complete sequence
          Length = 198727

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 465    gaaccaagagagatccaagag 485
              |||||||||||||||||||||
Sbjct: 103380 gaaccaagagagatccaagag 103400

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>gb|U12789.1|HSU12789 Human clone HSH1 HMG CoA synthase mRNA, partial cds
          Length = 1542

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 5    cttctctccattgctccatct 25
            |||||||||||||||||||||
Sbjct: 1360 cttctctccattgctccatct 1340

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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 320     cgctgtcgtgggcgctgcggcggc 343
               ||||||||||||||||||| ||||
Sbjct: 1246976 cgctgtcgtgggcgctgcgccggc 1246953

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>gb|AC091263.15| Mus musculus chromosome 9, clone RP23-134F1, complete sequence
          Length = 204289

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    gcggcggctcgcgaggccgc 355
              ||||||||||||||||||||
Sbjct: 172036 gcggcggctcgcgaggccgc 172055

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>ref|XM_418618.1| PREDICTED: Gallus gallus similar to Macrophage mannose receptor
           precursor (MMR) (CD206 antigen) (LOC420516), mRNA
          Length = 4381

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 233 ctcctcgcctttctccccgg 252
           ||||||||||||||||||||
Sbjct: 25  ctcctcgcctttctccccgg 44

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>gb|AC022682.16| Mus musculus chromosome 13, clone RP23-476E21, complete sequence
          Length = 183905

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   gggcgctgcggcggctcgcg 348
             ||||||||||||||||||||
Sbjct: 31375 gggcgctgcggcggctcgcg 31394

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>gb|BC030342.1| Mus musculus cDNA clone IMAGE:3667878, with apparent retained
           intron
          Length = 1991

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 336 gcggcggctcgcgaggccgc 355
           ||||||||||||||||||||
Sbjct: 13  gcggcggctcgcgaggccgc 32

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>emb|CT009661.10| Mouse DNA sequence from clone CH29-621D18 on chromosome 17, complete
             sequence
          Length = 224982

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   aggtagaaacttacatgaac 468
             ||||||||||||||||||||
Sbjct: 79560 aggtagaaacttacatgaac 79541

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>gb|AC126252.3| Mus musculus BAC clone RP23-480B9 from chromosome 17, complete
            sequence
          Length = 172380

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  aggtagaaacttacatgaac 468
            ||||||||||||||||||||
Sbjct: 6094 aggtagaaacttacatgaac 6113

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>ref|XM_848163.1| PREDICTED: Canis familiaris similar to Histone H2A.x (H2a/x)
           (LOC489372), mRNA
          Length = 841

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 232 cctcctcgcctttctccccgggca 255
           ||||||||||||| ||||||||||
Sbjct: 84  cctcctcgcctttttccccgggca 107

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>gb|AC158995.2| Mus musculus BAC clone RP24-81K2 from chromosome 9, complete sequence
          Length = 169799

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   gcggcggctcgcgaggccgc 355
             ||||||||||||||||||||
Sbjct: 55694 gcggcggctcgcgaggccgc 55713

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>emb|AL355336.15| Human DNA sequence from clone RP11-405O10 on chromosome 6 Contains the
             5' end of the RREB1 gene for ras responsive element
             binding protein 1, part of a novel gene and CpG islands,
             complete sequence
          Length = 169616

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   gggcgctgcggcggctcgcg 348
             ||||||||||||||||||||
Sbjct: 60691 gggcgctgcggcggctcgcg 60672

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>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    tcgtcgaggacgacgacacc 153
              ||||||||||||||||||||
Sbjct: 146227 tcgtcgaggacgacgacacc 146208

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>emb|AL591430.8| Mouse DNA sequence from clone RP23-41B20 on chromosome 2 Contains the
            5' end of the Cdh22 gene for cadherin 22, the Ovcov1 gene
            for ovarian cancer overexpressed 1, the Elmo2 gene for
            engulfment and cell motility 2, ced-12 homolog (C.
            elegans), the 3' end of a putative novel zinc finger
            protein and three CpG islands, complete sequence
          Length = 144243

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 15   ttgctccatctcacgcccac 34
            ||||||||||||||||||||
Sbjct: 8541 ttgctccatctcacgcccac 8560

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>dbj|AK127740.1| Homo sapiens cDNA FLJ45840 fis, clone NTONG2004829
          Length = 2952

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 gggcgctgcggcggctcgcg 348
           ||||||||||||||||||||
Sbjct: 326 gggcgctgcggcggctcgcg 345

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>gb|AF026202.1| Caenorhabditis elegans cosmid C10E2, complete sequence
          Length = 32480

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 526  tttcaggttaatgtcgatgt 545
            ||||||||||||||||||||
Sbjct: 6490 tttcaggttaatgtcgatgt 6509

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>gb|AC163760.3| Pan troglodytes BAC clone CH251-180O13 from chromosome unknown,
             complete sequence
          Length = 174147

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 582   cactgaacttatccctgttctgaa 605
             |||||||||| |||||||||||||
Sbjct: 37923 cactgaacttttccctgttctgaa 37946

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>dbj|AK053735.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130305F24 product:unclassifiable, full
           insert sequence
          Length = 2112

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 336 gcggcggctcgcgaggccgc 355
           ||||||||||||||||||||
Sbjct: 150 gcggcggctcgcgaggccgc 169

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>gb|AC154003.4| Mus musculus 6 BAC RP24-92L16 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 200703

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     tctctccattgctccatctc 26
             ||||||||||||||||||||
Sbjct: 79128 tctctccattgctccatctc 79147

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 95      ccgaggccgtccgggacgac 114
               ||||||||||||||||||||
Sbjct: 1789360 ccgaggccgtccgggacgac 1789341



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    tcgtcgaggacgacgacacc 153
              ||||||||||||||||||||
Sbjct: 156439 tcgtcgaggacgacgacacc 156458

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 387     cgtcgtcgccaccatcccca 406
               ||||||||||||||||||||
Sbjct: 3303330 cgtcgtcgccaccatcccca 3303311



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 387     cgtcgtcgccaccatcccca 406
               ||||||||||||||||||||
Sbjct: 3302492 cgtcgtcgccaccatcccca 3302473

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>dbj|AP006619.1| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, complete sequence
          Length = 184026

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   acgacaccggcctgcacccg 165
             ||||||||||||||||||||
Sbjct: 85847 acgacaccggcctgcacccg 85866

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>gb|AE005121.1| Halobacterium sp. NRC-1 section 152 of 170 of the complete genome
          Length = 10208

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 135  cgtcgaggacgacgacaccg 154
            ||||||||||||||||||||
Sbjct: 6371 cgtcgaggacgacgacaccg 6352

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>emb|AL772186.11| Mouse DNA sequence from clone RP23-281K3 on chromosome 4, complete
             sequence
          Length = 205714

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   cagcacgtgggagatagagg 199
             ||||||||||||||||||||
Sbjct: 53866 cagcacgtgggagatagagg 53885

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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    cggcgtggtcgacatcgtcg 139
              ||||||||||||||||||||
Sbjct: 474860 cggcgtggtcgacatcgtcg 474879

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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 284    acgtggcggtgggcaagggcgggt 307
              ||||||||||||||| ||||||||
Sbjct: 737626 acgtggcggtgggcacgggcgggt 737649

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>gb|AC170998.2| Mus musculus BAC clone RP24-137E7 from chromosome 17, complete sequence
          Length = 148715

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 449    aggtagaaacttacatgaac 468
              ||||||||||||||||||||
Sbjct: 139047 aggtagaaacttacatgaac 139066


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,245,179
Number of Sequences: 3902068
Number of extensions: 4245179
Number of successful extensions: 91484
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90546
Number of HSP's gapped (non-prelim): 938
length of query: 607
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 584
effective length of database: 17,143,297,704
effective search space: 10011685859136
effective search space used: 10011685859136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result