| Clone Name | bart42a08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC138307.2| Mus musculus BAC clone RP24-159M5 from 12, complete sequence Length = 165732 Score = 42.1 bits (21), Expect = 0.057 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 caagctctcaaggcactatct 28 ||||||||||||||||||||| Sbjct: 71739 caagctctcaaggcactatct 71759
>gb|AC091868.3| Homo sapiens chromosome 5 clone CTD-2372A4, complete sequence Length = 45976 Score = 38.2 bits (19), Expect = 0.90 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 agaaaaacaagctctcaaggcac 23 ||||||||||||||||| ||||| Sbjct: 20964 agaaaaacaagctctcatggcac 20942
>dbj|AK053344.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130010O16 product:unclassifiable, full insert sequence Length = 1219 Score = 38.2 bits (19), Expect = 0.90 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 gaaaaacaagctctcaagg 20 ||||||||||||||||||| Sbjct: 170 gaaaaacaagctctcaagg 152
>gb|AC102761.12| Mus musculus chromosome 8, clone RP24-227E21, complete sequence Length = 162108 Score = 38.2 bits (19), Expect = 0.90 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 gaaaaacaagctctcaagg 20 ||||||||||||||||||| Sbjct: 153175 gaaaaacaagctctcaagg 153157
>gb|AC103378.21| Mus musculus chromosome 8, clone RP24-231N10, complete sequence Length = 191479 Score = 38.2 bits (19), Expect = 0.90 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 gaaaaacaagctctcaagg 20 ||||||||||||||||||| Sbjct: 10438 gaaaaacaagctctcaagg 10420
>ref|XM_467099.1| Oryza sativa (japonica cultivar-group), mRNA Length = 810 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 tctcaaggcactatctat 30 |||||||||||||||||| Sbjct: 300 tctcaaggcactatctat 317
>emb|AL138753.8| Human DNA sequence from clone RP11-3L8 on chromosome 9 Contains the TYRP1 gene for tyrosinase-related protein 1, the 3' end of a novel gene and the 5' end of a novel gene (FLJ38505 FLJ90271), complete sequence Length = 162151 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 8 caagctctcaaggcacta 25 |||||||||||||||||| Sbjct: 136758 caagctctcaaggcacta 136775
>emb|BX119916.10| Zebrafish DNA sequence from clone CH211-202I5 in linkage group 11, complete sequence Length = 196164 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 agaaaaacaagctctcaa 18 |||||||||||||||||| Sbjct: 100441 agaaaaacaagctctcaa 100424
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 caaggcactatctatcta 33 |||||||||||||||||| Sbjct: 27342187 caaggcactatctatcta 27342204
>gb|AC008179.2| Homo sapiens BAC clone RP11-576F1 from 2, complete sequence Length = 181745 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 agaaaaacaagctctcaa 18 |||||||||||||||||| Sbjct: 61739 agaaaaacaagctctcaa 61756
>dbj|AP006460.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0003M19 Length = 171790 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 caaggcactatctatcta 33 |||||||||||||||||| Sbjct: 47848 caaggcactatctatcta 47865
>dbj|AP006456.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0030A22 Length = 141096 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 caaggcactatctatcta 33 |||||||||||||||||| Sbjct: 134055 caaggcactatctatcta 134072
>dbj|AB083069.2| Halocynthia roretzi HrGn gene for G-protein alpha subunit in n subclass, 5' flanking region and partial cds Length = 5781 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 17 aaggcactatctatctaa 34 |||||||||||||||||| Sbjct: 2243 aaggcactatctatctaa 2226
>gb|AC000356.1|HSAC000356 Human cosmid g1346a312, complete sequence Length = 39716 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 aacaagctctcaaggcac 23 |||||||||||||||||| Sbjct: 10879 aacaagctctcaaggcac 10862
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 agaaaaacaagctctcaa 18 |||||||||||||||||| Sbjct: 218488 agaaaaacaagctctcaa 218471
>gb|AC133513.3| Mus musculus BAC clone RP23-212E9 from 12, complete sequence Length = 177034 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 agaaaaacaagctctcaa 18 |||||||||||||||||| Sbjct: 147481 agaaaaacaagctctcaa 147464
>gb|AC169519.4| Mus musculus chromosome 5, clone wi1-2285D16, complete sequence Length = 40386 Score = 36.2 bits (18), Expect = 3.5 Identities = 21/22 (95%) Strand = Plus / Minus Query: 12 ctctcaaggcactatctatcta 33 |||||||||| ||||||||||| Sbjct: 13348 ctctcaaggctctatctatcta 13327 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,195,530 Number of Sequences: 3902068 Number of extensions: 1195530 Number of successful extensions: 75139 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75088 Number of HSP's gapped (non-prelim): 51 length of query: 36 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 16 effective length of database: 17,155,003,908 effective search space: 274480062528 effective search space used: 274480062528 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)