ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart42a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC138307.2| Mus musculus BAC clone RP24-159M5 from 12, comple... 42 0.057
2gb|AC091868.3| Homo sapiens chromosome 5 clone CTD-2372A4, compl... 38 0.90
3dbj|AK053344.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 38 0.90
4gb|AC102761.12| Mus musculus chromosome 8, clone RP24-227E21, co... 38 0.90
5gb|AC103378.21| Mus musculus chromosome 8, clone RP24-231N10, co... 38 0.90
6ref|XM_467099.1| Oryza sativa (japonica cultivar-group), mRNA 36 3.5
7emb|AL138753.8| Human DNA sequence from clone RP11-3L8 on chromo... 36 3.5
8emb|BX119916.10| Zebrafish DNA sequence from clone CH211-202I5 i... 36 3.5
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 36 3.5
10gb|AC008179.2| Homo sapiens BAC clone RP11-576F1 from 2, complet... 36 3.5
11dbj|AP006460.4| Oryza sativa (japonica cultivar-group) genomic D... 36 3.5
12dbj|AP006456.4| Oryza sativa (japonica cultivar-group) genomic D... 36 3.5
13dbj|AB083069.2| Halocynthia roretzi HrGn gene for G-protein alph... 36 3.5
14gb|AC000356.1|HSAC000356 Human cosmid g1346a312, complete sequence 36 3.5
15emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 36 3.5
16gb|AC133513.3| Mus musculus BAC clone RP23-212E9 from 12, comple... 36 3.5
17gb|AC169519.4| Mus musculus chromosome 5, clone wi1-2285D16, com... 36 3.5

>gb|AC138307.2| Mus musculus BAC clone RP24-159M5 from 12, complete sequence
          Length = 165732

 Score = 42.1 bits (21), Expect = 0.057
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 8     caagctctcaaggcactatct 28
             |||||||||||||||||||||
Sbjct: 71739 caagctctcaaggcactatct 71759



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>gb|AC091868.3| Homo sapiens chromosome 5 clone CTD-2372A4, complete sequence
          Length = 45976

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 1     agaaaaacaagctctcaaggcac 23
             ||||||||||||||||| |||||
Sbjct: 20964 agaaaaacaagctctcatggcac 20942



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>dbj|AK053344.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130010O16 product:unclassifiable, full
           insert sequence
          Length = 1219

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 2   gaaaaacaagctctcaagg 20
           |||||||||||||||||||
Sbjct: 170 gaaaaacaagctctcaagg 152



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>gb|AC102761.12| Mus musculus chromosome 8, clone RP24-227E21, complete sequence
          Length = 162108

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 2      gaaaaacaagctctcaagg 20
              |||||||||||||||||||
Sbjct: 153175 gaaaaacaagctctcaagg 153157



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>gb|AC103378.21| Mus musculus chromosome 8, clone RP24-231N10, complete sequence
          Length = 191479

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     gaaaaacaagctctcaagg 20
             |||||||||||||||||||
Sbjct: 10438 gaaaaacaagctctcaagg 10420



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>ref|XM_467099.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 810

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 13  tctcaaggcactatctat 30
           ||||||||||||||||||
Sbjct: 300 tctcaaggcactatctat 317



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>emb|AL138753.8| Human DNA sequence from clone RP11-3L8 on chromosome 9 Contains the TYRP1
              gene for tyrosinase-related protein 1, the 3' end of a
              novel gene and the 5' end of a novel gene (FLJ38505
              FLJ90271), complete sequence
          Length = 162151

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 8      caagctctcaaggcacta 25
              ||||||||||||||||||
Sbjct: 136758 caagctctcaaggcacta 136775



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>emb|BX119916.10| Zebrafish DNA sequence from clone CH211-202I5 in linkage group 11,
              complete sequence
          Length = 196164

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      agaaaaacaagctctcaa 18
              ||||||||||||||||||
Sbjct: 100441 agaaaaacaagctctcaa 100424



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 16       caaggcactatctatcta 33
                ||||||||||||||||||
Sbjct: 27342187 caaggcactatctatcta 27342204



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>gb|AC008179.2| Homo sapiens BAC clone RP11-576F1 from 2, complete sequence
          Length = 181745

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     agaaaaacaagctctcaa 18
             ||||||||||||||||||
Sbjct: 61739 agaaaaacaagctctcaa 61756



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>dbj|AP006460.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0003M19
          Length = 171790

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 16    caaggcactatctatcta 33
             ||||||||||||||||||
Sbjct: 47848 caaggcactatctatcta 47865



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>dbj|AP006456.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0030A22
          Length = 141096

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 16     caaggcactatctatcta 33
              ||||||||||||||||||
Sbjct: 134055 caaggcactatctatcta 134072



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>dbj|AB083069.2| Halocynthia roretzi HrGn gene for G-protein alpha subunit in n
            subclass, 5' flanking region and partial cds
          Length = 5781

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 17   aaggcactatctatctaa 34
            ||||||||||||||||||
Sbjct: 2243 aaggcactatctatctaa 2226



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>gb|AC000356.1|HSAC000356 Human cosmid g1346a312, complete sequence
          Length = 39716

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     aacaagctctcaaggcac 23
             ||||||||||||||||||
Sbjct: 10879 aacaagctctcaaggcac 10862



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>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      agaaaaacaagctctcaa 18
              ||||||||||||||||||
Sbjct: 218488 agaaaaacaagctctcaa 218471



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>gb|AC133513.3| Mus musculus BAC clone RP23-212E9 from 12, complete sequence
          Length = 177034

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      agaaaaacaagctctcaa 18
              ||||||||||||||||||
Sbjct: 147481 agaaaaacaagctctcaa 147464



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>gb|AC169519.4| Mus musculus chromosome 5, clone wi1-2285D16, complete sequence
          Length = 40386

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 12    ctctcaaggcactatctatcta 33
             |||||||||| |||||||||||
Sbjct: 13348 ctctcaaggctctatctatcta 13327


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,195,530
Number of Sequences: 3902068
Number of extensions: 1195530
Number of successful extensions: 75139
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75088
Number of HSP's gapped (non-prelim): 51
length of query: 36
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 16
effective length of database: 17,155,003,908
effective search space: 274480062528
effective search space used: 274480062528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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