ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart41a06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009437.1| Triticum aestivum clone wlmk4.pk0012.c2:fis, full insert mRNA sequence Length = 1966 Score = 242 bits (122), Expect = 1e-60 Identities = 131/134 (97%) Strand = Plus / Minus Query: 443 gtcgcgcccgccctgcccagccggctcgtctccgcggtggacctgcaccacaagggggtc 502 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1966 gtcgcgcccgccctgcccagccgtctcgtctccgcggtggacctgcaccacaagggggtc 1907 Query: 503 tgcatcatgtcgcgcgtggtggagaccgacgcctcgtcggcgtggttcctgggctcgccg 562 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct: 1906 tgcatcatgtcgcgcgtggtggagacggacacctcgtcggcgtggttcctgggctcgccg 1847 Query: 563 ttccgcgtcgacgc 576 |||||||||||||| Sbjct: 1846 ttccgcgtcgacgc 1833
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence Length = 123477 Score = 149 bits (75), Expect = 1e-32 Identities = 159/187 (85%) Strand = Plus / Plus Query: 144 ctccggcgtgcggcggcgtggcagagtcggtcatcgaggacctccccgcggacgtgctgt 203 |||||||||||||||||| | | | |||| ||||||||||| || ||||||| || Sbjct: 69469 ctccggcgtgcggcggcggcgtcgggacggtgatcgaggaccttccgacggacgtcctcg 69528 Query: 204 ccctcgtgctccgccggctcgacggcgcgtcgctggcggcgcttggctgcgcgagctcca 263 | ||||||||||| ||||||||||||||||||||||||||| | || |||||| |||||| Sbjct: 69529 cgctcgtgctccggcggctcgacggcgcgtcgctggcggcggtggggtgcgcgtgctcca 69588 Query: 264 gcttccacgacctcgccaccgaccccgagacatggcgcggactctgcctcgccctctggc 323 |||||| ||| |||||| ||||| ||||| |||||||| |||||||||||||| |||| Sbjct: 69589 gcttccgcgagctcgccgtcgaccaggagacgtggcgcggcctctgcctcgccctgtggc 69648 Query: 324 cgtcggt 330 ||||||| Sbjct: 69649 cgtcggt 69655 Score = 147 bits (74), Expect = 5e-32 Identities = 101/110 (91%) Strand = Plus / Plus Query: 467 ctcgtctccgcggtggacctgcaccacaagggggtctgcatcatgtcgcgcgtggtggag 526 ||||||||||| || |||||||||||| || |||||||||||||||||||| |||||| Sbjct: 69798 ctcgtctccgccgttgacctgcaccacggcggcgtctgcatcatgtcgcgcgtcgtggag 69857 Query: 527 accgacgcctcgtcggcgtggttcctgggctcgccgttccgcgtcgacgc 576 || ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69858 acggacacctcgtcggcgtggttcctgggctcgccgttccgcgtcgacgc 69907 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 381 accgggcgctcttcgccgacgcgttcccgttccc 414 |||| ||| ||||||||||||||||||||||||| Sbjct: 69700 accgtgcgttcttcgccgacgcgttcccgttccc 69733
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 149 bits (75), Expect = 1e-32 Identities = 159/187 (85%) Strand = Plus / Minus Query: 144 ctccggcgtgcggcggcgtggcagagtcggtcatcgaggacctccccgcggacgtgctgt 203 |||||||||||||||||| | | | |||| ||||||||||| || ||||||| || Sbjct: 2552935 ctccggcgtgcggcggcggcgtcgggacggtgatcgaggaccttccgacggacgtcctcg 2552876 Query: 204 ccctcgtgctccgccggctcgacggcgcgtcgctggcggcgcttggctgcgcgagctcca 263 | ||||||||||| ||||||||||||||||||||||||||| | || |||||| |||||| Sbjct: 2552875 cgctcgtgctccggcggctcgacggcgcgtcgctggcggcggtggggtgcgcgtgctcca 2552816 Query: 264 gcttccacgacctcgccaccgaccccgagacatggcgcggactctgcctcgccctctggc 323 |||||| ||| |||||| ||||| ||||| |||||||| |||||||||||||| |||| Sbjct: 2552815 gcttccgcgagctcgccgtcgaccaggagacgtggcgcggcctctgcctcgccctgtggc 2552756 Query: 324 cgtcggt 330 ||||||| Sbjct: 2552755 cgtcggt 2552749 Score = 147 bits (74), Expect = 5e-32 Identities = 101/110 (91%) Strand = Plus / Minus Query: 467 ctcgtctccgcggtggacctgcaccacaagggggtctgcatcatgtcgcgcgtggtggag 526 ||||||||||| || |||||||||||| || |||||||||||||||||||| |||||| Sbjct: 2552606 ctcgtctccgccgttgacctgcaccacggcggcgtctgcatcatgtcgcgcgtcgtggag 2552547 Query: 527 accgacgcctcgtcggcgtggttcctgggctcgccgttccgcgtcgacgc 576 || ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2552546 acggacacctcgtcggcgtggttcctgggctcgccgttccgcgtcgacgc 2552497 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 502 ctgcatcatgtcgcgcgtggtggagaccgacgcctcgtcggcgtggttcctgggctcgcc 561 ||||| ||||||||| || || ||||| ||| |||||||| |||||||||||||||||| Sbjct: 4462123 ctgcaccatgtcgcgtgtcgtcgagacggacatctcgtcggtgtggttcctgggctcgcc 4462064 Query: 562 gttccgcgtcgacgc 576 ||||| ||||||||| Sbjct: 4462063 gttccacgtcgacgc 4462049 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 390 tcttcgccgacgcgttcccgttcccagcgacgacggcggcggc 432 ||||||||||||||||||||||||| | | || |||||||||| Sbjct: 4462241 tcttcgccgacgcgttcccgttccccgaggcggcggcggcggc 4462199 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 381 accgggcgctcttcgccgacgcgttcccgttccc 414 |||| ||| ||||||||||||||||||||||||| Sbjct: 2552704 accgtgcgttcttcgccgacgcgttcccgttccc 2552671
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 149 bits (75), Expect = 1e-32 Identities = 159/187 (85%) Strand = Plus / Minus Query: 144 ctccggcgtgcggcggcgtggcagagtcggtcatcgaggacctccccgcggacgtgctgt 203 |||||||||||||||||| | | | |||| ||||||||||| || ||||||| || Sbjct: 2561966 ctccggcgtgcggcggcggcgtcgggacggtgatcgaggaccttccgacggacgtcctcg 2561907 Query: 204 ccctcgtgctccgccggctcgacggcgcgtcgctggcggcgcttggctgcgcgagctcca 263 | ||||||||||| ||||||||||||||||||||||||||| | || |||||| |||||| Sbjct: 2561906 cgctcgtgctccggcggctcgacggcgcgtcgctggcggcggtggggtgcgcgtgctcca 2561847 Query: 264 gcttccacgacctcgccaccgaccccgagacatggcgcggactctgcctcgccctctggc 323 |||||| ||| |||||| ||||| ||||| |||||||| |||||||||||||| |||| Sbjct: 2561846 gcttccgcgagctcgccgtcgaccaggagacgtggcgcggcctctgcctcgccctgtggc 2561787 Query: 324 cgtcggt 330 ||||||| Sbjct: 2561786 cgtcggt 2561780 Score = 147 bits (74), Expect = 5e-32 Identities = 101/110 (91%) Strand = Plus / Minus Query: 467 ctcgtctccgcggtggacctgcaccacaagggggtctgcatcatgtcgcgcgtggtggag 526 ||||||||||| || |||||||||||| || |||||||||||||||||||| |||||| Sbjct: 2561637 ctcgtctccgccgttgacctgcaccacggcggcgtctgcatcatgtcgcgcgtcgtggag 2561578 Query: 527 accgacgcctcgtcggcgtggttcctgggctcgccgttccgcgtcgacgc 576 || ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2561577 acggacacctcgtcggcgtggttcctgggctcgccgttccgcgtcgacgc 2561528 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 502 ctgcatcatgtcgcgcgtggtggagaccgacgcctcgtcggcgtggttcctgggctcgcc 561 ||||| ||||||||| || || ||||| ||| |||||||| |||||||||||||||||| Sbjct: 4470817 ctgcaccatgtcgcgtgtcgtcgagacggacatctcgtcggtgtggttcctgggctcgcc 4470758 Query: 562 gttccgcgtcgacgc 576 ||||| ||||||||| Sbjct: 4470757 gttccacgtcgacgc 4470743 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 390 tcttcgccgacgcgttcccgttcccagcgacgacggcggcggc 432 ||||||||||||||||||||||||| | | || |||||||||| Sbjct: 4470935 tcttcgccgacgcgttcccgttccccgaggcggcggcggcggc 4470893 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 381 accgggcgctcttcgccgacgcgttcccgttccc 414 |||| ||| ||||||||||||||||||||||||| Sbjct: 2561735 accgtgcgttcttcgccgacgcgttcccgttccc 2561702
>dbj|AK108413.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H04, full insert sequence Length = 1396 Score = 141 bits (71), Expect = 3e-30 Identities = 158/187 (84%) Strand = Plus / Plus Query: 144 ctccggcgtgcggcggcgtggcagagtcggtcatcgaggacctccccgcggacgtgctgt 203 |||||||||||||||||| | | | |||| ||||||||||| || ||||||| || Sbjct: 267 ctccggcgtgcggcggcggcgtcgggacggtgatcgaggaccttccgacggacgtcctcg 326 Query: 204 ccctcgtgctccgccggctcgacggcgcgtcgctggcggcgcttggctgcgcgagctcca 263 | ||||||||||| ||||||||||||||||||||||||||| | || |||||| ||| || Sbjct: 327 cgctcgtgctccggcggctcgacggcgcgtcgctggcggcggtggggtgcgcgtgcttca 386 Query: 264 gcttccacgacctcgccaccgaccccgagacatggcgcggactctgcctcgccctctggc 323 |||||| ||| |||||| ||||| ||||| |||||||| |||||||||||||| |||| Sbjct: 387 gcttccgcgagctcgccgtcgaccaggagacgtggcgcggcctctgcctcgccctgtggc 446 Query: 324 cgtcggt 330 ||||||| Sbjct: 447 cgtcggt 453 Score = 139 bits (70), Expect = 1e-29 Identities = 100/110 (90%) Strand = Plus / Plus Query: 467 ctcgtctccgcggtggacctgcaccacaagggggtctgcatcatgtcgcgcgtggtggag 526 ||||||||||| || |||||||||||| || || ||||||||||||||||| |||||| Sbjct: 596 ctcgtctccgccgttgacctgcaccacggcggcgtttgcatcatgtcgcgcgtcgtggag 655 Query: 527 accgacgcctcgtcggcgtggttcctgggctcgccgttccgcgtcgacgc 576 || ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 656 acggacacctcgtcggcgtggttcctgggctcgccgttccgcgtcgacgc 705 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 381 accgggcgctcttcgccgacgcgttcccgttccc 414 |||| ||| ||||||||||||||||||||||||| Sbjct: 498 accgtgcgttcttcgccgacgcgttcccgttccc 531
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 131 bits (66), Expect = 3e-27 Identities = 102/114 (89%) Strand = Plus / Minus Query: 463 ccggctcgtctccgcggtggacctgcaccacaagggggtctgcatcatgtcgcgcgtggt 522 ||||||||||||||| || |||||||||||| | |||||| ||||||||||||| || Sbjct: 2784125 ccggctcgtctccgccgtcgacctgcaccacggcgaagtctgcctcatgtcgcgcgtcgt 2784066 Query: 523 ggagaccgacgcctcgtcggcgtggttcctgggctcgccgttccgcgtcgacgc 576 |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 2784065 ggagacggacgcctcgtcggagtggttcttgggctcgccgttccgcgtcgacgc 2784012 Score = 93.7 bits (47), Expect = 6e-16 Identities = 106/125 (84%), Gaps = 3/125 (2%) Strand = Plus / Minus Query: 194 gacgtgctgtccctcgtgctccgccggctcgacg---gcgcgtcgctggcggcgcttggc 250 |||||||| ||||||||||| ||||||||||||| |||| || ||||| ||||| ||| Sbjct: 2784400 gacgtgctctccctcgtgctacgccggctcgacgacggcgcctccctggccgcgctcggc 2784341 Query: 251 tgcgcgagctccagcttccacgacctcgccaccgaccccgagacatggcgcggactctgc 310 |||||| ||||| ||||| ||| |||||| ||||| | ||||| |||||||| |||||| Sbjct: 2784340 tgcgcgtgctccgccttccgcgagctcgccgccgacgcggagacgtggcgcggcctctgc 2784281 Query: 311 ctcgc 315 ||||| Sbjct: 2784280 ctcgc 2784276 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 381 accgggcgctcttcgccgacgcgttcccgttccc 414 ||||||||||||||||||||||||||||| |||| Sbjct: 2784207 accgggcgctcttcgccgacgcgttcccgctccc 2784174
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 131 bits (66), Expect = 3e-27 Identities = 102/114 (89%) Strand = Plus / Minus Query: 463 ccggctcgtctccgcggtggacctgcaccacaagggggtctgcatcatgtcgcgcgtggt 522 ||||||||||||||| || |||||||||||| | |||||| ||||||||||||| || Sbjct: 2784069 ccggctcgtctccgccgtcgacctgcaccacggcgaagtctgcctcatgtcgcgcgtcgt 2784010 Query: 523 ggagaccgacgcctcgtcggcgtggttcctgggctcgccgttccgcgtcgacgc 576 |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 2784009 ggagacggacgcctcgtcggagtggttcttgggctcgccgttccgcgtcgacgc 2783956 Score = 93.7 bits (47), Expect = 6e-16 Identities = 106/125 (84%), Gaps = 3/125 (2%) Strand = Plus / Minus Query: 194 gacgtgctgtccctcgtgctccgccggctcgacg---gcgcgtcgctggcggcgcttggc 250 |||||||| ||||||||||| ||||||||||||| |||| || ||||| ||||| ||| Sbjct: 2784344 gacgtgctctccctcgtgctacgccggctcgacgacggcgcctccctggccgcgctcggc 2784285 Query: 251 tgcgcgagctccagcttccacgacctcgccaccgaccccgagacatggcgcggactctgc 310 |||||| ||||| ||||| ||| |||||| ||||| | ||||| |||||||| |||||| Sbjct: 2784284 tgcgcgtgctccgccttccgcgagctcgccgccgacgcggagacgtggcgcggcctctgc 2784225 Query: 311 ctcgc 315 ||||| Sbjct: 2784224 ctcgc 2784220 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 381 accgggcgctcttcgccgacgcgttcccgttccc 414 ||||||||||||||||||||||||||||| |||| Sbjct: 2784151 accgggcgctcttcgccgacgcgttcccgctccc 2784118
>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145539 Score = 131 bits (66), Expect = 3e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 463 ccggctcgtctccgcggtggacctgcaccacaagggggtctgcatcatgtcgcgcgtggt 522 ||||||||||||||| || |||||||||||| | |||||| ||||||||||||| || Sbjct: 86322 ccggctcgtctccgccgtcgacctgcaccacggcgaagtctgcctcatgtcgcgcgtcgt 86381 Query: 523 ggagaccgacgcctcgtcggcgtggttcctgggctcgccgttccgcgtcgacgc 576 |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 86382 ggagacggacgcctcgtcggagtggttcttgggctcgccgttccgcgtcgacgc 86435 Score = 93.7 bits (47), Expect = 6e-16 Identities = 106/125 (84%), Gaps = 3/125 (2%) Strand = Plus / Plus Query: 194 gacgtgctgtccctcgtgctccgccggctcgacg---gcgcgtcgctggcggcgcttggc 250 |||||||| ||||||||||| ||||||||||||| |||| || ||||| ||||| ||| Sbjct: 86047 gacgtgctctccctcgtgctacgccggctcgacgacggcgcctccctggccgcgctcggc 86106 Query: 251 tgcgcgagctccagcttccacgacctcgccaccgaccccgagacatggcgcggactctgc 310 |||||| ||||| ||||| ||| |||||| ||||| | ||||| |||||||| |||||| Sbjct: 86107 tgcgcgtgctccgccttccgcgagctcgccgccgacgcggagacgtggcgcggcctctgc 86166 Query: 311 ctcgc 315 ||||| Sbjct: 86167 ctcgc 86171 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 381 accgggcgctcttcgccgacgcgttcccgttccc 414 ||||||||||||||||||||||||||||| |||| Sbjct: 86240 accgggcgctcttcgccgacgcgttcccgctccc 86273
>ref|XM_471370.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1074 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 507 tcatgtcgcgcgtggtggagaccgacgcctcgtcggcgtggttcctgggctcgccgttcc 566 ||||||||||||| ||||||| ||| ||||||||||||||||| |||||||| ||||| Sbjct: 599 tcatgtcgcgcgtcgtggagagggacacctcgtcggcgtggttcttgggctcgttgttcc 658 Query: 567 gcgtcgacg 575 ||||||||| Sbjct: 659 gcgtcgacg 667
>emb|AL731604.3|OSJN00247 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042D13, complete sequence Length = 163429 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 507 tcatgtcgcgcgtggtggagaccgacgcctcgtcggcgtggttcctgggctcgccgttcc 566 ||||||||||||| ||||||| ||| ||||||||||||||||| |||||||| ||||| Sbjct: 11233 tcatgtcgcgcgtcgtggagagggacacctcgtcggcgtggttcttgggctcgttgttcc 11174 Query: 567 gcgtcgacg 575 ||||||||| Sbjct: 11173 gcgtcgacg 11165
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 507 tcatgtcgcgcgtggtggagaccgacgcctcgtcggcgtggttcctgggctcgccgttcc 566 ||||||||||||| ||||||| ||| ||||||||||||||||| |||||||| ||||| Sbjct: 10511896 tcatgtcgcgcgtcgtggagagggacacctcgtcggcgtggttcttgggctcgttgttcc 10511837 Query: 567 gcgtcgacg 575 ||||||||| Sbjct: 10511836 gcgtcgacg 10511828 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 388 gctcttcgccgacgcgttcccgttccc 414 ||||||||||||||||||||||||||| Sbjct: 20495795 gctcttcgccgacgcgttcccgttccc 20495769 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Minus Query: 536 tcgtcggcgtggttcctgggctcgccgttccg 567 |||||| |||||||||| |||||||||||||| Sbjct: 20495644 tcgtcgccgtggttcctcggctcgccgttccg 20495613 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 422 acggcggcggccacggccacgg 443 |||||||||||||||||||||| Sbjct: 20220982 acggcggcggccacggccacgg 20220961
>emb|AL663009.3|OSJN00210 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0052B05, complete sequence Length = 144687 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 507 tcatgtcgcgcgtggtggagaccgacgcctcgtcggcgtggttcctgggctcgccgttcc 566 ||||||||||||| ||||||| ||| ||||||||||||||||| |||||||| ||||| Sbjct: 127218 tcatgtcgcgcgtcgtggagagggacacctcgtcggcgtggttcttgggctcgttgttcc 127159 Query: 567 gcgtcgacg 575 ||||||||| Sbjct: 127158 gcgtcgacg 127150
>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15, complete sequence Length = 142289 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 502 ctgcatcatgtcgcgcgtggtggagaccgacgcctcgtcggcgtggttcctgggctcgcc 561 ||||| ||||||||| || || ||||| ||| |||||||| |||||||||||||||||| Sbjct: 113486 ctgcaccatgtcgcgtgtcgtcgagacggacatctcgtcggtgtggttcctgggctcgcc 113427 Query: 562 gttccgcgtcgacgc 576 ||||| ||||||||| Sbjct: 113426 gttccacgtcgacgc 113412 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 390 tcttcgccgacgcgttcccgttcccagcgacgacggcggcggc 432 ||||||||||||||||||||||||| | | || |||||||||| Sbjct: 113604 tcttcgccgacgcgttcccgttccccgaggcggcggcggcggc 113562
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 507 tcatgtcgcgcgtggtggagaccgacgcctcgtcggcgtggttcctgggctcgccgttcc 566 ||||||||||||| ||||||| ||| ||||||| ||||||||||| |||||| || ||| Sbjct: 6021369 tcatgtcgcgcgtcatggagacagacacctcgtcagcgtggttcctaggctcgtcgctcc 6021310 Query: 567 gcgtcgacgc 576 | |||||||| Sbjct: 6021309 gtgtcgacgc 6021300
>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644A02 Length = 144954 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 507 tcatgtcgcgcgtggtggagaccgacgcctcgtcggcgtggttcctgggctcgccgttcc 566 ||||||||||||| ||||||| ||| ||||||| ||||||||||| |||||| || ||| Sbjct: 25868 tcatgtcgcgcgtcatggagacagacacctcgtcagcgtggttcctaggctcgtcgctcc 25809 Query: 567 gcgtcgacgc 576 | |||||||| Sbjct: 25808 gtgtcgacgc 25799
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 511 gtcgcgcgtggtggagaccgacgcctcgtcggcgtggttcctgggctcgccgttccgcgt 570 |||| |||| ||||||| ||| ||||||||||||||||||| || | |||||||||||| Sbjct: 32301721 gtcgtgcgtcgtggagaaggacacctcgtcggcgtggttcctaggatagccgttccgcgt 32301780 Query: 571 cga 573 ||| Sbjct: 32301781 cga 32301783 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Minus Query: 545 tggttcctgggctcgccgttccgcgtcgacgc 576 |||||||| | ||||||||||||||||||||| Sbjct: 19778269 tggttcctcgcctcgccgttccgcgtcgacgc 19778238 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 417 cgacgacggcggcggccacggc 438 |||||||||||||||||||||| Sbjct: 35590526 cgacgacggcggcggccacggc 35590547 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 tcccagcgacgacggcggcg 430 |||||||||||||||||||| Sbjct: 31979266 tcccagcgacgacggcggcg 31979285 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 cggcggcggccacggccacg 442 |||||||||||||||||||| Sbjct: 9471568 cggcggcggccacggccacg 9471549
>dbj|AP004817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0539D10 Length = 158691 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 511 gtcgcgcgtggtggagaccgacgcctcgtcggcgtggttcctgggctcgccgttccgcgt 570 |||| |||| ||||||| ||| ||||||||||||||||||| || | |||||||||||| Sbjct: 145734 gtcgtgcgtcgtggagaaggacacctcgtcggcgtggttcctaggatagccgttccgcgt 145793 Query: 571 cga 573 ||| Sbjct: 145794 cga 145796
>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A11 Length = 132352 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 511 gtcgcgcgtggtggagaccgacgcctcgtcggcgtggttcctgggctcgccgttccgcgt 570 |||| |||| ||||||| ||| ||||||||||||||||||| || | |||||||||||| Sbjct: 77553 gtcgtgcgtcgtggagaaggacacctcgtcggcgtggttcctaggatagccgttccgcgt 77612 Query: 571 cga 573 ||| Sbjct: 77613 cga 77615
>ref|XM_472415.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 936 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 388 gctcttcgccgacgcgttcccgttccc 414 ||||||||||||||||||||||||||| Sbjct: 243 gctcttcgccgacgcgttcccgttccc 269 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 536 tcgtcggcgtggttcctgggctcgccgttccg 567 |||||| |||||||||| |||||||||||||| Sbjct: 394 tcgtcgccgtggttcctcggctcgccgttccg 425
>emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000126_13, complete sequence Length = 113960 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 388 gctcttcgccgacgcgttcccgttccc 414 ||||||||||||||||||||||||||| Sbjct: 109215 gctcttcgccgacgcgttcccgttccc 109189 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Minus Query: 536 tcgtcggcgtggttcctgggctcgccgttccg 567 |||||| |||||||||| |||||||||||||| Sbjct: 109064 tcgtcgccgtggttcctcggctcgccgttccg 109033
>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12, complete sequence Length = 116952 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 388 gctcttcgccgacgcgttcccgttccc 414 ||||||||||||||||||||||||||| Sbjct: 6423 gctcttcgccgacgcgttcccgttccc 6397 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Minus Query: 536 tcgtcggcgtggttcctgggctcgccgttccg 567 |||||| |||||||||| |||||||||||||| Sbjct: 6272 tcgtcgccgtggttcctcggctcgccgttccg 6241
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 390 tcttcgccgacgcgttcccgttcc 413 |||||||||||||||||||||||| Sbjct: 28240690 tcttcgccgacgcgttcccgttcc 28240713 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 538 gtcggcgtggttcctgggctcgccgttccgcgtcgacgc 576 |||| |||||||||| ||||||| ||| ||||||||||| Sbjct: 28240804 gtcgccgtggttcctaggctcgctgttacgcgtcgacgc 28240842 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 cggcggcggccacggccacg 442 |||||||||||||||||||| Sbjct: 39453515 cggcggcggccacggccacg 39453496 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 cggcggcggccacggccacg 442 |||||||||||||||||||| Sbjct: 7847805 cggcggcggccacggccacg 7847824
>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0478H03 Length = 167560 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 390 tcttcgccgacgcgttcccgttcc 413 |||||||||||||||||||||||| Sbjct: 75197 tcttcgccgacgcgttcccgttcc 75220 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 538 gtcggcgtggttcctgggctcgccgttccgcgtcgacgc 576 |||| |||||||||| ||||||| ||| ||||||||||| Sbjct: 75311 gtcgccgtggttcctaggctcgctgttacgcgtcgacgc 75349
>dbj|AP003347.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0445E10 Length = 145912 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 390 tcttcgccgacgcgttcccgttcc 413 |||||||||||||||||||||||| Sbjct: 124684 tcttcgccgacgcgttcccgttcc 124707 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 538 gtcggcgtggttcctgggctcgccgttccgcgtcgacgc 576 |||| |||||||||| ||||||| ||| ||||||||||| Sbjct: 124798 gtcgccgtggttcctaggctcgctgttacgcgtcgacgc 124836
>dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G07 Length = 149119 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Minus Query: 545 tggttcctgggctcgccgttccgcgtcgacgc 576 |||||||| | ||||||||||||||||||||| Sbjct: 86820 tggttcctcgcctcgccgttccgcgtcgacgc 86789
>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1136H02 Length = 145086 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Minus Query: 545 tggttcctgggctcgccgttccgcgtcgacgc 576 |||||||| | ||||||||||||||||||||| Sbjct: 135027 tggttcctcgcctcgccgttccgcgtcgacgc 134996
>dbj|AK121479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149I19, full insert sequence Length = 712 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 536 tcgtcggcgtggttcctgggctcgccgttccg 567 |||||| |||||||||| |||||||||||||| Sbjct: 83 tcgtcgccgtggttcctcggctcgccgttccg 114
>dbj|AK110519.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-167-H01, full insert sequence Length = 1415 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 390 tcttcgccgacgcgttcccgttcc 413 |||||||||||||||||||||||| Sbjct: 826 tcttcgccgacgcgttcccgttcc 849 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Plus Query: 538 gtcggcgtggttcctgggctcgccgttccgcgtcgacgc 576 |||| |||||||||| ||||||| ||| ||||||||||| Sbjct: 940 gtcgccgtggttcctaggctcgctgttacgcgtcgacgc 978
>gb|DQ352178.1| Hordeum vulgare subsp. vulgare rust resistance gene ABC1041 (ABC1041) gene, complete cds Length = 8735 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Minus Query: 274 cctcgccaccgaccccgagacatggcgcggactctgcctcgccctctggccgtcg 328 ||||||| ||||||| ||||| ||||||| ||||||||||| | ||||||||| Sbjct: 7869 cctcgccgccgacccggagacgtggcgcgcgctctgcctcgcgcggtggccgtcg 7815
>ref|XM_468508.1| Oryza sativa (japonica cultivar-group), mRNA Length = 642 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 417 cgacgacggcggcggccacggc 438 |||||||||||||||||||||| Sbjct: 595 cgacgacggcggcggccacggc 616
>ref|XM_467963.1| Oryza sativa (japonica cultivar-group), mRNA Length = 852 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 511 gtcgcgcgtggtggagaccgacgcctcgtcggcgtggttcct 552 |||| |||| ||||||| ||| ||||||||||||||||||| Sbjct: 804 gtcgtgcgtcgtggagaaggacacctcgtcggcgtggttcct 845
>ref|XM_477081.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3138 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 422 acggcggcggccacggccacgg 443 |||||||||||||||||||||| Sbjct: 506 acggcggcggccacggccacgg 485
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 422 acggcggcggccacggccacgg 443 |||||||||||||||||||||| Sbjct: 185767 acggcggcggccacggccacgg 185746
>ref|XM_361442.1| Magnaporthe grisea 70-15 predicted protein (MG03916.4) partial mRNA Length = 921 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 417 cgacgacggcggcggccacggccacg 442 |||| ||||||||||||||||||||| Sbjct: 534 cgacaacggcggcggccacggccacg 559
>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13 Length = 341957 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 422 acggcggcggccacggccacgg 443 |||||||||||||||||||||| Sbjct: 185599 acggcggcggccacggccacgg 185578
>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14 Length = 343050 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 422 acggcggcggccacggccacgg 443 |||||||||||||||||||||| Sbjct: 185789 acggcggcggccacggccacgg 185768
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 422 acggcggcggccacggccacgg 443 |||||||||||||||||||||| Sbjct: 5809345 acggcggcggccacggccacgg 5809366
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1119_B04 Length = 151721 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 422 acggcggcggccacggccacgg 443 |||||||||||||||||||||| Sbjct: 116373 acggcggcggccacggccacgg 116394
>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0452F04 Length = 171421 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 417 cgacgacggcggcggccacggc 438 |||||||||||||||||||||| Sbjct: 106918 cgacgacggcggcggccacggc 106939
>dbj|AK111823.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048C13, full insert sequence Length = 3430 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 422 acggcggcggccacggccacgg 443 |||||||||||||||||||||| Sbjct: 293 acggcggcggccacggccacgg 272
>gb|AY602222.1| Petromyzon marinus bone morphogenetic protein 24C (BMP24C) mRNA, complete cds Length = 2358 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 gcgacgacggcggcggccacg 436 ||||||||||||||||||||| Sbjct: 1218 gcgacgacggcggcggccacg 1238
>ref|XM_475887.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 438 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 425 gcggcggccacggccacggtc 445 ||||||||||||||||||||| Sbjct: 356 gcggcggccacggccacggtc 376
>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence Length = 153351 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 acgacctcgccaccgaccccg 290 ||||||||||||||||||||| Sbjct: 50386 acgacctcgccaccgaccccg 50406
>gb|BT018924.1| Zea mays clone Contig43.F mRNA sequence Length = 1361 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 417 cgacgacggcggcggccacggccac 441 ||||||||||| ||||||||||||| Sbjct: 455 cgacgacggcgacggccacggccac 479
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 418 gacgacggcggcggccacggc 438 ||||||||||||||||||||| Sbjct: 37196 gacgacggcggcggccacggc 37176
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 cggcggcggccacggccacgg 443 ||||||||||||||||||||| Sbjct: 93456 cggcggcggccacggccacgg 93476
>gb|AC146440.5| Pan troglodytes BAC clone RP43-11P11 from 7, complete sequence Length = 181369 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 cggcggcggccacggccacgg 443 ||||||||||||||||||||| Sbjct: 79716 cggcggcggccacggccacgg 79736
>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03, complete sequence Length = 144601 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 425 gcggcggccacggccacggtc 445 ||||||||||||||||||||| Sbjct: 14339 gcggcggccacggccacggtc 14359
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 gctcgacggcgcgtcgctggc 240 ||||||||||||||||||||| Sbjct: 2865555 gctcgacggcgcgtcgctggc 2865575
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 418 gacgacggcggcggccacggc 438 ||||||||||||||||||||| Sbjct: 103054 gacgacggcggcggccacggc 103034
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 418 gacgacggcggcggccacggc 438 ||||||||||||||||||||| Sbjct: 8130 gacgacggcggcggccacggc 8150
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 cggcgcgtcgctggcggcgct 246 ||||||||||||||||||||| Sbjct: 3198509 cggcgcgtcgctggcggcgct 3198529
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 cggcggcggccacggccacgg 443 ||||||||||||||||||||| Sbjct: 9538 cggcggcggccacggccacgg 9558
>gb|U60315.1|MCU60315 Molluscum contagiosum virus subtype 1, complete genome Length = 190289 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 500 gtctgcatcatgtcgcgcgtggtgg 524 |||||||||||| |||||||||||| Sbjct: 136321 gtctgcatcatgccgcgcgtggtgg 136297
>gb|U86937.1|MCU86937 Molluscum contagiosum virus subtype 1 clone B1-15 homolog of vaccinia A10L (B1-15) gene, partial cds Length = 1269 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 500 gtctgcatcatgtcgcgcgtggtgg 524 |||||||||||| |||||||||||| Sbjct: 1011 gtctgcatcatgccgcgcgtggtgg 987
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 gcggacgtgctgtccctcgtg 211 ||||||||||||||||||||| Sbjct: 3185804 gcggacgtgctgtccctcgtg 3185824
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 418 gacgacggcggcggccacggc 438 ||||||||||||||||||||| Sbjct: 18741776 gacgacggcggcggccacggc 18741756 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 cagcgacgacggcggcggccacgg 437 ||||||||||||||||||| |||| Sbjct: 852622 cagcgacgacggcggcggcgacgg 852645
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 425 gcggcggccacggccacggtc 445 ||||||||||||||||||||| Sbjct: 27418209 gcggcggccacggccacggtc 27418229 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 cggcggcggccacggccacgg 443 ||||||||||||||||||||| Sbjct: 2999440 cggcggcggccacggccacgg 2999460 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ccccgagacatggcgcggac 305 |||||||||||||||||||| Sbjct: 21643524 ccccgagacatggcgcggac 21643543
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 ccacggccacggtcgcgcccg 452 ||||||||||||||||||||| Sbjct: 2746263 ccacggccacggtcgcgcccg 2746243
>dbj|AK069230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018F12, full insert sequence Length = 803 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 425 gcggcggccacggccacggtc 445 ||||||||||||||||||||| Sbjct: 441 gcggcggccacggccacggtc 461
>dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F09, full insert sequence Length = 1415 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 acgacctcgccaccgaccccg 290 ||||||||||||||||||||| Sbjct: 73 acgacctcgccaccgaccccg 93
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 418 gacgacggcggcggccacggc 438 ||||||||||||||||||||| Sbjct: 18752629 gacgacggcggcggccacggc 18752609 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 cagcgacgacggcggcggccacgg 437 ||||||||||||||||||| |||| Sbjct: 852619 cagcgacgacggcggcggcgacgg 852642
>gb|AY465069.1| Stagnicola emarginata 28S ribosomal RNA gene, partial sequence Length = 1440 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 ctcgccaccgaccccgagaca 295 ||||||||||||||||||||| Sbjct: 721 ctcgccaccgaccccgagaca 701
>ref|NM_188721.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1380 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 cggcggcggccacggccacg 442 |||||||||||||||||||| Sbjct: 506 cggcggcggccacggccacg 525
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 cggtcgcgcccgccctgccc 460 |||||||||||||||||||| Sbjct: 396406 cggtcgcgcccgccctgccc 396387
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 421 gacggcggcggccacggccacggt 444 ||||||||||| |||||||||||| Sbjct: 2982715 gacggcggcggtcacggccacggt 2982738
>ref|XM_463573.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1452 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 cggcggcggccacggccacg 442 |||||||||||||||||||| Sbjct: 795 cggcggcggccacggccacg 814
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ccccgagacatggcgcggac 305 |||||||||||||||||||| Sbjct: 34700 ccccgagacatggcgcggac 34719
>gb|AC112968.11| Mus musculus chromosome 1, clone RP24-273P12, complete sequence Length = 181519 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 gtgtgtgtccaccatgacgg 104 |||||||||||||||||||| Sbjct: 145950 gtgtgtgtccaccatgacgg 145969
>ref|XM_365665.1| Magnaporthe grisea 70-15 hypothetical protein (MG02367.4) partial mRNA Length = 1872 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 cggcggcggccacggccacg 442 |||||||||||||||||||| Sbjct: 780 cggcggcggccacggccacg 799
>gb|AY576796.1| Actinoplanes phage phiAsp2, complete genome Length = 58638 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 cggcggcggccacggccacg 442 |||||||||||||||||||| Sbjct: 2804 cggcggcggccacggccacg 2785
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 gacggcggcggccacggcca 440 |||||||||||||||||||| Sbjct: 3701561 gacggcggcggccacggcca 3701580
>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome Length = 241087 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 cagcgacgacggcggcggcc 433 |||||||||||||||||||| Sbjct: 31120 cagcgacgacggcggcggcc 31139
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 414 cagcgacgacggcggcggccacgg 437 ||||||||||||||||||| |||| Sbjct: 852622 cagcgacgacggcggcggcgacgg 852645
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 acgacggcggcggccacggc 438 |||||||||||||||||||| Sbjct: 85855 acgacggcggcggccacggc 85836
>emb|AJ851467.1| Gallus gallus mRNA for hypothetical protein, clone 3k9 Length = 2187 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 gcgacgacggcggcggccac 435 |||||||||||||||||||| Sbjct: 198 gcgacgacggcggcggccac 179
>ref|NM_001012605.1| Gallus gallus ADP-ribosylation-like factor 6 interacting protein 5 (ARL6IP5), mRNA Length = 2187 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 gcgacgacggcggcggccac 435 |||||||||||||||||||| Sbjct: 198 gcgacgacggcggcggccac 179
>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0497A05 Length = 130919 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 cggcggcggccacggccacg 442 |||||||||||||||||||| Sbjct: 7957 cggcggcggccacggccacg 7938
>gb|AC098694.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1014H12, complete sequence Length = 129420 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 414 cagcgacgacggcggcggccacgg 437 ||||||||||||||||||| |||| Sbjct: 83560 cagcgacgacggcggcggcgacgg 83537
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 ggcggcggccacggccacgg 443 |||||||||||||||||||| Sbjct: 1347721 ggcggcggccacggccacgg 1347740
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 206 ctcgtgctccgccggctcgacggc 229 ||||||||| |||||||||||||| Sbjct: 116005 ctcgtgctcggccggctcgacggc 116028
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 cctgctgccgcggcaccggcgacg 374 ||||| |||||||||||||||||| Sbjct: 670603 cctgccgccgcggcaccggcgacg 670626
>ref|NM_001007816.1| Bos taurus Fas-associated via death domain (FADD), mRNA Length = 847 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ctgcgcgagctccagcttcc 269 |||||||||||||||||||| Sbjct: 190 ctgcgcgagctccagcttcc 171
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 418 gacgacggcggcggccacggccacggtcgcgcccgc 453 ||||||||||||| || ||||| |||||||| |||| Sbjct: 11528 gacgacggcggcgcccgcggccgcggtcgcgaccgc 11563
>gb|AY190527.1| Pseudorabies virus strain Ea UL50 protein (UL50) gene, partial cds; and O-glycosylated structural protein gN (UL49.5), UL49 tegument protein (UL49), and UL48 tegument protein (UL48) genes, complete cds Length = 2906 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 418 gacgacggcggcggccacggccacggtcgcgcccgc 453 ||||||||||||| || ||||| |||||||| |||| Sbjct: 2778 gacgacggcggcgcccgcggccgcggtcgcgaccgc 2813
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 382 ccgggcgctcttcgccgacgcgttcccg 409 ||||||||||| |||||||||| ||||| Sbjct: 3929330 ccgggcgctctacgccgacgcgatcccg 3929357 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 cgacggcgcgtcgctggcggcgct 246 |||||||||| ||||||||||||| Sbjct: 1472391 cgacggcgcggcgctggcggcgct 1472414
>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1417F08 Length = 155536 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 cggcggcggccacggccacg 442 |||||||||||||||||||| Sbjct: 28529 cggcggcggccacggccacg 28510
>dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1066G12 Length = 136263 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 cggcggcggccacggccacg 442 |||||||||||||||||||| Sbjct: 42751 cggcggcggccacggccacg 42770
>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0006C08 Length = 151987 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 cggcggcggccacggccacg 442 |||||||||||||||||||| Sbjct: 85129 cggcggcggccacggccacg 85110
>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0471A11 Length = 157740 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 tcccagcgacgacggcggcg 430 |||||||||||||||||||| Sbjct: 140267 tcccagcgacgacggcggcg 140286
>dbj|AK107468.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-B01, full insert sequence Length = 1783 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 cggcggcggccacggccacg 442 |||||||||||||||||||| Sbjct: 995 cggcggcggccacggccacg 1014
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 ttgaggagagcatgatgagctacg 140 |||||||| ||||||||||||||| Sbjct: 1287836 ttgaggagggcatgatgagctacg 1287859
>gb|U68299.1|MCU68299 Mouse cytomegalovirus 1 complete genomic sequence Length = 230278 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 cggcggcggccacggccacg 442 |||||||||||||||||||| Sbjct: 170444 cggcggcggccacggccacg 170425
>emb|CT025661.8| Mouse DNA sequence from clone RP23-357H5 on chromosome 9, complete sequence Length = 219201 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ataaacatatacgtacttgacacg 24 ||||| |||||||||||||||||| Sbjct: 142459 ataaaaatatacgtacttgacacg 142436
>emb|AJ437285.1|SHE437285 Suid herpesvirus 1 strain Kaplan UL49 gene for UL49 tegument protein and UL48 gene for UL48 tegument protein, strain Ka Length = 2200 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 418 gacgacggcggcggccacggccacggtcgcgcccgc 453 ||||||||||||| || ||||| |||||||| |||| Sbjct: 2034 gacgacggcggcgcccgcggccgcggtcgcgaccgc 2069
>gb|AF013108.1|AF013108 Chlamydomonas reinhardtii tubulin Uni3 (UNI3) gene, complete cds Length = 5529 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 cggcgtgcggcggcgtggca 166 |||||||||||||||||||| Sbjct: 3026 cggcgtgcggcggcgtggca 3007
>gb|AY725483.1| Bos taurus Fas-associated via death domain (FADD) mRNA, complete cds Length = 847 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ctgcgcgagctccagcttcc 269 |||||||||||||||||||| Sbjct: 190 ctgcgcgagctccagcttcc 171 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,253,507 Number of Sequences: 3902068 Number of extensions: 3253507 Number of successful extensions: 83325 Number of sequences better than 10.0: 97 Number of HSP's better than 10.0 without gapping: 107 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78811 Number of HSP's gapped (non-prelim): 4501 length of query: 576 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 553 effective length of database: 17,143,297,704 effective search space: 9480243630312 effective search space used: 9480243630312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
