>SYE_METTH (O26157) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 553

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
 Frame = -2

Query: 574 VTYGRVDQDEQRRATRGGRELVKRGE------EHRGTVG--LRRGGRPRVAVDLALEEGV 419
           + YGR+  D+   +T G RE + RGE         GT+    RRG RP     L +E GV
Sbjct: 318 IHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGV 377

Query: 418 EV 413
           ++
Sbjct: 378 KI 379

>DCR1B_CHICK (Q5QJC3) DNA cross-link repair 1B protein (chSNM1B)|
          Length = 457

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 538 RATRGGRELVKRGEEHRGTVGLRRGGRPRVAVDLALEEGVEV 413
           RA     +L++R  +HR  +G+   G+  + VDLALE G  V
Sbjct: 153 RAALQAAQLIRRHPQHRVVIGVYSLGKEELLVDLALEFGTWV 194

>PGCA_HUMAN (P16112) Aggrecan core protein precursor (Cartilage-specific|
           proteoglycan core protein) (CSPCP) (Chondroitin sulfate
           proteoglycan core protein 1) [Contains: Aggrecan core
           protein 2]
          Length = 2415

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = +2

Query: 341 PSSPTLAFPSSAPQLSLAPQPSVLDFHSLLEREINRNPWAAAAPEPDGAPVLFAALYQLP 520
           PS   + FPS  P  S  P PSV  F S +E   +  P+ +  P P   P      Y   
Sbjct: 786 PSPSEVPFPSEEPSPSEEPFPSVRPFPS-VELFPSEEPFPSKEPSPSEEPSASEEPYTPS 844

Query: 521 PP 526
           PP
Sbjct: 845 PP 846

>NTRY_AZOCA (Q04850) Nitrogen regulation protein ntrY (EC 2.7.13.3)|
          Length = 771

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 490 RGTVGLRRGGRPRV-AVDLALEEGVEVEHGWL 398
           +G + L R GR RV AV +  E+  E EHGW+
Sbjct: 456 QGNITLTRDGRERVFAVRVTTEQSPEAEHGWV 487

>MRAW_RALSO (Q8XVH9) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 319

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +2

Query: 317 LRAHLRGTPSSPTLAFPSSAPQLSLAPQPSVLDFHSLLEREINRNPWAAAAPEPDGAPVL 496
           LR H+    +       S+  +L    +  V+ FHSL +R + R   A A PE   AP +
Sbjct: 215 LRIHVNQELADLETGLKSAFERLEQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPEM 274

Query: 497 FAA---LYQLPPP 526
             A    ++LP P
Sbjct: 275 RRAPLRAHELPAP 287

>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1|
           (Rab3-interacting molecule 1) (RIM 1)
          Length = 1615

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +3

Query: 30  AIPRQDTDTTDEAPHHRSIAEPNWQTRMPTRRPAVAAWTPGPARRRGAPALCAARSTAG 206
           A+  QDT T     H    AEP+ Q   P ++ A  + +  P  R+ AP L       G
Sbjct: 249 AVSSQDTATPGAPLHRNKGAEPSQQALGPEQKQASRSRSEPPRERKKAPGLSEQNGKGG 307

>DLG2_BRARE (Q5PYH7) Discs large homolog 2 (Postsynaptic density protein 93)|
           (PSD-93)
          Length = 881

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +2

Query: 311 PVLRAHLRGTPSSPTLAFPSSAPQLSLAPQPSVLDFHSLLEREINRNP 454
           P +  H+    ++ TL + SS P +S   + S L  H L E +INRNP
Sbjct: 356 PAMENHISSPGNNGTLEYKSSLPPISPG-RYSPLPKHLLGEEDINRNP 402

>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore|
           membrane protein of 121 kDa) (P145)
          Length = 1229

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 338 TPSSPTL-AFPSSAPQLSLAPQPSVLDFHSLLEREINRNPWAAAAPEPDGAPVLFAALYQ 514
           T + PTL A  ++ PQ + AP P+     S L    N +P + AAP    A  +F  ++ 
Sbjct: 653 TKAPPTLQAETATKPQATSAPSPAPKQ--SFLFGTQNTSPSSPAAPAASSASPMFKPIFT 710

Query: 515 LPP 523
            PP
Sbjct: 711 APP 713

>RPGR1_MOUSE (Q9EPQ2) X-linked retinitis pigmentosa GTPase regulator-interacting|
           protein 1 (RPGR-interacting protein 1)
          Length = 1331

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 380 QLSLAPQPSVLDFHSLLEREINRNPWAAAAPEPDGAP 490
           Q S   QP +     L E E  R PW +A+P P   P
Sbjct: 78  QRSTTTQPDLRTLAVLQEPERRRRPWVSASPSPSAPP 114

>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)|
           (Protein kinase with no lysine 4) (Protein kinase,
           lysine-deficient 4)
          Length = 1243

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +2

Query: 335 GTPSSPTLAFPSSAPQLSLAPQPSVLDFHSLLEREINRNPWAAAAPEPDGAPVLFAA 505
           GTP SP   FP ++P    +P P      S +  +++ NP    +P P  +P+ F++
Sbjct: 820 GTPISPGPIFPITSPPCHPSPSP-----FSPISSQVSSNP----SPHPTSSPLPFSS 867

>TOPB1_HUMAN (Q92547) DNA topoisomerase 2-binding protein 1 (DNA topoisomerase|
            II-binding protein 1) (DNA topoisomerase IIbeta-binding
            protein 1) (TopBP1)
          Length = 1522

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 311  PVLRAHLRGTPSSPTLAFPSSAPQLSLAPQPSVL 412
            P+  +HL  TP +P++AFP + P ++  P+  ++
Sbjct: 1222 PIKDSHLIPTPQAPSIAFPLANPPVAPHPREKII 1255

>KS6AA_CHICK (P18652) Ribosomal protein S6 kinase 2 alpha (EC 2.7.11.1)|
           (Ribosomal protein S6 kinase II alpha) (S6KII-alpha)
           (P90-RSK) (MAP kinase-activated protein kinase 1)
           (MAPK-activated protein kinase 1) (MAPKAP kinase 1)
           (MAPKAPK-1)
          Length = 752

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
 Frame = +2

Query: 314 VLRAHLRGTPSSPTLAFPSSAPQLSLAPQPSVLDFHSLLEREINRNPWAAAAPEPDGAPV 493
           +LRA  +  P++   + P  A ++   P  S +D++ L  REI + P+  A  +PD    
Sbjct: 310 LLRALFKRNPANRLGSGPDGAEEIKRHPFYSTIDWNKLYRREI-KPPFKPAVGQPDDTFY 368

Query: 494 LFAALYQ--------LPPPAGGAALF 547
                          +PP AG   LF
Sbjct: 369 FDTEFTSRTPKDSPGIPPSAGAHQLF 394

>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)|
          Length = 640

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 23/67 (34%), Positives = 29/67 (43%)
 Frame = +2

Query: 341 PSSPTLAFPSSAPQLSLAPQPSVLDFHSLLEREINRNPWAAAAPEPDGAPVLFAALYQLP 520
           P  P    P  AP LSL P P   +  S     + R   + AA   +GAP    +  Q+P
Sbjct: 469 PPPPRAGPPRMAPPLSLFPPPLNPNVLSAPPSIVPRQK-SPAASSNEGAP--SGSALQMP 525

Query: 521 PPAGGAA 541
           PP G  A
Sbjct: 526 PPPGTTA 532

>CEP57_HUMAN (Q86XR8) Centrosomal protein of 57 kDa (Cep57 protein)|
           (Testis-specific protein 57) (Translokin)
           (FGF2-interacting protein)
          Length = 500

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 311 PVLRAHLRGTPSSPTLAFPSSAPQLSLAPQPSVLDFHSLLERE 439
           P L + LR +PS PTLA+P S  +   +   ++ D    LE E
Sbjct: 44  PFLNSDLRRSPSKPTLAYPESNSRAIFSALKNLQDKIRRLELE 86

>BLAC_STRCE (Q06650) Beta-lactamase precursor (EC 3.5.2.6) (Penicillinase)|
          Length = 311

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +2

Query: 458 AAAAPEPDGAPVLFAALY---QLPPPAGGAALFILIHTAVCDRAA 583
           AA A  PDGAPVL  AL     LP   G   L I + T + +  A
Sbjct: 265 AAIAWTPDGAPVLLTALTHKPSLPTAPGDTPLIIKLATVLSEAVA 309

>MDC1_MOUSE (Q5PSV9) Mediator of DNA damage checkpoint protein 1|
          Length = 1707

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 15   HAKCRAIPRQDTDTTDEAPHHRSIAEPNWQTRMPTRRPAVAAWTPGPARRR 167
            H K    PR+ +  T  +PH  +  +PN  T  PT +PA +  T  P R R
Sbjct: 1001 HTKPNVRPRRSSRMTP-SPHSSAALKPN--TTCPTNQPAASRPTSRPTRGR 1048


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,976,725
Number of Sequences: 219361
Number of extensions: 1325966
Number of successful extensions: 5709
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5692
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)