>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0005P21, complete sequence
Length = 147381
Score = 153 bits (77), Expect = 7e-34
Identities = 95/101 (94%)
Strand = Plus / Plus
Query: 110 gatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacg 169
|||||||||||| |||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct: 63231 gatgccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacg 63290
Query: 170 tccatggggctccgctgcgccgtcaagctcggcatcccgac 210
|||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 63291 tccatgggcctccgctgcgccgtcgagctcggcatcccgac 63331
Score = 131 bits (66), Expect = 3e-27
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 98 gaggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctc 157
|||||||||||||| || ||||||||||| || |||||||| ||||||||||||| ||||
Sbjct: 118915 gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 118974
Query: 158 tactacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
||||||||||| |||| ||| |||||||||||| ||||||| ||||||||
Sbjct: 118975 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccc 119024
Score = 117 bits (59), Expect = 4e-23
Identities = 77/83 (92%)
Strand = Plus / Minus
Query: 125 caggctcaggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgc 184
||||| |||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct: 131497 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 131438
Query: 185 tgcgccgtcaagctcggcatccc 207
|||||||||||||||||||||||
Sbjct: 131437 tgcgccgtcaagctcggcatccc 131415
Score = 103 bits (52), Expect = 6e-19
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 425 caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 484
||||||||||||||||||||||||||||||| |||||||| ||||||| | || || |||
Sbjct: 119239 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 119298
Query: 485 ctggggatggctgagtggttcaagaaggacgt 516
|||||| ||| |||||||||| |||||||||
Sbjct: 119299 ctggggctggacgagtggttcaggaaggacgt 119330
Score = 60.0 bits (30), Expect = 8e-06
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 262 gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 311
||||||| ||||||| || ||||||||||||||| ||||||| |||||||
Sbjct: 119079 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 119128
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 153 bits (77), Expect = 7e-34
Identities = 95/101 (94%)
Strand = Plus / Minus
Query: 110 gatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacg 169
|||||||||||| |||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct: 11550557 gatgccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacg 11550498
Query: 170 tccatggggctccgctgcgccgtcaagctcggcatcccgac 210
|||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 11550497 tccatgggcctccgctgcgccgtcgagctcggcatcccgac 11550457
Score = 131 bits (66), Expect = 3e-27
Identities = 99/110 (90%)
Strand = Plus / Minus
Query: 98 gaggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctc 157
|||||||||||||| || ||||||||||| || |||||||| ||||||||||||| ||||
Sbjct: 11494873 gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 11494814
Query: 158 tactacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
||||||||||| |||| ||| |||||||||||| ||||||| ||||||||
Sbjct: 11494813 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccc 11494764
Score = 121 bits (61), Expect = 3e-24
Identities = 97/109 (88%)
Strand = Plus / Minus
Query: 99 aggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctct 158
|||||||||| || || ||||||||||| || ||||||||||| |||||||||| | |||
Sbjct: 7139018 aggttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttct 7138959
Query: 159 actacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
|||||||||| |||||| |||||||||||||| |||||||||||||||
Sbjct: 7138958 cctacctcacggccatggcgctccgctgcgccgccaagctcggcatccc 7138910
Score = 117 bits (59), Expect = 4e-23
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 125 caggctcaggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgc 184
||||| |||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct: 11482291 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 11482350
Query: 185 tgcgccgtcaagctcggcatccc 207
|||||||||||||||||||||||
Sbjct: 11482351 tgcgccgtcaagctcggcatccc 11482373
Score = 113 bits (57), Expect = 6e-22
Identities = 84/93 (90%)
Strand = Plus / Minus
Query: 115 cgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccat 174
|||||||||||| || |||||||||||||||||||||| |||||||| | ||||||||||
Sbjct: 11331656 cgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccat 11331597
Query: 175 ggggctccgctgcgccgtcaagctcggcatccc 207
|| | ||| |||||||||||||||||||||||
Sbjct: 11331596 ggcgttccagtgcgccgtcaagctcggcatccc 11331564
Score = 103 bits (52), Expect = 6e-19
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 425 caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 484
||||||||||||||||||||||||||||||| |||||||| ||||||| | || || |||
Sbjct: 11494549 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 11494490
Query: 485 ctggggatggctgagtggttcaagaaggacgt 516
|||||| ||| |||||||||| |||||||||
Sbjct: 11494489 ctggggctggacgagtggttcaggaaggacgt 11494458
Score = 97.6 bits (49), Expect = 4e-17
Identities = 181/225 (80%)
Strand = Plus / Minus
Query: 115 cgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccat 174
|||||||||||| || ||||||||| ||| |||||||| |||||||| | ||||||||||
Sbjct: 11355304 cgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccat 11355245
Query: 175 ggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcacaacctcggcggggt 234
|| | | | ||||||||||||||||||||||| || || || ||| | ||||||
Sbjct: 11355244 ggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgccggcggcac 11355185
Query: 235 cacctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcct 294
| |||||||||||||||| | |||| || ||| ||||| | ||||| ||||||||
Sbjct: 11355184 cgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctcccgttcct 11355125
Query: 295 cggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgc 339
| ||||||| ||||| |||||||| ||| ||||||||||||||
Sbjct: 11355124 ccgccgcctcatgcggctgctggtcaactcgggcgtcttcgccgc 11355080
Score = 91.7 bits (46), Expect = 2e-15
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 131 caggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgctgcgcc 190
|||||||| ||||||||||||||||||| ||||||||| |||||| ||||| ||||||
Sbjct: 11303032 caggccgagctgtggcgccacaccctctcctacctcacctccatgactctccggtgcgcc 11302973
Query: 191 gtcaagctcggcatcccgacggcgatgcacaacctcggcggggtcacctcgctgcccgac 250
||| | ||||||||||| || || || ||| || |||||| | | ||||||||||||||
Sbjct: 11302972 gtccacctcggcatccccaccgccatccaccgccacggcggcgccgcctcgctgcccgac 11302913
Query: 251 ct 252
||
Sbjct: 11302912 ct 11302911
Score = 61.9 bits (31), Expect = 2e-06
Identities = 184/235 (78%)
Strand = Plus / Minus
Query: 116 gagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccatg 175
||||||||||| || |||||||| || |||||||||| ||||| |||| ||||||| ||
Sbjct: 11439601 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacgtctctg 11439542
Query: 176 gggctccgctgcgccgtcaagctcggcatcccgacggcgatgcacaacctcggcggggtc 235
| |||| || | | ||||||| |||||||| || || || ||| | |||||| | |
Sbjct: 11439541 agtctccaatgtgtcatcaagcttggcatccccaccgccatccaccgcgccggcggcgcc 11439482
Query: 236 acctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctc 295
| |||||||||||||||| ||| |||||| ||||| | ||||| |||||||||
Sbjct: 11439481 gcgtcgctgcccgacctggttaccgctctgtccctcccgccgtccaagctaccgttcctc 11439422
Query: 296 ggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccggcggcacca 350
||||||| ||||| ||||||| ||| |||||||||||||||| || |||||
Sbjct: 11439421 cgccgcctcatgcggctgctggtccactccggcgtcttcgccgccgacgacacca 11439367
Score = 60.0 bits (30), Expect = 8e-06
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 262 gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 311
||||||| ||||||| || ||||||||||||||| ||||||| |||||||
Sbjct: 11494709 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 11494660
Score = 42.1 bits (21), Expect = 2.0
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 235 cacctcgctgcccgacctggc 255
|||||||||||||||||||||
Sbjct: 15679519 cacctcgctgcccgacctggc 15679539
Score = 42.1 bits (21), Expect = 2.0
Identities = 84/105 (80%)
Strand = Plus / Minus
Query: 237 cctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctcg 296
|||||||||||||||| | |||| |||||| ||||| | ||||| || ||||||
Sbjct: 11331534 cctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctcccattcctcc 11331475
Query: 297 gccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccg 341
||||||| ||||| ||||||| ||| ||||||||||||||||
Sbjct: 11331474 gccgcctcatgcggctgctggtccactcgggcgtcttcgccgccg 11331430
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 153 bits (77), Expect = 7e-34
Identities = 95/101 (94%)
Strand = Plus / Minus
Query: 110 gatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacg 169
|||||||||||| |||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct: 11629746 gatgccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacg 11629687
Query: 170 tccatggggctccgctgcgccgtcaagctcggcatcccgac 210
|||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 11629686 tccatgggcctccgctgcgccgtcgagctcggcatcccgac 11629646
Score = 131 bits (66), Expect = 3e-27
Identities = 99/110 (90%)
Strand = Plus / Minus
Query: 98 gaggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctc 157
|||||||||||||| || ||||||||||| || |||||||| ||||||||||||| ||||
Sbjct: 11574062 gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 11574003
Query: 158 tactacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
||||||||||| |||| ||| |||||||||||| ||||||| ||||||||
Sbjct: 11574002 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccc 11573953
Score = 121 bits (61), Expect = 3e-24
Identities = 97/109 (88%)
Strand = Plus / Minus
Query: 99 aggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctct 158
|||||||||| || || ||||||||||| || ||||||||||| |||||||||| | |||
Sbjct: 7204989 aggttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttct 7204930
Query: 159 actacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
|||||||||| |||||| |||||||||||||| |||||||||||||||
Sbjct: 7204929 cctacctcacggccatggcgctccgctgcgccgccaagctcggcatccc 7204881
Score = 117 bits (59), Expect = 4e-23
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 125 caggctcaggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgc 184
||||| |||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct: 11561480 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 11561539
Query: 185 tgcgccgtcaagctcggcatccc 207
|||||||||||||||||||||||
Sbjct: 11561540 tgcgccgtcaagctcggcatccc 11561562
Score = 113 bits (57), Expect = 6e-22
Identities = 84/93 (90%)
Strand = Plus / Minus
Query: 115 cgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccat 174
|||||||||||| || |||||||||||||||||||||| |||||||| | ||||||||||
Sbjct: 11410845 cgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccat 11410786
Query: 175 ggggctccgctgcgccgtcaagctcggcatccc 207
|| | ||| |||||||||||||||||||||||
Sbjct: 11410785 ggcgttccagtgcgccgtcaagctcggcatccc 11410753
Score = 103 bits (52), Expect = 6e-19
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 425 caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 484
||||||||||||||||||||||||||||||| |||||||| ||||||| | || || |||
Sbjct: 11573738 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 11573679
Query: 485 ctggggatggctgagtggttcaagaaggacgt 516
|||||| ||| |||||||||| |||||||||
Sbjct: 11573678 ctggggctggacgagtggttcaggaaggacgt 11573647
Score = 97.6 bits (49), Expect = 4e-17
Identities = 181/225 (80%)
Strand = Plus / Minus
Query: 115 cgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccat 174
|||||||||||| || ||||||||| ||| |||||||| |||||||| | ||||||||||
Sbjct: 11434493 cgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccat 11434434
Query: 175 ggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcacaacctcggcggggt 234
|| | | | ||||||||||||||||||||||| || || || ||| | ||||||
Sbjct: 11434433 ggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgccggcggcac 11434374
Query: 235 cacctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcct 294
| |||||||||||||||| | |||| || ||| ||||| | ||||| ||||||||
Sbjct: 11434373 cgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctcccgttcct 11434314
Query: 295 cggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgc 339
| ||||||| ||||| |||||||| ||| ||||||||||||||
Sbjct: 11434313 ccgccgcctcatgcggctgctggtcaactcgggcgtcttcgccgc 11434269
Score = 91.7 bits (46), Expect = 2e-15
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 131 caggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgctgcgcc 190
|||||||| ||||||||||||||||||| ||||||||| |||||| ||||| ||||||
Sbjct: 11382221 caggccgagctgtggcgccacaccctctcctacctcacctccatgactctccggtgcgcc 11382162
Query: 191 gtcaagctcggcatcccgacggcgatgcacaacctcggcggggtcacctcgctgcccgac 250
||| | ||||||||||| || || || ||| || |||||| | | ||||||||||||||
Sbjct: 11382161 gtccacctcggcatccccaccgccatccaccgccacggcggcgccgcctcgctgcccgac 11382102
Query: 251 ct 252
||
Sbjct: 11382101 ct 11382100
Score = 61.9 bits (31), Expect = 2e-06
Identities = 184/235 (78%)
Strand = Plus / Minus
Query: 116 gagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccatg 175
||||||||||| || |||||||| || |||||||||| ||||| |||| ||||||| ||
Sbjct: 11518790 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacgtctctg 11518731
Query: 176 gggctccgctgcgccgtcaagctcggcatcccgacggcgatgcacaacctcggcggggtc 235
| |||| || | | ||||||| |||||||| || || || ||| | |||||| | |
Sbjct: 11518730 agtctccaatgtgtcatcaagcttggcatccccaccgccatccaccgcgccggcggcgcc 11518671
Query: 236 acctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctc 295
| |||||||||||||||| ||| |||||| ||||| | ||||| |||||||||
Sbjct: 11518670 gcgtcgctgcccgacctggttaccgctctgtccctcccgccgtccaagctaccgttcctc 11518611
Query: 296 ggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccggcggcacca 350
||||||| ||||| ||||||| ||| |||||||||||||||| || |||||
Sbjct: 11518610 cgccgcctcatgcggctgctggtccactccggcgtcttcgccgccgacgacacca 11518556
Score = 60.0 bits (30), Expect = 8e-06
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 262 gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 311
||||||| ||||||| || ||||||||||||||| ||||||| |||||||
Sbjct: 11573898 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 11573849
Score = 42.1 bits (21), Expect = 2.0
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 235 cacctcgctgcccgacctggc 255
|||||||||||||||||||||
Sbjct: 15766896 cacctcgctgcccgacctggc 15766916
Score = 42.1 bits (21), Expect = 2.0
Identities = 84/105 (80%)
Strand = Plus / Minus
Query: 237 cctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctcg 296
|||||||||||||||| | |||| |||||| ||||| | ||||| || ||||||
Sbjct: 11410723 cctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctcccattcctcc 11410664
Query: 297 gccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccg 341
||||||| ||||| ||||||| ||| ||||||||||||||||
Sbjct: 11410663 gccgcctcatgcggctgctggtccactcgggcgtcttcgccgccg 11410619
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
Length = 128418
Score = 131 bits (66), Expect = 3e-27
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 98 gaggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctc 157
|||||||||||||| || ||||||||||| || |||||||| ||||||||||||| ||||
Sbjct: 4664 gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 4723
Query: 158 tactacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
||||||||||| |||| ||| |||||||||||| ||||||| ||||||||
Sbjct: 4724 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccc 4773
Score = 117 bits (59), Expect = 4e-23
Identities = 77/83 (92%)
Strand = Plus / Minus
Query: 125 caggctcaggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgc 184
||||| |||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct: 17246 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 17187
Query: 185 tgcgccgtcaagctcggcatccc 207
|||||||||||||||||||||||
Sbjct: 17186 tgcgccgtcaagctcggcatccc 17164
Score = 103 bits (52), Expect = 6e-19
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 425 caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 484
||||||||||||||||||||||||||||||| |||||||| ||||||| | || || |||
Sbjct: 4988 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 5047
Query: 485 ctggggatggctgagtggttcaagaaggacgt 516
|||||| ||| |||||||||| |||||||||
Sbjct: 5048 ctggggctggacgagtggttcaggaaggacgt 5079
Score = 61.9 bits (31), Expect = 2e-06
Identities = 184/235 (78%)
Strand = Plus / Plus
Query: 116 gagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccatg 175
||||||||||| || |||||||| || |||||||||| ||||| |||| ||||||| ||
Sbjct: 59936 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacgtctctg 59995
Query: 176 gggctccgctgcgccgtcaagctcggcatcccgacggcgatgcacaacctcggcggggtc 235
| |||| || | | ||||||| |||||||| || || || ||| | |||||| | |
Sbjct: 59996 agtctccaatgtgtcatcaagcttggcatccccaccgccatccaccgcgccggcggcgcc 60055
Query: 236 acctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctc 295
| |||||||||||||||| ||| |||||| ||||| | ||||| |||||||||
Sbjct: 60056 gcgtcgctgcccgacctggttaccgctctgtccctcccgccgtccaagctaccgttcctc 60115
Query: 296 ggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccggcggcacca 350
||||||| ||||| ||||||| ||| |||||||||||||||| || |||||
Sbjct: 60116 cgccgcctcatgcggctgctggtccactccggcgtcttcgccgccgacgacacca 60170
Score = 60.0 bits (30), Expect = 8e-06
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 262 gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 311
||||||| ||||||| || ||||||||||||||| ||||||| |||||||
Sbjct: 4828 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 4877
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
Length = 4829781
Score = 40.1 bits (20), Expect = 7.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 283 gcagccgttcctcggccgcc 302
||||||||||||||||||||
Sbjct: 3087139 gcagccgttcctcggccgcc 3087158
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,433,182
Number of Sequences: 3902068
Number of extensions: 3433182
Number of successful extensions: 69797
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68826
Number of HSP's gapped (non-prelim): 962
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)