ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart39d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete... 527 e-146
2gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 153 7e-34
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 153 7e-34
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 153 7e-34
5gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 131 3e-27
6dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 3e-27
7dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 3e-27
8gb|AY107519.1| Zea mays PCO078033 mRNA sequence 127 4e-26
9gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
10gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
11dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clon... 117 4e-23
12gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 113 6e-22
13dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 6e-22
14ref|NM_191262.1| Oryza sativa (japonica cultivar-group), predic... 50 0.008
15dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
16dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
17dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
18emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete ... 44 0.50
19gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 2.0
20gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
21emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 42 2.0
22gb|AY701054.2| Streptomyces rimosus rimocidin synthase (rms) gen... 42 2.0
23ref|XM_478005.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.8
24ref|XM_477999.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.8
25gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 7.8
26ref|XM_755216.1| Ustilago maydis 521 hypothetical protein (UM041... 40 7.8
27ref|XM_744633.1| Aspergillus fumigatus Af293 hypothetical protei... 40 7.8
28ref|XM_816099.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 7.8
29emb|BX640412.1| Bordetella pertussis strain Tohama I, complete g... 40 7.8
30gb|AE005746.1| Caulobacter crescentus CB15 section 72 of 359 of ... 40 7.8
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
32dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 7.8
33dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
34dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
35gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 7.8

>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score =  527 bits (266), Expect = e-146
 Identities = 447/504 (88%), Gaps = 5/504 (0%)
 Strand = Plus / Plus

                                                                       
Query: 68  agagcaatggccgcccaggtaccggcgatcgaggttcccactgatgccgagctgctgcag 127
           ||||||||||||||||||| ||||| ||| ||||| ||||  ||||||||||| |  || 
Sbjct: 29  agagcaatggccgcccaggcaccggtgatggaggtccccaacgatgccgagctcc--caa 86

                                                                       
Query: 128 gctcaggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgctgc 187
           || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 87  gcacaggccgacctgtggcgccacaccctttactacctcacgtccatggggctccgctgc 146

                                                                       
Query: 188 gccgtcaagctcggcatcccgacggcgatgcacaacctcggcggggtcacctcgctgccc 247
           ||||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||||
Sbjct: 147 gccgtcaagctcggcatcccgacggcgatccacaacctcggtggcgtctcctcgctgccc 206

                                                                       
Query: 248 gacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctcggccgcctgatg 307
           |||||||| || | ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 207 gacctggcagctgcgctgtccatcccggcaagcaagcagccgttcctcggccgtcttatg 266

                                                                       
Query: 308 cgcgcgctggtcacctcaggcgtcttcgccgccggcggcaccaacaactccggggcggag 367
           ||||||||||||||||||||||||||||||  ||  || |  ||| ||||  ||||||| 
Sbjct: 267 cgcgcgctggtcacctcaggcgtcttcgccaacg--ggaaagaacgactcttgggcgga- 323

                                                                       
Query: 368 ctcttccgcctcaacccactctcccgtgtcctggtggatggtgtcgatgcggaagaacac 427
           ||||||||||||||||| || |||||  ||||||| || || ||||  ||||| || |||
Sbjct: 324 ctcttccgcctcaaccccctgtcccgcatcctggttgagggcgtcgtcgcggaggagcac 383

                                                                       
Query: 428 cacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcgctg 487
           |||||||||||||||||||| ||||| ||||| || | ||||||||||||||| ||||||
Sbjct: 384 cacagccagacgtccttcgtactcgctgggacttcccggcactacatggaagctgcgctg 443

                                                                       
Query: 488 gggatggctgagtggttcaagaaggacgtcaccgggccggtgccatcggtgttcgaggac 547
           ||||||||||| |||||||||||||||| ||| || || |||||| ||||||||||||||
Sbjct: 444 gggatggctgactggttcaagaaggacgccactggacccgtgccaacggtgttcgaggac 503

                                   
Query: 548 gtgcatagcgcgtcgctcttcgac 571
           ||||| |||||||| |||||||||
Sbjct: 504 gtgcacagcgcgtccctcttcgac 527



to top

>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0005P21, complete sequence
          Length = 147381

 Score =  153 bits (77), Expect = 7e-34
 Identities = 95/101 (94%)
 Strand = Plus / Plus

                                                                         
Query: 110   gatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacg 169
             |||||||||||| |||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct: 63231 gatgccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacg 63290

                                                      
Query: 170   tccatggggctccgctgcgccgtcaagctcggcatcccgac 210
             |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 63291 tccatgggcctccgctgcgccgtcgagctcggcatcccgac 63331



 Score =  131 bits (66), Expect = 3e-27
 Identities = 99/110 (90%)
 Strand = Plus / Plus

                                                                          
Query: 98     gaggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctc 157
              |||||||||||||| || ||||||||||| || |||||||| ||||||||||||| ||||
Sbjct: 118915 gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 118974

                                                                
Query: 158    tactacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
              ||||||||||| |||| ||| |||||||||||| ||||||| ||||||||
Sbjct: 118975 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccc 119024



 Score =  117 bits (59), Expect = 4e-23
 Identities = 77/83 (92%)
 Strand = Plus / Minus

                                                                          
Query: 125    caggctcaggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgc 184
              ||||| |||||| ||||||||||||||| ||||||||||||||| ||||||| |||||| 
Sbjct: 131497 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 131438

                                     
Query: 185    tgcgccgtcaagctcggcatccc 207
              |||||||||||||||||||||||
Sbjct: 131437 tgcgccgtcaagctcggcatccc 131415



 Score =  103 bits (52), Expect = 6e-19
 Identities = 82/92 (89%)
 Strand = Plus / Plus

                                                                          
Query: 425    caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 484
              ||||||||||||||||||||||||||||||| |||||||| ||||||| | || || |||
Sbjct: 119239 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 119298

                                              
Query: 485    ctggggatggctgagtggttcaagaaggacgt 516
              |||||| |||  |||||||||| |||||||||
Sbjct: 119299 ctggggctggacgagtggttcaggaaggacgt 119330



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                
Query: 262    gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 311
              ||||||| ||||||| || ||||||||||||||| ||||||| |||||||
Sbjct: 119079 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 119128



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  153 bits (77), Expect = 7e-34
 Identities = 95/101 (94%)
 Strand = Plus / Minus

                                                                            
Query: 110      gatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacg 169
                |||||||||||| |||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct: 11550557 gatgccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacg 11550498

                                                         
Query: 170      tccatggggctccgctgcgccgtcaagctcggcatcccgac 210
                |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 11550497 tccatgggcctccgctgcgccgtcgagctcggcatcccgac 11550457



 Score =  131 bits (66), Expect = 3e-27
 Identities = 99/110 (90%)
 Strand = Plus / Minus

                                                                            
Query: 98       gaggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctc 157
                |||||||||||||| || ||||||||||| || |||||||| ||||||||||||| ||||
Sbjct: 11494873 gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 11494814

                                                                  
Query: 158      tactacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
                ||||||||||| |||| ||| |||||||||||| ||||||| ||||||||
Sbjct: 11494813 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccc 11494764



 Score =  121 bits (61), Expect = 3e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                           
Query: 99      aggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctct 158
               |||||||||| || || ||||||||||| || ||||||||||| |||||||||| | |||
Sbjct: 7139018 aggttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttct 7138959

                                                                
Query: 159     actacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
                |||||||||| |||||| |||||||||||||| |||||||||||||||
Sbjct: 7138958 cctacctcacggccatggcgctccgctgcgccgccaagctcggcatccc 7138910



 Score =  117 bits (59), Expect = 4e-23
 Identities = 77/83 (92%)
 Strand = Plus / Plus

                                                                            
Query: 125      caggctcaggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgc 184
                ||||| |||||| ||||||||||||||| ||||||||||||||| ||||||| |||||| 
Sbjct: 11482291 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 11482350

                                       
Query: 185      tgcgccgtcaagctcggcatccc 207
                |||||||||||||||||||||||
Sbjct: 11482351 tgcgccgtcaagctcggcatccc 11482373



 Score =  113 bits (57), Expect = 6e-22
 Identities = 84/93 (90%)
 Strand = Plus / Minus

                                                                            
Query: 115      cgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccat 174
                |||||||||||| || |||||||||||||||||||||| |||||||| | ||||||||||
Sbjct: 11331656 cgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccat 11331597

                                                 
Query: 175      ggggctccgctgcgccgtcaagctcggcatccc 207
                || | |||  |||||||||||||||||||||||
Sbjct: 11331596 ggcgttccagtgcgccgtcaagctcggcatccc 11331564



 Score =  103 bits (52), Expect = 6e-19
 Identities = 82/92 (89%)
 Strand = Plus / Minus

                                                                            
Query: 425      caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 484
                ||||||||||||||||||||||||||||||| |||||||| ||||||| | || || |||
Sbjct: 11494549 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 11494490

                                                
Query: 485      ctggggatggctgagtggttcaagaaggacgt 516
                |||||| |||  |||||||||| |||||||||
Sbjct: 11494489 ctggggctggacgagtggttcaggaaggacgt 11494458



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 181/225 (80%)
 Strand = Plus / Minus

                                                                            
Query: 115      cgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccat 174
                |||||||||||| || ||||||||| ||| |||||||| |||||||| | ||||||||||
Sbjct: 11355304 cgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccat 11355245

                                                                            
Query: 175      ggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcacaacctcggcggggt 234
                || | | |  ||||||||||||||||||||||| || || || |||  |  ||||||   
Sbjct: 11355244 ggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgccggcggcac 11355185

                                                                            
Query: 235      cacctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcct 294
                | |||||||||||||||| |  ||||  || ||| ||||| |   |||||  ||||||||
Sbjct: 11355184 cgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctcccgttcct 11355125

                                                             
Query: 295      cggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgc 339
                | ||||||| |||||   |||||||| ||| ||||||||||||||
Sbjct: 11355124 ccgccgcctcatgcggctgctggtcaactcgggcgtcttcgccgc 11355080



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                            
Query: 131      caggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgctgcgcc 190
                |||||||| ||||||||||||||||||| ||||||||| ||||||   ||||| ||||||
Sbjct: 11303032 caggccgagctgtggcgccacaccctctcctacctcacctccatgactctccggtgcgcc 11302973

                                                                            
Query: 191      gtcaagctcggcatcccgacggcgatgcacaacctcggcggggtcacctcgctgcccgac 250
                ||| | ||||||||||| || || || |||  || |||||| | | ||||||||||||||
Sbjct: 11302972 gtccacctcggcatccccaccgccatccaccgccacggcggcgccgcctcgctgcccgac 11302913

                  
Query: 251      ct 252
                ||
Sbjct: 11302912 ct 11302911



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 184/235 (78%)
 Strand = Plus / Minus

                                                                            
Query: 116      gagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccatg 175
                ||||||||||| || |||||||| || |||||||||| ||||| |||| |||||||  ||
Sbjct: 11439601 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacgtctctg 11439542

                                                                            
Query: 176      gggctccgctgcgccgtcaagctcggcatcccgacggcgatgcacaacctcggcggggtc 235
                 | ||||  || | | ||||||| |||||||| || || || |||  |  |||||| | |
Sbjct: 11439541 agtctccaatgtgtcatcaagcttggcatccccaccgccatccaccgcgccggcggcgcc 11439482

                                                                            
Query: 236      acctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctc 295
                 | ||||||||||||||||   |||  |||||| ||||| |   |||||  |||||||||
Sbjct: 11439481 gcgtcgctgcccgacctggttaccgctctgtccctcccgccgtccaagctaccgttcctc 11439422

                                                                       
Query: 296      ggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccggcggcacca 350
                 ||||||| |||||   |||||||  ||| |||||||||||||||| || |||||
Sbjct: 11439421 cgccgcctcatgcggctgctggtccactccggcgtcttcgccgccgacgacacca 11439367



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 262      gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 311
                ||||||| ||||||| || ||||||||||||||| ||||||| |||||||
Sbjct: 11494709 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 11494660



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 235      cacctcgctgcccgacctggc 255
                |||||||||||||||||||||
Sbjct: 15679519 cacctcgctgcccgacctggc 15679539



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 84/105 (80%)
 Strand = Plus / Minus

                                                                            
Query: 237      cctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctcg 296
                |||||||||||||||| |  ||||  |||||| ||||| |   |||||  || |||||| 
Sbjct: 11331534 cctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctcccattcctcc 11331475

                                                             
Query: 297      gccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccg 341
                ||||||| |||||   |||||||  ||| ||||||||||||||||
Sbjct: 11331474 gccgcctcatgcggctgctggtccactcgggcgtcttcgccgccg 11331430



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  153 bits (77), Expect = 7e-34
 Identities = 95/101 (94%)
 Strand = Plus / Minus

                                                                            
Query: 110      gatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacg 169
                |||||||||||| |||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct: 11629746 gatgccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacg 11629687

                                                         
Query: 170      tccatggggctccgctgcgccgtcaagctcggcatcccgac 210
                |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 11629686 tccatgggcctccgctgcgccgtcgagctcggcatcccgac 11629646



 Score =  131 bits (66), Expect = 3e-27
 Identities = 99/110 (90%)
 Strand = Plus / Minus

                                                                            
Query: 98       gaggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctc 157
                |||||||||||||| || ||||||||||| || |||||||| ||||||||||||| ||||
Sbjct: 11574062 gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 11574003

                                                                  
Query: 158      tactacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
                ||||||||||| |||| ||| |||||||||||| ||||||| ||||||||
Sbjct: 11574002 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccc 11573953



 Score =  121 bits (61), Expect = 3e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                           
Query: 99      aggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctct 158
               |||||||||| || || ||||||||||| || ||||||||||| |||||||||| | |||
Sbjct: 7204989 aggttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttct 7204930

                                                                
Query: 159     actacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
                |||||||||| |||||| |||||||||||||| |||||||||||||||
Sbjct: 7204929 cctacctcacggccatggcgctccgctgcgccgccaagctcggcatccc 7204881



 Score =  117 bits (59), Expect = 4e-23
 Identities = 77/83 (92%)
 Strand = Plus / Plus

                                                                            
Query: 125      caggctcaggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgc 184
                ||||| |||||| ||||||||||||||| ||||||||||||||| ||||||| |||||| 
Sbjct: 11561480 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 11561539

                                       
Query: 185      tgcgccgtcaagctcggcatccc 207
                |||||||||||||||||||||||
Sbjct: 11561540 tgcgccgtcaagctcggcatccc 11561562



 Score =  113 bits (57), Expect = 6e-22
 Identities = 84/93 (90%)
 Strand = Plus / Minus

                                                                            
Query: 115      cgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccat 174
                |||||||||||| || |||||||||||||||||||||| |||||||| | ||||||||||
Sbjct: 11410845 cgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccat 11410786

                                                 
Query: 175      ggggctccgctgcgccgtcaagctcggcatccc 207
                || | |||  |||||||||||||||||||||||
Sbjct: 11410785 ggcgttccagtgcgccgtcaagctcggcatccc 11410753



 Score =  103 bits (52), Expect = 6e-19
 Identities = 82/92 (89%)
 Strand = Plus / Minus

                                                                            
Query: 425      caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 484
                ||||||||||||||||||||||||||||||| |||||||| ||||||| | || || |||
Sbjct: 11573738 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 11573679

                                                
Query: 485      ctggggatggctgagtggttcaagaaggacgt 516
                |||||| |||  |||||||||| |||||||||
Sbjct: 11573678 ctggggctggacgagtggttcaggaaggacgt 11573647



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 181/225 (80%)
 Strand = Plus / Minus

                                                                            
Query: 115      cgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccat 174
                |||||||||||| || ||||||||| ||| |||||||| |||||||| | ||||||||||
Sbjct: 11434493 cgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccat 11434434

                                                                            
Query: 175      ggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcacaacctcggcggggt 234
                || | | |  ||||||||||||||||||||||| || || || |||  |  ||||||   
Sbjct: 11434433 ggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgccggcggcac 11434374

                                                                            
Query: 235      cacctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcct 294
                | |||||||||||||||| |  ||||  || ||| ||||| |   |||||  ||||||||
Sbjct: 11434373 cgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctcccgttcct 11434314

                                                             
Query: 295      cggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgc 339
                | ||||||| |||||   |||||||| ||| ||||||||||||||
Sbjct: 11434313 ccgccgcctcatgcggctgctggtcaactcgggcgtcttcgccgc 11434269



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                            
Query: 131      caggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgctgcgcc 190
                |||||||| ||||||||||||||||||| ||||||||| ||||||   ||||| ||||||
Sbjct: 11382221 caggccgagctgtggcgccacaccctctcctacctcacctccatgactctccggtgcgcc 11382162

                                                                            
Query: 191      gtcaagctcggcatcccgacggcgatgcacaacctcggcggggtcacctcgctgcccgac 250
                ||| | ||||||||||| || || || |||  || |||||| | | ||||||||||||||
Sbjct: 11382161 gtccacctcggcatccccaccgccatccaccgccacggcggcgccgcctcgctgcccgac 11382102

                  
Query: 251      ct 252
                ||
Sbjct: 11382101 ct 11382100



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 184/235 (78%)
 Strand = Plus / Minus

                                                                            
Query: 116      gagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccatg 175
                ||||||||||| || |||||||| || |||||||||| ||||| |||| |||||||  ||
Sbjct: 11518790 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacgtctctg 11518731

                                                                            
Query: 176      gggctccgctgcgccgtcaagctcggcatcccgacggcgatgcacaacctcggcggggtc 235
                 | ||||  || | | ||||||| |||||||| || || || |||  |  |||||| | |
Sbjct: 11518730 agtctccaatgtgtcatcaagcttggcatccccaccgccatccaccgcgccggcggcgcc 11518671

                                                                            
Query: 236      acctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctc 295
                 | ||||||||||||||||   |||  |||||| ||||| |   |||||  |||||||||
Sbjct: 11518670 gcgtcgctgcccgacctggttaccgctctgtccctcccgccgtccaagctaccgttcctc 11518611

                                                                       
Query: 296      ggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccggcggcacca 350
                 ||||||| |||||   |||||||  ||| |||||||||||||||| || |||||
Sbjct: 11518610 cgccgcctcatgcggctgctggtccactccggcgtcttcgccgccgacgacacca 11518556



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 262      gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 311
                ||||||| ||||||| || ||||||||||||||| ||||||| |||||||
Sbjct: 11573898 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 11573849



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 235      cacctcgctgcccgacctggc 255
                |||||||||||||||||||||
Sbjct: 15766896 cacctcgctgcccgacctggc 15766916



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 84/105 (80%)
 Strand = Plus / Minus

                                                                            
Query: 237      cctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctcg 296
                |||||||||||||||| |  ||||  |||||| ||||| |   |||||  || |||||| 
Sbjct: 11410723 cctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctcccattcctcc 11410664

                                                             
Query: 297      gccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccg 341
                ||||||| |||||   |||||||  ||| ||||||||||||||||
Sbjct: 11410663 gccgcctcatgcggctgctggtccactcgggcgtcttcgccgccg 11410619



to top

>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score =  131 bits (66), Expect = 3e-27
 Identities = 99/110 (90%)
 Strand = Plus / Plus

                                                                        
Query: 98   gaggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctc 157
            |||||||||||||| || ||||||||||| || |||||||| ||||||||||||| ||||
Sbjct: 4664 gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 4723

                                                              
Query: 158  tactacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
            ||||||||||| |||| ||| |||||||||||| ||||||| ||||||||
Sbjct: 4724 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccc 4773



 Score =  117 bits (59), Expect = 4e-23
 Identities = 77/83 (92%)
 Strand = Plus / Minus

                                                                         
Query: 125   caggctcaggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgc 184
             ||||| |||||| ||||||||||||||| ||||||||||||||| ||||||| |||||| 
Sbjct: 17246 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 17187

                                    
Query: 185   tgcgccgtcaagctcggcatccc 207
             |||||||||||||||||||||||
Sbjct: 17186 tgcgccgtcaagctcggcatccc 17164



 Score =  103 bits (52), Expect = 6e-19
 Identities = 82/92 (89%)
 Strand = Plus / Plus

                                                                        
Query: 425  caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 484
            ||||||||||||||||||||||||||||||| |||||||| ||||||| | || || |||
Sbjct: 4988 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 5047

                                            
Query: 485  ctggggatggctgagtggttcaagaaggacgt 516
            |||||| |||  |||||||||| |||||||||
Sbjct: 5048 ctggggctggacgagtggttcaggaaggacgt 5079



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 184/235 (78%)
 Strand = Plus / Plus

                                                                         
Query: 116   gagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccatg 175
             ||||||||||| || |||||||| || |||||||||| ||||| |||| |||||||  ||
Sbjct: 59936 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacgtctctg 59995

                                                                         
Query: 176   gggctccgctgcgccgtcaagctcggcatcccgacggcgatgcacaacctcggcggggtc 235
              | ||||  || | | ||||||| |||||||| || || || |||  |  |||||| | |
Sbjct: 59996 agtctccaatgtgtcatcaagcttggcatccccaccgccatccaccgcgccggcggcgcc 60055

                                                                         
Query: 236   acctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctc 295
              | ||||||||||||||||   |||  |||||| ||||| |   |||||  |||||||||
Sbjct: 60056 gcgtcgctgcccgacctggttaccgctctgtccctcccgccgtccaagctaccgttcctc 60115

                                                                    
Query: 296   ggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccggcggcacca 350
              ||||||| |||||   |||||||  ||| |||||||||||||||| || |||||
Sbjct: 60116 cgccgcctcatgcggctgctggtccactccggcgtcttcgccgccgacgacacca 60170



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 262  gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 311
            ||||||| ||||||| || ||||||||||||||| ||||||| |||||||
Sbjct: 4828 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 4877



to top

>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
           insert sequence
          Length = 1362

 Score =  131 bits (66), Expect = 3e-27
 Identities = 99/110 (90%)
 Strand = Plus / Plus

                                                                       
Query: 98  gaggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctc 157
           |||||||||||||| || ||||||||||| || |||||||| ||||||||||||| ||||
Sbjct: 75  gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 134

                                                             
Query: 158 tactacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
           ||||||||||| |||| ||| |||||||||||| ||||||| ||||||||
Sbjct: 135 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccc 184



 Score =  103 bits (52), Expect = 6e-19
 Identities = 82/92 (89%)
 Strand = Plus / Plus

                                                                       
Query: 425 caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 484
           ||||||||||||||||||||||||||||||| |||||||| ||||||| | || || |||
Sbjct: 399 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 458

                                           
Query: 485 ctggggatggctgagtggttcaagaaggacgt 516
           |||||| |||  |||||||||| |||||||||
Sbjct: 459 ctggggctggacgagtggttcaggaaggacgt 490



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 262 gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 311
           ||||||| ||||||| || ||||||||||||||| ||||||| |||||||
Sbjct: 239 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 288



to top

>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
           insert sequence
          Length = 1264

 Score =  131 bits (66), Expect = 3e-27
 Identities = 99/110 (90%)
 Strand = Plus / Plus

                                                                       
Query: 98  gaggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctc 157
           |||||||||||||| || ||||||||||| || |||||||| ||||||||||||| ||||
Sbjct: 80  gaggttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctc 139

                                                             
Query: 158 tactacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
           ||||||||||| |||| ||| |||||||||||| ||||||| ||||||||
Sbjct: 140 tactacctcacctccacgggactccgctgcgccatcaagctgggcatccc 189



 Score =  103 bits (52), Expect = 6e-19
 Identities = 82/92 (89%)
 Strand = Plus / Plus

                                                                       
Query: 425 caccacagccagacgtccttcgtgctcgccgggacgtcgccgcactacatggaagccgcg 484
           ||||||||||||||||||||||||||||||| |||||||| ||||||| | || || |||
Sbjct: 404 caccacagccagacgtccttcgtgctcgccgcgacgtcgcggcactacctcgaggcggcg 463

                                           
Query: 485 ctggggatggctgagtggttcaagaaggacgt 516
           |||||| |||  |||||||||| |||||||||
Sbjct: 464 ctggggctggacgagtggttcaggaaggacgt 495



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 262 gctgtccatcccggcaagcaagcagccgttcctcggccgcctgatgcgcg 311
           ||||||| ||||||| || ||||||||||||||| ||||||| |||||||
Sbjct: 244 gctgtccctcccggcgagtaagcagccgttcctccgccgcctcatgcgcg 293



to top

>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score =  127 bits (64), Expect = 4e-26
 Identities = 193/236 (81%)
 Strand = Plus / Plus

                                                                       
Query: 101 gttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctctac 160
           |||||||| || ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 60  gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 119

                                                                       
Query: 161 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcac 220
           ||||| || ||||||| ||||   ||||| ||  |||||  ||||||||| || || |||
Sbjct: 120 tacctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccac 179

                                                                       
Query: 221 aacctcggcggggtcacctcgctgcccgacctggcggccgtgctgtccatcccggcaagc 280
           ||||| ||||||    || ||||||| ||||| | ||||| ||||||| | || ||   |
Sbjct: 180 aacctaggcgggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggcc 239

                                                                   
Query: 281 aagcagccgttcctcggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgc 336
           ||||  ||||||||||| ||| |||||||   ||||||||| || |||||||||||
Sbjct: 240 aagctcccgttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 295



to top

>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score =  121 bits (61), Expect = 3e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                         
Query: 99    aggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctct 158
             |||||||||| || || ||||||||||| || ||||||||||| |||||||||| | |||
Sbjct: 43537 aggttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttct 43596

                                                              
Query: 159   actacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
              |||||||||| |||||| |||||||||||||| |||||||||||||||
Sbjct: 43597 cctacctcacggccatggcgctccgctgcgccgccaagctcggcatccc 43645



to top

>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score =  121 bits (61), Expect = 3e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                         
Query: 99    aggttcccactgatgccgagctgctgcaggctcaggccgacctgtggcgccacaccctct 158
             |||||||||| || || ||||||||||| || ||||||||||| |||||||||| | |||
Sbjct: 52238 aggttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttct 52179

                                                              
Query: 159   actacctcacgtccatggggctccgctgcgccgtcaagctcggcatccc 207
              |||||||||| |||||| |||||||||||||| |||||||||||||||
Sbjct: 52178 cctacctcacggccatggcgctccgctgcgccgccaagctcggcatccc 52130



to top

>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full
           insert sequence
          Length = 1300

 Score =  117 bits (59), Expect = 4e-23
 Identities = 77/83 (92%)
 Strand = Plus / Plus

                                                                       
Query: 125 caggctcaggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgc 184
           ||||| |||||| ||||||||||||||| ||||||||||||||| ||||||| |||||| 
Sbjct: 118 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 177

                                  
Query: 185 tgcgccgtcaagctcggcatccc 207
           |||||||||||||||||||||||
Sbjct: 178 tgcgccgtcaagctcggcatccc 200



to top

>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
              map C53961S, complete sequence
          Length = 175121

 Score =  113 bits (57), Expect = 6e-22
 Identities = 84/93 (90%)
 Strand = Plus / Minus

                                                                          
Query: 115    cgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccat 174
              |||||||||||| || |||||||||||||||||||||| |||||||| | ||||||||||
Sbjct: 118014 cgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccat 117955

                                               
Query: 175    ggggctccgctgcgccgtcaagctcggcatccc 207
              || | |||  |||||||||||||||||||||||
Sbjct: 117954 ggcgttccagtgcgccgtcaagctcggcatccc 117922



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 181/225 (80%)
 Strand = Plus / Minus

                                                                          
Query: 115    cgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccat 174
              |||||||||||| || ||||||||| ||| |||||||| |||||||| | ||||||||||
Sbjct: 141662 cgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccat 141603

                                                                          
Query: 175    ggggctccgctgcgccgtcaagctcggcatcccgacggcgatgcacaacctcggcggggt 234
              || | | |  ||||||||||||||||||||||| || || || |||  |  ||||||   
Sbjct: 141602 ggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgccggcggcac 141543

                                                                          
Query: 235    cacctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcct 294
              | |||||||||||||||| |  ||||  || ||| ||||| |   |||||  ||||||||
Sbjct: 141542 cgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctcccgttcct 141483

                                                           
Query: 295    cggccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgc 339
              | ||||||| |||||   |||||||| ||| ||||||||||||||
Sbjct: 141482 ccgccgcctcatgcggctgctggtcaactcgggcgtcttcgccgc 141438



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 103/122 (84%)
 Strand = Plus / Minus

                                                                         
Query: 131   caggccgacctgtggcgccacaccctctactacctcacgtccatggggctccgctgcgcc 190
             |||||||| ||||||||||||||||||| ||||||||| ||||||   ||||| ||||||
Sbjct: 89390 caggccgagctgtggcgccacaccctctcctacctcacctccatgactctccggtgcgcc 89331

                                                                         
Query: 191   gtcaagctcggcatcccgacggcgatgcacaacctcggcggggtcacctcgctgcccgac 250
             ||| | ||||||||||| || || || |||  || |||||| | | ||||||||||||||
Sbjct: 89330 gtccacctcggcatccccaccgccatccaccgccacggcggcgccgcctcgctgcccgac 89271

               
Query: 251   ct 252
             ||
Sbjct: 89270 ct 89269



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 84/105 (80%)
 Strand = Plus / Minus

                                                                          
Query: 237    cctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctcg 296
              |||||||||||||||| |  ||||  |||||| ||||| |   |||||  || |||||| 
Sbjct: 117892 cctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctcccattcctcc 117833

                                                           
Query: 297    gccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccg 341
              ||||||| |||||   |||||||  ||| ||||||||||||||||
Sbjct: 117832 gccgcctcatgcggctgctggtccactcgggcgtcttcgccgccg 117788



to top

>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
           insert sequence
          Length = 1262

 Score =  113 bits (57), Expect = 6e-22
 Identities = 84/93 (90%)
 Strand = Plus / Plus

                                                                       
Query: 115 cgagctgctgcaggctcaggccgacctgtggcgccacaccctctactacctcacgtccat 174
           |||||||||||| || |||||||||||||||||||||| |||||||| | ||||||||||
Sbjct: 91  cgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccat 150

                                            
Query: 175 ggggctccgctgcgccgtcaagctcggcatccc 207
           || | |||  |||||||||||||||||||||||
Sbjct: 151 ggcgttccagtgcgccgtcaagctcggcatccc 183



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 84/105 (80%)
 Strand = Plus / Plus

                                                                       
Query: 237 cctcgctgcccgacctggcggccgtgctgtccatcccggcaagcaagcagccgttcctcg 296
           |||||||||||||||| |  ||||  |||||| ||||| |   |||||  || |||||| 
Sbjct: 213 cctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctcccattcctcc 272

                                                        
Query: 297 gccgcctgatgcgcgcgctggtcacctcaggcgtcttcgccgccg 341
           ||||||| |||||   |||||||  ||| ||||||||||||||||
Sbjct: 273 gccgcctcatgcggctgctggtccactcgggcgtcttcgccgccg 317



to top

>ref|NM_191262.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1137

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 179 ctccgctgcgccgtcaagctcggcatccc 207
           ||||||||||||||| |||||||||||||
Sbjct: 100 ctccgctgcgccgtcgagctcggcatccc 128



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 179      ctccgctgcgccgtcaagctcggcatccc 207
                ||||||||||||||| |||||||||||||
Sbjct: 31604095 ctccgctgcgccgtcgagctcggcatccc 31604123



to top

>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0503C12
          Length = 147180

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 179   ctccgctgcgccgtcaagctcggcatccc 207
             ||||||||||||||| |||||||||||||
Sbjct: 17827 ctccgctgcgccgtcgagctcggcatccc 17855



to top

>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0435B05
          Length = 150997

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 179    ctccgctgcgccgtcaagctcggcatccc 207
              ||||||||||||||| |||||||||||||
Sbjct: 117118 ctccgctgcgccgtcgagctcggcatccc 117146



to top

>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 229    cggggtcacctcgctgcccgac 250
              ||||||||||||||||||||||
Sbjct: 151509 cggggtcacctcgctgcccgac 151530



to top

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 121    gctgcaggctcaggccgacct 141
              |||||||||||||||||||||
Sbjct: 911044 gctgcaggctcaggccgacct 911064



to top

>gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0027P09, complete sequence
          Length = 171861

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 235   cacctcgctgcccgacctggc 255
             |||||||||||||||||||||
Sbjct: 89200 cacctcgctgcccgacctggc 89220



to top

>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 247    cgacctggcggccgtgctgtc 267
              |||||||||||||||||||||
Sbjct: 278847 cgacctggcggccgtgctgtc 278867



to top

>gb|AY701054.2| Streptomyces rimosus rimocidin synthase (rms) gene, partial cds
          Length = 8939

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 81   cccaggtaccggcgatcgagg 101
            |||||||||||||||||||||
Sbjct: 5038 cccaggtaccggcgatcgagg 5018



to top

>ref|XM_478005.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1026

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 305 atgcgcgcgctggtcacctcaggcgtcttcgc 336
           ||||||| ||||||| |||| |||||||||||
Sbjct: 202 atgcgcgtgctggtcgcctcgggcgtcttcgc 233



to top

>ref|XM_477999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 305 atgcgcgcgctggtcacctcaggcgtcttcgc 336
           ||||||| ||||||| |||| |||||||||||
Sbjct: 205 atgcgcgtgctggtcgcctcgggcgtcttcgc 236



to top

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 119    ctgctgcaggctcaggccgacctg 142
              ||||| ||||||||||||||||||
Sbjct: 843498 ctgctccaggctcaggccgacctg 843475



to top

>ref|XM_755216.1| Ustilago maydis 521 hypothetical protein (UM04162.1) partial mRNA
          Length = 5145

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   aatatcagccagtgatcgag 61
            ||||||||||||||||||||
Sbjct: 2072 aatatcagccagtgatcgag 2091



to top

>ref|XM_744633.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g05970)
           partial mRNA
          Length = 4257

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 497 gagtggttcaagaaggacgt 516
           ||||||||||||||||||||
Sbjct: 32  gagtggttcaagaaggacgt 13



to top

>ref|XM_816099.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053510329.150) partial mRNA
          Length = 1326

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 141  tgtggcgccacaccctctactacctcacgtcc 172
            ||||||||  |||||||| |||||||||||||
Sbjct: 1262 tgtggcgcttcaccctctcctacctcacgtcc 1293



to top

>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 288    cgttcctcggccgcctgatgcgcg 311
              ||||||| ||||||||||||||||
Sbjct: 108241 cgttcctgggccgcctgatgcgcg 108264



to top

>gb|AE005746.1| Caulobacter crescentus CB15 section 72 of 359 of the complete genome
          Length = 10948

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  tcacctcgctgcccgacctg 253
            ||||||||||||||||||||
Sbjct: 2245 tcacctcgctgcccgacctg 2226



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 305      atgcgcgcgctggtcacctcaggcgtcttcgc 336
                ||||||| ||||||| |||| |||||||||||
Sbjct: 16295699 atgcgcgtgctggtcgcctcgggcgtcttcgc 16295668



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 305      atgcgcgcgctggtcacctcaggcgtcttcgc 336
                ||||||| ||||||| |||| |||||||||||
Sbjct: 16265053 atgcgcgtgctggtcgcctcgggcgtcttcgc 16265022



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 305      atgcgcgcgctggtcacctcaggcgtcttcgc 336
                ||||||| ||||||| |||| |||||||||||
Sbjct: 16219664 atgcgcgtgctggtcgcctcgggcgtcttcgc 16219695



to top

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 326     ggcgtcttcgccgccggcgg 345
               ||||||||||||||||||||
Sbjct: 3091215 ggcgtcttcgccgccggcgg 3091196



to top

>dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0473C09
          Length = 141066

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 305  atgcgcgcgctggtcacctcaggcgtcttcgc 336
            ||||||| ||||||| |||| |||||||||||
Sbjct: 1755 atgcgcgtgctggtcgcctcgggcgtcttcgc 1724



to top

>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1634_H04
          Length = 151699

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 305    atgcgcgcgctggtcacctcaggcgtcttcgc 336
              ||||||| ||||||| |||| |||||||||||
Sbjct: 116137 atgcgcgtgctggtcgcctcgggcgtcttcgc 116106



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 305   atgcgcgcgctggtcacctcaggcgtcttcgc 336
             ||||||| ||||||| |||| |||||||||||
Sbjct: 85491 atgcgcgtgctggtcgcctcgggcgtcttcgc 85460



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 305   atgcgcgcgctggtcacctcaggcgtcttcgc 336
             ||||||| ||||||| |||| |||||||||||
Sbjct: 40102 atgcgcgtgctggtcgcctcgggcgtcttcgc 40133



to top

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 283     gcagccgttcctcggccgcc 302
               ||||||||||||||||||||
Sbjct: 3087139 gcagccgttcctcggccgcc 3087158


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,433,182
Number of Sequences: 3902068
Number of extensions: 3433182
Number of successful extensions: 69797
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68826
Number of HSP's gapped (non-prelim): 962
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top