>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3|
          Length = 623

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = +1

Query: 133 PHRPAGGSPDQPTASGRSPPH-LHPPPAQLI*GIHQWRHPRRSLSTPAGTGPP 288
           P RP   +P     S   PPH  HPPP Q     H   HP     T A   PP
Sbjct: 395 PQRPQHPAPHPQQHSQLQPPHSQHPPPHQ-----HIQHHPNHQHQTLAHQPPP 442

>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
           activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 28/107 (26%), Positives = 33/107 (30%), Gaps = 18/107 (16%)
 Frame = +1

Query: 13  PPAQLPSKSRHKMWAGHGVNXXXXXXXXXXXXXXX------------GPD*LPH----RP 144
           PPAQ P + RH  W     +                           G D   H    R 
Sbjct: 160 PPAQPPRRRRHGRWRPSASSTSSDSGSSSSSSASSSSSSSDEDEDDDGNDAADHAREARA 219

Query: 145 AGGSPDQ--PTASGRSPPHLHPPPAQLI*GIHQWRHPRRSLSTPAGT 279
            G  P    P A GR+PP   PPP            PR +  TPA +
Sbjct: 220 VGRGPSSAAPAAPGRTPPPPGPPPLS-----EAAPKPRAAARTPAAS 261

>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:|
           Proline-rich peptide SP-A (PRP-SP-A); Proline-rich
           peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)]
          Length = 676

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 18/53 (33%), Positives = 20/53 (37%)
 Frame = +1

Query: 133 PHRPAGGSPDQPTASGRSPPHLHPPPAQLI*GIHQWRHPRRSLSTPAGTGPPG 291
           P  PAG  P  P + G +PP   PPP            P      P G  PPG
Sbjct: 441 PPPPAGPPPPGPPSPGPAPPGARPPPG-----------PPPPGPPPPGPAPPG 482

>SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 1 (SWI/SNF complex 155
            kDa subunit) (BRG1-associated factor 155) (SWI3-related
            protein)
          Length = 1104

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 142  PAGGSPDQPTASGRSPPHLHPPPAQLI*GIHQWRHPRRSLSTPAGTGPP 288
            PA  +   PT SG +PP + P P  ++        PR  L+ P G  PP
Sbjct: 1035 PAVAANIHPTGSGPTPPGMPPMPGNIL-------GPRVPLTAPNGMYPP 1076

>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian
           branch point-binding protein mBBP) (BBP)
          Length = 639

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
 Frame = +1

Query: 118 GPD*LPHR-PA-----GGSPDQPTASGRSPPHLHPPPAQLI*GIHQWRH------PRRSL 261
           GP   PH  P+     GG P Q   +G  PP + PPP  +  G H   H       +   
Sbjct: 393 GPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLG 452

Query: 262 STPAGTG 282
           STP G+G
Sbjct: 453 STPVGSG 459

>SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 121 PD*LPHRPAGGSPDQPTASGRSPPHLHPPP 210
           P  LPHRP GG    P    R+ P   PPP
Sbjct: 37  PSPLPHRPRGGG-GGPRGGARASPATQPPP 65

>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus)
           (Mammalian branch point-binding protein mBBP) (BBP)
           (CW17)
          Length = 653

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
 Frame = +1

Query: 118 GPD*LPHR-PA-----GGSPDQPTASGRSPPHLHPPPAQLI*GIHQWRH------PRRSL 261
           GP   PH  P+     GG P Q   +G  PP + PPP  +  G H   H       +   
Sbjct: 393 GPHSFPHPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLG 452

Query: 262 STPAGTG 282
           STP G+G
Sbjct: 453 STPVGSG 459

>WASF1_HUMAN (Q92558) Wiskott-Aldrich syndrome protein family member 1|
           (WASP-family protein member 1) (WAVE-1 protein)
           (Verprolin homology domain-containing protein 1)
          Length = 559

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 130 LPHRPAGGSPDQPTASGRSPPHLHP-PPAQLI*GIHQWRHP 249
           L H P+G  P   TA G   P + P PP+Q+I      RHP
Sbjct: 448 LAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEPKRHP 488

>BAI1_HUMAN (O14514) Brain-specific angiogenesis inhibitor 1 precursor|
          Length = 1584

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 142  PAGGSPDQPTASGRSPPHLHPPPAQ 216
            P+GG P+ P A    PP   PPP Q
Sbjct: 1399 PSGGPPEAPPAQPPPPPPPPPPPPQ 1423

>WASP_MOUSE (P70315) Wiskott-Aldrich syndrome protein homolog (WASp)|
          Length = 520

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 130 LPHRPAGGSPDQPTASGRSPPHLHPPP 210
           LP  P GG+P  PT  G  PP    PP
Sbjct: 359 LPPVPMGGAPPPPTPRGPPPPGRGGPP 385

>DLX2A_BRARE (P50574) Homeobox protein Dlx2a (DLX-2) (Distal-less homeobox gene|
           2a)
          Length = 270

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 157 PDQPTASGRSPPHLHPPPA 213
           P+Q  ASG SPPH  PP A
Sbjct: 189 PEQHVASGESPPHPSPPLA 207

>BRO1_NEUCR (Q7SAN9) Vacuolar protein-sorting protein bro-1 (BRO|
           domain-containing protein 1)
          Length = 1012

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +1

Query: 130 LPHRPAGG--SPDQ---PTASGRSPPHLHPPPAQLI*GIHQWRHP 249
           +PH P G   +P Q   P++ GR P    PPP Q    I   RHP
Sbjct: 841 VPHNPGGQQQTPYQQYNPSSLGRIPGPASPPPNQTSFNIGPGRHP 885

>WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family member 1|
           (WASP-family protein member 1) (WAVE-1 protein)
          Length = 559

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 130 LPHRPAGGSPDQPTASGRSPPHLHP-PPAQLI*GIHQWRHP 249
           L H P+G  P   TA G   P + P PP+Q++      RHP
Sbjct: 448 LAHPPSGLHPAPSTAPGPHAPLMPPSPPSQVLPASEPKRHP 488


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,621,217
Number of Sequences: 219361
Number of extensions: 1152203
Number of successful extensions: 3871
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3806
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)