ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart38g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor 45 1e-04
2UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor 45 1e-04
3UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein... 42 0.001
4FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chlor... 30 3.7
5NDVA_RHIME (P18767) Beta-(1-->2)glucan export ATP-binding protei... 30 6.4

>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor|
          Length = 286

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
 Frame = +3

Query: 150 SYCDGST--YAPNSPFQASLSLVAAALPGNASSMPSGFATADAGTSPSRAYAMALCRGDV 323
           ++C+ S+  +  N+ +  +L+ + + L   +S   + +     G      + M LC GDV
Sbjct: 32  TFCNDSSGNFTRNTTYNTNLNTLLSTLSNQSSF--ANYYNLTTGLGSDTVHGMFLCIGDV 89

Query: 324 NASTCDXXXXXXXXXXXXQENCPNNTGATIYEDACVLRFSTLQFLDFL 467
           N +TC+             +NC N+  A IY  +C++R+S   FL  L
Sbjct: 90  NRTTCNACVKNATIEIA--KNCTNHREAIIYYFSCMVRYSDKFFLSTL 135



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>UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor|
          Length = 287

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
 Frame = +3

Query: 180 NSPFQASLSLVAAALPGNASSMPSGFATADAGTSPSRAYAMALCRGDVNASTCDXXXXXX 359
           N+ +  +L+ + + L   +S   + +     G +    + M LC GDVN +TC+      
Sbjct: 43  NTTYNKNLNTLLSTLSNQSSF--ANYYNLTTGLASDTVHGMFLCTGDVNRTTCNACVKNA 100

Query: 360 XXXXXXQENCPNNTGATIYEDACVLRFSTLQFLDFLRADQ---WQPRELAFQISQAFG 524
                  +NC N+  A IY   C++R+S   FL  L  +    W   +L   I ++FG
Sbjct: 101 TIEIA--KNCTNHREAIIYNVDCMVRYSDKFFLTTLETNPSYWWSSNDL---IPKSFG 153



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>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor|
          Length = 287

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
 Frame = +3

Query: 147 DSYCDGSTY--APNSPFQASLSLVAAALPGNASSMPSGFATADAGTSPSRAYAMALCRGD 320
           D++C  S+     N+ +  +L+ + +    N SS+ + +     G +    Y M LC GD
Sbjct: 34  DTFCIDSSRNTTGNTTYNKNLNTMLSTFR-NQSSIVNNY-NLTTGLASDTVYGMFLCTGD 91

Query: 321 VNASTCDXXXXXXXXXXXXQENCPNNTGATIYEDACVLRFSTLQFL 458
           VN +TC+             +NC N+  A IY   C++R+S   FL
Sbjct: 92  VNITTCNNCVKNATIEIV--KNCTNHREAIIYYIDCMVRYSDKFFL 135



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>FTSH1_ARATH (Q39102) Cell division protein ftsH homolog 1, chloroplast|
           precursor (EC 3.4.24.-)
          Length = 716

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +3

Query: 177 PNSPFQASLSLVAAALPGNASSMPSGFATADAGTSPS 287
           PNSPF + ++L AA L  + SS P   A  D   SPS
Sbjct: 60  PNSPFSSQVAL-AAILLSSISSSPLALAVVDEPASPS 95



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>NDVA_RHIME (P18767) Beta-(1-->2)glucan export ATP-binding protein ndvA|
          Length = 616

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 438 FSTLQFLDFLR-ADQWQPRELAFQISQAFGNVTSVPAAWFSAAATS 572
           F+T+ F+   R AD+      A  +++AFG + S+P +W S   TS
Sbjct: 99  FNTIAFVLVSREADRLAHGRRASLLTEAFGRIVSMPLSWHSQRGTS 144


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,380,969
Number of Sequences: 219361
Number of extensions: 707981
Number of successful extensions: 2091
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2087
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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