ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart38c10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_482395.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1694 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 513 tccgacgactccgactggtccatcggctggctggagccgcagg 555 |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1060 tccgacgactccgactggtccatcggctggctcgagccgcagg 1102 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 448 tcgacagggagtacgacatggtcatcgtgccgtccgacggcggcgg 493 ||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 989 tcgacagggagcacgacatggtcgtcgtgccgctcggcggcggcgg 1034
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 513 tccgacgactccgactggtccatcggctggctggagccgcagg 555 |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 19797949 tccgacgactccgactggtccatcggctggctcgagccgcagg 19797991 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 448 tcgacagggagtacgacatggtcatcgtgccgtccgacggcggcgg 493 ||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 19797878 tcgacagggagcacgacatggtcgtcgtgccgctcggcggcggcgg 19797923 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 379 ccgccggcggccgccgcgcgcggca 403 |||||||| |||||||||||||||| Sbjct: 28122096 ccgccggccgccgccgcgcgcggca 28122072 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 gccgccgccggcggccgccgcgcg 398 |||||||||||| ||||||||||| Sbjct: 24142755 gccgccgccggccgccgccgcgcg 24142732
>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0007M04 Length = 176293 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 513 tccgacgactccgactggtccatcggctggctggagccgcagg 555 |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 126900 tccgacgactccgactggtccatcggctggctcgagccgcagg 126942 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 448 tcgacagggagtacgacatggtcatcgtgccgtccgacggcggcgg 493 ||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 126829 tcgacagggagcacgacatggtcgtcgtgccgctcggcggcggcgg 126874
>dbj|AK072217.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159I12, full insert sequence Length = 1694 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Plus Query: 513 tccgacgactccgactggtccatcggctggctggagccgcagg 555 |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1060 tccgacgactccgactggtccatcggctggctcgagccgcagg 1102 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 448 tcgacagggagtacgacatggtcatcgtgccgtccgacggcggcgg 493 ||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 989 tcgacagggagcacgacatggtcgtcgtgccgctcggcggcggcgg 1034
>ref|XM_450744.1| Oryza sativa (japonica cultivar-group), mRNA Length = 659 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 485 cggcggcgggtgcctttccgggtccgagtccgacgactccgactggtccatcggctggct 544 |||||||||||| || |||||||| ||||| ||||||||||||||| ||||||| |||| Sbjct: 320 cggcggcgggtggctgtccgggtcggagtcggacgactccgactgggccatcgggtggca 379 Query: 545 ggag 548 |||| Sbjct: 380 ggag 383 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 307 tgacgggcgcctccttcccggagttcccctccgggttccgtgaggcggac 356 ||||| |||||||||||||||| ||||| ||||||||||| ||| ||||| Sbjct: 157 tgacgagcgcctccttcccggacttcccttccgggttccgggagccggac 206 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 218 catggccatggggctgggccgattcacccactggctctggccgg 261 |||||||||||||||| |||||||||||| ||||| ||||||| Sbjct: 47 catggccatggggctgaaccgattcacccaatggctgtggccgg 90
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 485 cggcggcgggtgcctttccgggtccgagtccgacgactccgactggtccatcggctggct 544 |||||||||||| || |||||||| ||||| ||||||||||||||| ||||||| |||| Sbjct: 12547967 cggcggcgggtggctgtccgggtcggagtcggacgactccgactgggccatcgggtggca 12548026 Query: 545 ggag 548 |||| Sbjct: 12548027 ggag 12548030 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 307 tgacgggcgcctccttcccggagttcccctccgggttccgtgaggcggac 356 ||||| |||||||||||||||| ||||| ||||||||||| ||| ||||| Sbjct: 12547804 tgacgagcgcctccttcccggacttcccttccgggttccgggagccggac 12547853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 218 catggccatggggctgggccgattcacccactggctctggccgg 261 |||||||||||||||| |||||||||||| ||||| ||||||| Sbjct: 12547694 catggccatggggctgaaccgattcacccaatggctgtggccgg 12547737 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 gccgccgccggcggccgccgc 395 ||||||||||||||||||||| Sbjct: 21276880 gccgccgccggcggccgccgc 21276900 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 gccgccgccggcggccgccgc 395 ||||||||||||||||||||| Sbjct: 19684158 gccgccgccggcggccgccgc 19684178
>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0041C07 Length = 179047 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 485 cggcggcgggtgcctttccgggtccgagtccgacgactccgactggtccatcggctggct 544 |||||||||||| || |||||||| ||||| ||||||||||||||| ||||||| |||| Sbjct: 13905 cggcggcgggtggctgtccgggtcggagtcggacgactccgactgggccatcgggtggca 13964 Query: 545 ggag 548 |||| Sbjct: 13965 ggag 13968 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 307 tgacgggcgcctccttcccggagttcccctccgggttccgtgaggcggac 356 ||||| |||||||||||||||| ||||| ||||||||||| ||| ||||| Sbjct: 13742 tgacgagcgcctccttcccggacttcccttccgggttccgggagccggac 13791 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 218 catggccatggggctgggccgattcacccactggctctggccgg 261 |||||||||||||||| |||||||||||| ||||| ||||||| Sbjct: 13632 catggccatggggctgaaccgattcacccaatggctgtggccgg 13675
>dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711A01 Length = 162400 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 485 cggcggcgggtgcctttccgggtccgagtccgacgactccgactggtccatcggctggct 544 |||||||||||| || |||||||| ||||| ||||||||||||||| ||||||| |||| Sbjct: 63294 cggcggcgggtggctgtccgggtcggagtcggacgactccgactgggccatcgggtggca 63353 Query: 545 ggag 548 |||| Sbjct: 63354 ggag 63357 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 307 tgacgggcgcctccttcccggagttcccctccgggttccgtgaggcggac 356 ||||| |||||||||||||||| ||||| ||||||||||| ||| ||||| Sbjct: 63131 tgacgagcgcctccttcccggacttcccttccgggttccgggagccggac 63180 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 218 catggccatggggctgggccgattcacccactggctctggccgg 261 |||||||||||||||| |||||||||||| ||||| ||||||| Sbjct: 63021 catggccatggggctgaaccgattcacccaatggctgtggccgg 63064
>dbj|AK109279.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-B03, full insert sequence Length = 659 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 485 cggcggcgggtgcctttccgggtccgagtccgacgactccgactggtccatcggctggct 544 |||||||||||| || |||||||| ||||| ||||||||||||||| ||||||| |||| Sbjct: 320 cggcggcgggtggctgtccgggtcggagtcggacgactccgactgggccatcgggtggca 379 Query: 545 ggag 548 |||| Sbjct: 380 ggag 383 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 307 tgacgggcgcctccttcccggagttcccctccgggttccgtgaggcggac 356 ||||| |||||||||||||||| ||||| ||||||||||| ||| ||||| Sbjct: 157 tgacgagcgcctccttcccggacttcccttccgggttccgggagccggac 206 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 218 catggccatggggctgggccgattcacccactggctctggccgg 261 |||||||||||||||| |||||||||||| ||||| ||||||| Sbjct: 47 catggccatggggctgaaccgattcacccaatggctgtggccgg 90
>gb|AF275345.3| Lycopersicon esculentum putative permease gene, partial cds; suppressor-like protein, putative centromere protein, putative auxin growth promotor protein, and putative protein phosphatase genes, complete cds; LTR-A long terminal repeat, complete sequence; putative copia-like polyprotein gene, complete cds; LTR-B long terminal repeat, complete sequence; MADS-box transcription factor JOINTLESS gene, complete cds; TH65-like protein gene, partial cds; and unknown genes Length = 118761 Score = 48.1 bits (24), Expect = 0.031 Identities = 39/44 (88%) Strand = Plus / Minus Query: 507 tccgagtccgacgactccgactggtccatcggctggctggagcc 550 ||||| ||||| ||||| |||||||| ||||| ||||||||||| Sbjct: 42004 tccgaatccgatgactctgactggtcgatcgggtggctggagcc 41961
>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence Length = 136866 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 376 ccgccgccggcggccgccgcgcgcggc 402 ||||||||||| ||||||||||||||| Sbjct: 94690 ccgccgccggccgccgccgcgcgcggc 94664
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 376 ccgccgccggcggccgccgcgcgcggc 402 ||||||||||| ||||||||||||||| Sbjct: 1774474 ccgccgccggccgccgccgcgcgcggc 1774448 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 378 gccgccggcggccgccgcgcgcggc 402 ||||||||| ||||||||||||||| Sbjct: 25182054 gccgccggccgccgccgcgcgcggc 25182030 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gccgccgccggcggccgccg 394 |||||||||||||||||||| Sbjct: 21606418 gccgccgccggcggccgccg 21606437
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 378 gccgccggcggccgccgcgcgcg 400 ||||||||||||||||||||||| Sbjct: 3651884 gccgccggcggccgccgcgcgcg 3651862 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 ctggtccatcggctggctgg 546 |||||||||||||||||||| Sbjct: 3944164 ctggtccatcggctggctgg 3944145
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0679C08 Length = 156266 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 376 ccgccgccggcggccgccgcgcgcggc 402 ||||||||||| ||||||||||||||| Sbjct: 99623 ccgccgccggccgccgccgcgcgcggc 99597
>ref|XM_463664.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1329 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 375 gccgccgccggcggccgccgcg 396 |||||||||||||||||||||| Sbjct: 195 gccgccgccggcggccgccgcg 174
>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete sequence Length = 163712 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 375 gccgccgccggcggccgccgcg 396 |||||||||||||||||||||| Sbjct: 48619 gccgccgccggcggccgccgcg 48640
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 375 gccgccgccggcggccgccgcg 396 |||||||||||||||||||||| Sbjct: 29722758 gccgccgccggcggccgccgcg 29722737
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 375 gccgccgccggcggccgccgcg 396 |||||||||||||||||||||| Sbjct: 29814180 gccgccgccggcggccgccgcg 29814159
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 375 gccgccgccggcggccgccgcg 396 |||||||||||||||||||||| Sbjct: 40501612 gccgccgccggcggccgccgcg 40501591 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 ccgccgccggcggccgccgcg 396 ||||||||||||||||||||| Sbjct: 39791668 ccgccgccggcggccgccgcg 39791648 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 379 ccgccggcggccgccgcgcgcggca 403 |||||||| |||||||||||||||| Sbjct: 12131118 ccgccggccgccgccgcgcgcggca 12131142
>dbj|AP004223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1033B05 Length = 138882 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 375 gccgccgccggcggccgccgcg 396 |||||||||||||||||||||| Sbjct: 63236 gccgccgccggcggccgccgcg 63215
>ref|NM_189907.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1602 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 376 ccgccgccggcggccgccgcg 396 ||||||||||||||||||||| Sbjct: 67 ccgccgccggcggccgccgcg 87
>ref|XM_476602.1| Oryza sativa (japonica cultivar-group), mRNA Length = 618 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 gccgcgcgcggcagaggaggg 411 ||||||||||||||||||||| Sbjct: 556 gccgcgcgcggcagaggaggg 576
>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0065A15, complete sequence Length = 168806 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 gccgccgccggcggccgccgc 395 ||||||||||||||||||||| Sbjct: 167233 gccgccgccggcggccgccgc 167253
>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0028C22, complete sequence Length = 154228 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 gccgccgccggcggccgccgc 395 ||||||||||||||||||||| Sbjct: 11425 gccgccgccggcggccgccgc 11445
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 380 cgccggcggccgccgcgcgcggcag 404 ||||| ||||||||||||||||||| Sbjct: 1589736 cgccgccggccgccgcgcgcggcag 1589712
>emb|Z81032.1|CEC02F4 Caenorhabditis elegans Cosmid C02F4, complete sequence Length = 38942 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 ccttctccactgccgccgccg 384 ||||||||||||||||||||| Sbjct: 14391 ccttctccactgccgccgccg 14371
>tpg|BK000800.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M211, complete sequence Length = 1218 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 379 ccgccggcggccgccgcgcgcggca 403 |||||||| |||||||||||||||| Sbjct: 589 ccgccggccgccgccgcgcgcggca 613
>ref|NM_069539.1| Caenorhabditis elegans C02F4.3 (C02F4.3) mRNA, complete cds Length = 435 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 ccttctccactgccgccgccg 384 ||||||||||||||||||||| Sbjct: 383 ccttctccactgccgccgccg 363
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 370 ccactgccgccgccggcggccgccgcgcgcggc 402 |||| |||||||||| | ||||||||||||||| Sbjct: 17046615 ccacagccgccgccgcccgccgccgcgcgcggc 17046647 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 gccggcggccgccgcgcgcg 400 |||||||||||||||||||| Sbjct: 18701634 gccggcggccgccgcgcgcg 18701615 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 cggcggccgccgcgcgcggc 402 |||||||||||||||||||| Sbjct: 12226319 cggcggccgccgcgcgcggc 12226300 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 ccgccggcggccgccgcgcgcggc 402 |||||||| ||||||||||||||| Sbjct: 12226288 ccgccggccgccgccgcgcgcggc 12226311
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 379 ccgccggcggccgccgcgcgcggca 403 |||||||| |||||||||||||||| Sbjct: 3441638 ccgccggccgccgccgcgcgcggca 3441662 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 gcgcgcggcagaggagggtc 413 |||||||||||||||||||| Sbjct: 18939875 gcgcgcggcagaggagggtc 18939856
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 391 gccgcgcgcggcagaggaggg 411 ||||||||||||||||||||| Sbjct: 2138672 gccgcgcgcggcagaggaggg 2138652 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gccgccgccggcggccgccg 394 |||||||||||||||||||| Sbjct: 26171666 gccgccgccggcggccgccg 26171647
>dbj|AP005862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0038K02 Length = 118635 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 gccgccgccggcggccgccgc 395 ||||||||||||||||||||| Sbjct: 9259 gccgccgccggcggccgccgc 9279
>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0470A12 Length = 185095 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 ccgccgccggcggccgccgcg 396 ||||||||||||||||||||| Sbjct: 142567 ccgccgccggcggccgccgcg 142547
>dbj|AP003414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1153F04 Length = 158174 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 379 ccgccggcggccgccgcgcgcggca 403 |||||||| |||||||||||||||| Sbjct: 98058 ccgccggccgccgccgcgcgcggca 98082
>dbj|AP004792.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0505A04 Length = 159241 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 378 gccgccggcggccgccgcgcgcggc 402 ||||||||| ||||||||||||||| Sbjct: 662 gccgccggccgccgccgcgcgcggc 638
>dbj|AP007205.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0048L03 Length = 142377 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 378 gccgccggcggccgccgcgcgcggc 402 ||||||||| ||||||||||||||| Sbjct: 128240 gccgccggccgccgccgcgcgcggc 128216
>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450E05 Length = 176553 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 gccgccgccggcggccgccgc 395 ||||||||||||||||||||| Sbjct: 29844 gccgccgccggcggccgccgc 29864
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0604E01 Length = 159049 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 379 ccgccggcggccgccgcgcgcggca 403 |||||||| |||||||||||||||| Sbjct: 119591 ccgccggccgccgccgcgcgcggca 119567
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0543D10 Length = 134866 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 379 ccgccggcggccgccgcgcgcggca 403 |||||||| |||||||||||||||| Sbjct: 5569 ccgccggccgccgccgcgcgcggca 5545
>dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1351_C05 Length = 112465 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 391 gccgcgcgcggcagaggaggg 411 ||||||||||||||||||||| Sbjct: 6574 gccgcgcgcggcagaggaggg 6554
>dbj|AK119919.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-G04, full insert sequence Length = 1622 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 gccgccgccggcggccgccgc 395 ||||||||||||||||||||| Sbjct: 62 gccgccgccggcggccgccgc 82
>dbj|AK119446.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-D02, full insert sequence Length = 4040 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 376 ccgccgccggcggccgccgcg 396 ||||||||||||||||||||| Sbjct: 933 ccgccgccggcggccgccgcg 953
>emb|BX255911.8| Zebrafish DNA sequence from clone DKEY-274C14 in linkage group 20, complete sequence Length = 206480 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 accggttttcgtttgattttg 176 ||||||||||||||||||||| Sbjct: 156077 accggttttcgtttgattttg 156057
>dbj|AP003829.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1417_E01 Length = 118058 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 391 gccgcgcgcggcagaggaggg 411 ||||||||||||||||||||| Sbjct: 94465 gccgcgcgcggcagaggaggg 94445
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 379 ccgccggcggccgccgcgcgcggca 403 |||||||| |||||||||||||||| Sbjct: 3441583 ccgccggccgccgccgcgcgcggca 3441607 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 gcgcgcggcagaggagggtc 413 |||||||||||||||||||| Sbjct: 18866102 gcgcgcggcagaggagggtc 18866083
>emb|AL606990.3|OSJN00122 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0066J23, complete sequence Length = 156934 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 370 ccactgccgccgccggcggccgccgcgcgcggc 402 |||| |||||||||| | ||||||||||||||| Sbjct: 101871 ccacagccgccgccgcccgccgccgcgcgcggc 101903
>emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 116371 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 379 ccgccggcggccgccgcgcgcggca 403 |||||||| |||||||||||||||| Sbjct: 90277 ccgccggccgccgccgcgcgcggca 90253
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137936 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 379 ccgccggcggccgccgcgcgcggca 403 |||||||| |||||||||||||||| Sbjct: 120691 ccgccggccgccgccgcgcgcggca 120715
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 gccgccggcggccgccgcgc 397 |||||||||||||||||||| Sbjct: 740292 gccgccggcggccgccgcgc 740311
>ref|XM_464518.1| Oryza sativa (japonica cultivar-group), mRNA Length = 814 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 cgccgccggcggccgccgcg 396 |||||||||||||||||||| Sbjct: 441 cgccgccggcggccgccgcg 460
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 ctcgccttctccactgccgccgcc 383 |||||||||||||| ||||||||| Sbjct: 3483624 ctcgccttctccacggccgccgcc 3483647 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 cggcggccgccgcgcgcggc 402 |||||||||||||||||||| Sbjct: 657424 cggcggccgccgcgcgcggc 657405
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 gccggcggccgccgcgcgcg 400 |||||||||||||||||||| Sbjct: 2809716 gccggcggccgccgcgcgcg 2809697
>ref|XM_479235.1| Oryza sativa (japonica cultivar-group), mRNA Length = 762 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gccgccgccggcggccgccg 394 |||||||||||||||||||| Sbjct: 178 gccgccgccggcggccgccg 197
>ref|XM_472242.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 gccggcggccgccgcgcgcg 400 |||||||||||||||||||| Sbjct: 92 gccggcggccgccgcgcgcg 73
>gb|AC154314.2| Mus musculus BAC clone RP23-347J22 from chromosome 13, complete sequence Length = 189556 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 gagcttctcatggccatggg 229 |||||||||||||||||||| Sbjct: 109769 gagcttctcatggccatggg 109750
>ref|XM_421184.1| PREDICTED: Gallus gallus similar to GALNTL1 protein (LOC423263), mRNA Length = 3633 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 379 ccgccggcggccgccgcgcgcggc 402 |||||||||||||||| ||||||| Sbjct: 110 ccgccggcggccgccgagcgcggc 87
>ref|XM_601000.2| PREDICTED: Bos taurus similar to Indian hedgehog protein precursor (IHH) (HHG-2) (LOC522714), mRNA Length = 2446 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 gccgccggcggccgccgcgc 397 |||||||||||||||||||| Sbjct: 551 gccgccggcggccgccgcgc 570
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 ctgccgccgccggcggccgc 392 |||||||||||||||||||| Sbjct: 1500407 ctgccgccgccggcggccgc 1500388
>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05, complete sequence Length = 185211 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 cggcggccgccgcgcgcggc 402 |||||||||||||||||||| Sbjct: 51200 cggcggccgccgcgcgcggc 51181 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 ccgccggcggccgccgcgcgcggc 402 |||||||| ||||||||||||||| Sbjct: 51169 ccgccggccgccgccgcgcgcggc 51192
>emb|CR859747.1| Pongo pygmaeus mRNA; cDNA DKFZp469I0226 (from clone DKFZp469I0226) Length = 2662 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 313 gcgcctccttcccggagttcccctccgg 340 ||||| ||||||||||| |||||||||| Sbjct: 49 gcgcccccttcccggagctcccctccgg 76
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gccgccgccggcggccgccg 394 |||||||||||||||||||| Sbjct: 115345 gccgccgccggcggccgccg 115326
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 gcgcgcggcagaggagggtc 413 |||||||||||||||||||| Sbjct: 21765866 gcgcgcggcagaggagggtc 21765885 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cgccgccggcggccgccgcg 396 |||||||||||||||||||| Sbjct: 5654808 cgccgccggcggccgccgcg 5654789
>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21, complete sequence Length = 160456 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 gccggcggccgccgcgcgcg 400 |||||||||||||||||||| Sbjct: 50772 gccggcggccgccgcgcgcg 50753
>gb|AC079414.6| Homo sapiens chromosome 16 clone RP11-358L22, complete sequence Length = 167015 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccatggggctgggccgattc 242 |||||||||||||||||||| Sbjct: 128253 ccatggggctgggccgattc 128234
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ccggcggccgccgcgcgcgg 401 |||||||||||||||||||| Sbjct: 3007543 ccggcggccgccgcgcgcgg 3007562 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 ccgccggcggccgccgcgcg 398 |||||||||||||||||||| Sbjct: 439411 ccgccggcggccgccgcgcg 439430
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0567G03 Length = 196834 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gccgccgccggcggccgccg 394 |||||||||||||||||||| Sbjct: 163602 gccgccgccggcggccgccg 163621
>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062E01 Length = 161804 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gccgccgccggcggccgccg 394 |||||||||||||||||||| Sbjct: 5349 gccgccgccggcggccgccg 5368
>dbj|AP004620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0605H02 Length = 175547 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 gccgccgccggcggccgccgcgcg 398 |||||||||||| ||||||||||| Sbjct: 9094 gccgccgccggccgccgccgcgcg 9071
>gb|AE005068.1| Halobacterium sp. NRC-1 section 99 of 170 of the complete genome Length = 13635 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 gcggccgccgcgcgcggcag 404 |||||||||||||||||||| Sbjct: 12015 gcggccgccgcgcgcggcag 11996
>dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0025F02 Length = 156545 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 gcgcgcggcagaggagggtc 413 |||||||||||||||||||| Sbjct: 147263 gcgcgcggcagaggagggtc 147282
>dbj|AP005835.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0008E01 Length = 156856 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 gcgcgcggcagaggagggtc 413 |||||||||||||||||||| Sbjct: 58265 gcgcgcggcagaggagggtc 58284
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419A09 Length = 168064 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cgccgccggcggccgccgcg 396 |||||||||||||||||||| Sbjct: 82544 cgccgccggcggccgccgcg 82525
>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0028A08 Length = 150818 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 gccgccgccggcggccgccgcgcg 398 |||||||||||| ||||||||||| Sbjct: 96241 gccgccgccggccgccgccgcgcg 96218
>dbj|AK105605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A11, full insert sequence Length = 2191 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gccgccgccggcggccgccg 394 |||||||||||||||||||| Sbjct: 1297 gccgccgccggcggccgccg 1316
>dbj|AK068381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147P03, full insert sequence Length = 813 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 cgccgccggcggccgccgcg 396 |||||||||||||||||||| Sbjct: 440 cgccgccggcggccgccgcg 459
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E12 Length = 152448 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gccgccgccggcggccgccg 394 |||||||||||||||||||| Sbjct: 63524 gccgccgccggcggccgccg 63505
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 tcatggccatggggctgggc 236 |||||||||||||||||||| Sbjct: 4445348 tcatggccatggggctgggc 4445329 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 tggccgggtaacgccgcgcg 274 |||||||||||||||||||| Sbjct: 1404594 tggccgggtaacgccgcgcg 1404613
>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153064 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 gcgcgcggcagaggagggtc 413 |||||||||||||||||||| Sbjct: 30504 gcgcgcggcagaggagggtc 30523
>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151203 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 gcgcgcggcagaggagggtc 413 |||||||||||||||||||| Sbjct: 35992 gcgcgcggcagaggagggtc 35973
>gb|AC006714.3| Caenorhabditis elegans cosmid Y119D3B, complete sequence Length = 87780 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 cttctccactgccgccgccg 384 |||||||||||||||||||| Sbjct: 40856 cttctccactgccgccgccg 40837 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,538,523 Number of Sequences: 3902068 Number of extensions: 3538523 Number of successful extensions: 96590 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93345 Number of HSP's gapped (non-prelim): 3245 length of query: 556 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 533 effective length of database: 17,143,297,704 effective search space: 9137377676232 effective search space used: 9137377676232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
