ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart38b08 |
|---|---|
| Clone Library Name | barley_pub |
>HD2B_MAIZE (Q9M4U5) Histone deacetylase 2b (HD2b) (Zm-HD2b)| Length = 303 Score = 146 bits (368), Expect = 5e-35 Identities = 79/139 (56%), Positives = 91/139 (65%) Frame = +2 Query: 110 MEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVDGGQKLAIGTLSMD 289 MEFWGLEVKP ++K P LH+SQAALGE KK D ++VKVD +KLAIGTLS+D Sbjct: 1 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALMYVKVDD-KKLAIGTLSID 59 Query: 290 KFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQPAQGXXXXXXXXXXXXXXXXXXPII 469 K+PQIQFDLVF KEFELSH SKTTSVFFSGY V QP +G P+I Sbjct: 60 KYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQPIEG--DEMDLDSEDEEEELNIPVI 117 Query: 470 PAVAKENGKPEAKEQKKQV 526 K +GK E K Q+K V Sbjct: 118 KENGKADGKEEQKNQEKAV 136
>HD2C_MAIZE (Q9M4U4) Histone deacetylase 2c (HD2c) (Zm-HD2c)| Length = 300 Score = 140 bits (354), Expect = 2e-33 Identities = 78/138 (56%), Positives = 91/138 (65%) Frame = +2 Query: 110 MEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVDGGQKLAIGTLSMD 289 MEFWGLEVKP ++K P LHLSQAALGE KK D ++VK+D QKLAIGTLS+D Sbjct: 1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKSDNALMYVKIDD-QKLAIGTLSVD 59 Query: 290 KFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQPAQGXXXXXXXXXXXXXXXXXXPII 469 K P IQFDL+F+KEFELSH SKTTSVFF+GY V QP + + Sbjct: 60 KNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFEEDEMDLDSEDEDEELN-----V 114 Query: 470 PAVAKENGKPEAKEQKKQ 523 PAV KENGK + K+QK Q Sbjct: 115 PAV-KENGKADEKKQKSQ 131
>HD2A_MAIZE (O24591) Histone deacetylase 2a (HD2a) (Zm-HD2a) (Nucleolar histone| deacetylase HD2-p39) Length = 307 Score = 139 bits (350), Expect = 7e-33 Identities = 76/138 (55%), Positives = 89/138 (64%) Frame = +2 Query: 110 MEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVDGGQKLAIGTLSMD 289 MEFWGLEVKP ++K P LHLSQAALGE KK D ++VK+D QKLAIGTLS+D Sbjct: 1 MEFWGLEVKPGSTVKCEPGYGFVLHLSQAALGESKKSDNALMYVKIDD-QKLAIGTLSVD 59 Query: 290 KFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQPAQGXXXXXXXXXXXXXXXXXXPII 469 K P IQFDL+F+KEFELSH SKTTSVFF+GY V QP + + Sbjct: 60 KNPHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFE------EDEMDLDSEDEDEELN 113 Query: 470 PAVAKENGKPEAKEQKKQ 523 V KENGK + K+QK Q Sbjct: 114 VPVVKENGKADEKKQKSQ 131
>HD2A_SOLCH (Q6V9I6) Histone deacetylase 2a (HD2a) (ScHD2a)| Length = 269 Score = 110 bits (275), Expect = 3e-24 Identities = 61/138 (44%), Positives = 80/138 (57%), Gaps = 1/138 (0%) Frame = +2 Query: 110 MEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVD-GGQKLAIGTLSM 286 MEFWG EVK + + V P D LHLSQA+LGE+KKD ++ + V+ G+KL +GTL+ Sbjct: 1 MEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKSESVCLSVNIDGKKLVLGTLNS 60 Query: 287 DKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQPAQGXXXXXXXXXXXXXXXXXXPI 466 +K PQ QFDLVF+++FELSHN K+ SV+F GY P + Sbjct: 61 EKVPQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNPFEEEEDDEDDYDESDED------ 114 Query: 467 IPAVAKENGKPEAKEQKK 520 IP +GKPE KE K Sbjct: 115 IPLTLANSGKPEPKEAGK 132
>HD2B_ARATH (Q56WH4) Histone deacetylase 2b (HD-tuins protein 2)| Length = 306 Score = 102 bits (255), Expect = 7e-22 Identities = 49/91 (53%), Positives = 62/91 (68%) Frame = +2 Query: 110 MEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVDGGQKLAIGTLSMD 289 MEFWG+ V P + KV+PE+D +H+SQA+L K ++ + GG KL IGTLS D Sbjct: 1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVVLSVTVGGAKLVIGTLSQD 60 Query: 290 KFPQIQFDLVFEKEFELSHNSKTTSVFFSGY 382 KFPQI FDLVF+KEFELSH+ +V F GY Sbjct: 61 KFPQISFDLVFDKEFELSHSGTKANVHFIGY 91
>HD2A_SOYBN (Q8LJS2) Histone deacetylase 2a (HD2a) (Nucleolar histone| deacetylase HD2-p39) Length = 295 Score = 100 bits (250), Expect = 3e-21 Identities = 58/144 (40%), Positives = 78/144 (54%), Gaps = 5/144 (3%) Frame = +2 Query: 110 MEFWGLEVKPNQSIKVSPED--DHFLHLSQAALGEVKKD---DKTTLFVKVDGGQKLAIG 274 MEFWG+EVK Q++ V P D D ++H+SQ ALGE KKD + L++KV G QK+ +G Sbjct: 1 MEFWGVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKV-GEQKIVLG 59 Query: 275 TLSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVFQPAQGXXXXXXXXXXXXXXXX 454 TLS D P + DLV + + ELSH SK+ SVFF GY V Sbjct: 60 TLSRDGIPHLSLDLVLDSDSELSHTSKSASVFFCGYKVLTGNDNASDFSDSSEEDEE--- 116 Query: 455 XXPIIPAVAKENGKPEAKEQKKQV 526 + ++NGKPE K + +V Sbjct: 117 ----LALEGQDNGKPELKAEGAKV 136
>HD2A_ARATH (Q9FVE6) Histone deacetylase 2a (HD-tuins protein 1)| Length = 245 Score = 92.0 bits (227), Expect = 1e-18 Identities = 49/93 (52%), Positives = 63/93 (67%), Gaps = 2/93 (2%) Frame = +2 Query: 110 MEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVK--KDDKTTLFVKVDGGQKLAIGTLS 283 MEFWG+EVK + + V+PE+ +H+SQA+LGE K K + L VKV G Q L +GTLS Sbjct: 1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECKNKKGEFVPLHVKV-GNQNLVLGTLS 59 Query: 284 MDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGY 382 + PQ+ DLVF+KEFELSH SV+F GY Sbjct: 60 TENIPQLFCDLVFDKEFELSHTWGKGSVYFVGY 92
>HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3)| Length = 294 Score = 90.5 bits (223), Expect = 3e-18 Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 2/95 (2%) Frame = +2 Query: 110 MEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKD--DKTTLFVKVDGGQKLAIGTLS 283 MEFWG+EVK + + + P D +H+SQ ALGE K + + L+V V G KL IGTLS Sbjct: 1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNNVTEPIQLYVTV-GSDKLLIGTLS 59 Query: 284 MDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNV 388 +KFPQ+ ++V E+ F LSH K SVFFSGY V Sbjct: 60 HEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKV 94
>HD2D_ARATH (Q9M4T3) Histone deacetylase 2d (HD-tuins protein 4)| Length = 203 Score = 82.0 bits (201), Expect = 1e-15 Identities = 46/98 (46%), Positives = 59/98 (60%), Gaps = 4/98 (4%) Frame = +2 Query: 110 MEFWGLEVKPNQSIKVSPEDDHFLHLSQAALGE---VKKDDKTTLFVKV-DGGQKLAIGT 277 MEFWG+E+KP + KV +D +H SQ LG+ VKKD+ ++VK+ D IG Sbjct: 1 MEFWGIEIKPGKPFKVIQKDGFMVHASQVTLGDVEKVKKDETFAVYVKIGDDENGFMIGN 60 Query: 278 LSMDKFPQIQFDLVFEKEFELSHNSKTTSVFFSGYNVF 391 LS KFPQ DL EFE+SHNS T+SV+ GY F Sbjct: 61 LS-QKFPQFSIDLYLGHEFEISHNS-TSSVYLIGYRTF 96
>FKBP4_SPOFR (Q26486) 46 kDa FK506-binding nuclear protein (EC 5.2.1.8)| (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) Length = 412 Score = 35.8 bits (81), Expect = 0.10 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Frame = +2 Query: 116 FWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVDGGQKLAIGTLSMDKF 295 FWGL ++PN+ E H+SQAA+ D+ + V G+ + TL K Sbjct: 2 FWGLIMEPNKRYTQVVEKP--FHISQAAMDISTGDNDPCQVMVVVDGKNFLVCTLQKGKI 59 Query: 296 PQIQFDLVFEKEFELSH-NSKTTSVFFSGY 382 Q+ DL F+ +S + +V +GY Sbjct: 60 IQVPLDLYFKSGDSVSFLTNGKCNVHLTGY 89
>VIT5_CAEEL (P06125) Vitellogenin 5 precursor| Length = 1603 Score = 32.7 bits (73), Expect = 0.87 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +2 Query: 260 KLAIGTLSMDKFPQIQFDLVFEKEFELSHN 349 ++ IG L +I+FD +FEKEF+L +N Sbjct: 1023 RVTIGNLEKTDLSEIKFDKIFEKEFDLENN 1052
>VIT4_CAEEL (P18947) Vitellogenin 4 precursor| Length = 1603 Score = 32.7 bits (73), Expect = 0.87 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +2 Query: 260 KLAIGTLSMDKFPQIQFDLVFEKEFELSHN 349 ++ IG L +I+FD +FEKEF+L +N Sbjct: 1023 RVTIGNLEKTDLSEIKFDKIFEKEFDLENN 1052
>VIT3_CAEEL (Q9N4J2) Vitellogenin 3 precursor| Length = 1603 Score = 32.7 bits (73), Expect = 0.87 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +2 Query: 260 KLAIGTLSMDKFPQIQFDLVFEKEFELSHN 349 ++ IG L +I+FD +FEKEF+L +N Sbjct: 1023 RVTIGNLEKTDLSEIKFDKIFEKEFDLENN 1052
>VIT2_CAEEL (P05690) Vitellogenin 2 precursor| Length = 1613 Score = 32.3 bits (72), Expect = 1.1 Identities = 22/79 (27%), Positives = 37/79 (46%) Frame = +2 Query: 116 FWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVDGGQKLAIGTLSMDKF 295 F GLEV +I +++L Q V+ ++ F +L +G L + Sbjct: 982 FLGLEVSTRGNILNQHTLENWLLAEQDFEVSVENKNRPAEFTA-----RLTVGQLEKTEL 1036 Query: 296 PQIQFDLVFEKEFELSHNS 352 QI+++ +FEKEFEL + Sbjct: 1037 SQIKYNKIFEKEFELEQEN 1055
>VIT1_CAEEL (P55155) Vitellogenin 1 precursor| Length = 1616 Score = 32.0 bits (71), Expect = 1.5 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Frame = +2 Query: 116 FWGLEVKPNQSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVDGGQKLAIGTLSMDKF 295 F GLEV +I +++L Q EV ++K + + +L +G L + Sbjct: 984 FLGLEVSTRGNILNQHTLENWLLAEQDF--EVSVENK---YRPAEFTARLTVGQLEKTEL 1038 Query: 296 PQIQFDLVFEKEFEL-SHNSKTTSVFFS 376 QI+++ +FEKEFEL N+++ +F+ Sbjct: 1039 SQIKYNKIFEKEFELEQENTESRREYFT 1066
>LIFR_HUMAN (P42702) Leukemia inhibitory factor receptor precursor (LIF| receptor) (LIF-R) (CD118 antigen) Length = 1097 Score = 30.8 bits (68), Expect = 3.3 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -2 Query: 279 RVPMASFWPPSTLTNKVVLSSFLTSPRAAWERWRKWSSSGETLM 148 R +FW S +NK + SP + WR+WSS G+ L+ Sbjct: 510 RCSTETFWKWSKWSNKKQHLTTEASPSKGPDTWREWSSDGKNLI 553
>LEU2_AZOVI (P96195) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 470 Score = 30.0 bits (66), Expect = 5.6 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%) Frame = -2 Query: 207 SPRAAWERW----RKWSSSGETLMDWLGLTSRPQNSMAT 103 SPRA+ RW WS S W G +SRP +S AT Sbjct: 369 SPRASSRRWWCRAPGWSRSRRRRRGWTGSSSRPVSSGAT 407
>C8AP2_MOUSE (Q9WUF3) CASP8-associated protein 2 (FLICE-associated huge protein)| Length = 1962 Score = 30.0 bits (66), Expect = 5.6 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 18/107 (16%) Frame = -3 Query: 440 QTHLQNQNPSHLPGQVGKHCSQRRRRLLSWNCVTAQIPFR----------RRGRTGSEGT 291 ++H + QNP HL V KHC+ N V ++ P++ RRGR+G+ Sbjct: 197 KSHSEAQNPLHLSTGVEKHCA---------NNVWSRSPYQVGEGNSNEDNRRGRSGT--- 244 Query: 290 CP*RGSRWLASGRRRP*QTRLSCHPS*PH--------QGQPGRDGGS 174 R S+ R SC+ S P QG P + G S Sbjct: 245 ---RHSQCSRGTDRTQKDLHSSCNDSEPRDKEANSRLQGHPEKHGNS 288
>SIP1_MOUSE (Q9R0G7) Zinc finger homeobox protein 1b (Smad-interacting protein| 1) Length = 1215 Score = 29.6 bits (65), Expect = 7.3 Identities = 22/84 (26%), Positives = 34/84 (40%) Frame = +3 Query: 12 IHYYPPALNPTLGLPSPPAXXXXXXXXXXXXLPWSSGASRLSLTSPSRFLLKMTTSSISP 191 ++ Y + +P+L S P LP S S+TSPS L + +S P Sbjct: 697 VYQYSNSRSPSLERTSKPLAPNSNPTTKDSLLPRSPVKPMDSITSPSIAELHNSVTSCDP 756 Query: 192 RLPLVRSRRMTRQPCLSRSTAARS 263 L L +S T + + +RS Sbjct: 757 PLRLTKSSHFTNIKAVDKLDHSRS 780
>RPTN_MOUSE (P97347) Repetin| Length = 1130 Score = 29.6 bits (65), Expect = 7.3 Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Frame = -3 Query: 440 QTHLQNQNPSHLPGQVGK-----HCSQRRRRLLSWNCVTAQIPFRRRGRTGSEGTCP*RG 276 Q H Q + GQ G+ H Q+ R+ LS +G+ G + P G Sbjct: 643 QGHKDRQGQNTHQGQKGRQDLSSHQGQKGRQDLS----------PHQGQKGRQDQSPHLG 692 Query: 275 SRWLASGR--RRP*QTRLSCHPS*PHQGQPGRDGGSGHLQEK 156 + GR + P Q + H PHQGQ GR S H +K Sbjct: 693 QK----GRHDQSPHQGQKGRHDQSPHQGQKGRQDLSSHQGQK 730
>QUEA_PHOPR (Q6LU70) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 351 Score = 29.3 bits (64), Expect = 9.6 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Frame = +2 Query: 143 QSIKVSPEDDHFLHLSQAALGEVKKDDKTTLFVKVDGGQKLAIGTLSMDKFPQIQFDLVF 322 Q ++V DDH +H + + D K +GG+ +A+GT S+ D V Sbjct: 213 QPVRVDNIDDHHMHSEYVEVPQDVVDAVNA--TKANGGRIIAVGTTSVRSLESAAQDAV- 269 Query: 323 EKEFELSHNSKTTSVF-FSGY 382 +K EL T +F F GY Sbjct: 270 KKGTELVPFFGDTEIFIFPGY 290 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,873,006 Number of Sequences: 219361 Number of extensions: 1396523 Number of successful extensions: 4333 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4316 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
