| Clone Name | bart37a03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_183532.1| Oryza sativa (japonica cultivar-group), mRNA Length = 552 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 310 atggagaggcagagggtggtggtggtgg 337 |||||||| ||||||||||||||||||| Sbjct: 1 atggagagccagagggtggtggtggtgg 28
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 310 atggagaggcagagggtggtggtggtgg 337 |||||||| ||||||||||||||||||| Sbjct: 594858 atggagagccagagggtggtggtggtgg 594885
>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439B06 Length = 135991 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 310 atggagaggcagagggtggtggtggtgg 337 |||||||| ||||||||||||||||||| Sbjct: 69463 atggagagccagagggtggtggtggtgg 69490
>ref|NM_177251.2| Mus musculus RIKEN cDNA D830014E11 gene (D830014E11Rik), mRNA Length = 2979 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Minus Query: 71 ggctaagctaggccaggccaggg 93 ||||||||||||||||||||||| Sbjct: 964 ggctaagctaggccaggccaggg 942
>gb|AC137107.7| Mus musculus chromosome 5, clone RP23-274I21, complete sequence Length = 182588 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Minus Query: 71 ggctaagctaggccaggccaggg 93 ||||||||||||||||||||||| Sbjct: 149144 ggctaagctaggccaggccaggg 149122
>gb|AC124113.9| Mus musculus chromosome 5, clone RP24-354P12, complete sequence Length = 156826 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Plus Query: 71 ggctaagctaggccaggccaggg 93 ||||||||||||||||||||||| Sbjct: 138325 ggctaagctaggccaggccaggg 138347
>dbj|AK085824.1| Mus musculus 16 days neonate heart cDNA, RIKEN full-length enriched library, clone:D830014E11 product:hypothetical protein, full insert sequence Length = 2979 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Minus Query: 71 ggctaagctaggccaggccaggg 93 ||||||||||||||||||||||| Sbjct: 964 ggctaagctaggccaggccaggg 942
>ref|XM_415579.1| PREDICTED: Gallus gallus similar to skeletal myosin heavy chain (LOC417308), mRNA Length = 5938 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 312 ggagaggcagagggtggtggtggtgg 337 |||||||||||| ||||||||||||| Sbjct: 1885 ggagaggcagagagtggtggtggtgg 1910
>dbj|AB021180.1| Gallus gallus mRNA for skeletal myosin heavy chain, complete cds Length = 5951 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 312 ggagaggcagagggtggtggtggtgg 337 |||||||||||| ||||||||||||| Sbjct: 1885 ggagaggcagagagtggtggtggtgg 1910
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 313 gagaggcagagggtggtggtggtgg 337 |||||| |||||||||||||||||| Sbjct: 203557 gagagggagagggtggtggtggtgg 203533
>gb|AC170739.3| Sorex araneus clone SA_Ba-515F19, complete sequence Length = 101541 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 314 agaggcagagggtggtggtggtggg 338 |||||||| |||||||||||||||| Sbjct: 80207 agaggcagggggtggtggtggtggg 80231
>gb|AC090443.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-434H17, complete sequence Length = 161421 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 318 gcagagggtggtggtggtgggtgga 342 |||||||||||||||| |||||||| Sbjct: 8598 gcagagggtggtggtgatgggtgga 8574
>gb|AC165965.3| Mus musculus BAC clone RP23-307L24 from chromosome 6, complete sequence Length = 209230 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 tccctccccctgctcccaacc 114 ||||||||||||||||||||| Sbjct: 33252 tccctccccctgctcccaacc 33272
>gb|AY359497.1| Ameiva corax specimen-voucher SBH266428 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 1015 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 gagggtggtggtggtgggtgg 341 ||||||||||||||||||||| Sbjct: 59 gagggtggtggtggtgggtgg 39
>emb|AL591682.8| Human DNA sequence from clone RP11-356K24 on chromosome 6 Contains part of gene KIAA1733 and a CpG island, complete sequence Length = 164000 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 ggcagagggtggtggtggtgg 337 ||||||||||||||||||||| Sbjct: 72250 ggcagagggtggtggtggtgg 72230
>gb|AC165264.2| Mus musculus BAC clone RP23-36M22 from chromosome 17, complete sequence Length = 185631 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 ccctccccctgctcccaacca 115 ||||||||||||||||||||| Sbjct: 129274 ccctccccctgctcccaacca 129254
>gb|AC104334.2| Homo sapiens chromosome 1 clone RP11-411H5, complete sequence Length = 129880 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 ggcagagggtggtggtggtgg 337 ||||||||||||||||||||| Sbjct: 57454 ggcagagggtggtggtggtgg 57434
>gb|AC170743.3| Sorex araneus clone SA_Ba-619E1, complete sequence Length = 147797 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 314 agaggcagagggtggtggtggtggg 338 |||||||| |||||||||||||||| Sbjct: 11949 agaggcagggggtggtggtggtggg 11973
>gb|AF312225.1|AF312225 Homo sapiens chromosome 2 map 2q37.1, complete sequence Length = 345102 Score = 42.1 bits (21), Expect = 1.1 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 309 gatggagaggcagagggtggtggtggtgg 337 ||||||||||||| ||||||||||||||| Sbjct: 61512 gatggagaggcag-gggtggtggtggtgg 61539
>gb|AC019130.6| Homo sapiens BAC clone RP11-563E16 from 2, complete sequence Length = 139049 Score = 42.1 bits (21), Expect = 1.1 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 309 gatggagaggcagagggtggtggtggtgg 337 ||||||||||||| ||||||||||||||| Sbjct: 64625 gatggagaggcag-gggtggtggtggtgg 64652
>gb|AC159284.2| Mus musculus BAC clone RP23-318K10 from chromosome 6, complete sequence Length = 188553 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 tccctccccctgctcccaacc 114 ||||||||||||||||||||| Sbjct: 98266 tccctccccctgctcccaacc 98286
>gb|AC025594.5|AC025594 Homo sapiens chromosome 7 clone RP11-309L24, complete sequence Length = 200197 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 gagggtggtggtggtgggtgg 341 ||||||||||||||||||||| Sbjct: 116515 gagggtggtggtggtgggtgg 116535
>gb|AC022236.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-425I8, complete sequence Length = 198392 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 318 gcagagggtggtggtggtgggtgga 342 |||||||||||||||| |||||||| Sbjct: 196301 gcagagggtggtggtgatgggtgga 196277
>gb|AC114425.14| Mus musculus chromosome 5, clone RP24-85B11, complete sequence Length = 208233 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 98 tccccctgctcccaaccacaccttc 122 ||||||||||||||||| ||||||| Sbjct: 51912 tccccctgctcccaaccccaccttc 51888
>gb|AC165078.2| Mus musculus BAC clone RP24-287O1 from chromosome 12, complete sequence Length = 172492 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 agggtggtggtggtgggtgg 341 |||||||||||||||||||| Sbjct: 83814 agggtggtggtggtgggtgg 83795
>gb|AC163703.4| Mus musculus BAC clone RP23-359B23 from chromosome 8, complete sequence Length = 219082 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 ccctccccctgctcccaacc 114 |||||||||||||||||||| Sbjct: 54300 ccctccccctgctcccaacc 54319
>ref|NM_194112.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2259 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gagaggcagagggtggtggt 332 |||||||||||||||||||| Sbjct: 726 gagaggcagagggtggtggt 707
>gb|AC120135.7| Mus musculus chromosome 7, clone RP23-64O4, complete sequence Length = 220872 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 gcatcttaataatggtagcagtag 50 ||||||||||| |||||||||||| Sbjct: 167398 gcatcttaatagtggtagcagtag 167375
>gb|AC154623.2| Mus musculus BAC clone RP23-327K7 from chromosome 13, complete sequence Length = 190884 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ccctccccctgctcccaacc 114 |||||||||||||||||||| Sbjct: 90803 ccctccccctgctcccaacc 90784
>gb|AC150540.2| Bos taurus BAC CH240-385H19 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 172471 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ggcagagggtggtggtggtg 336 |||||||||||||||||||| Sbjct: 5505 ggcagagggtggtggtggtg 5524
>gb|AC115036.10| Mus musculus chromosome 7, clone RP24-274F20, complete sequence Length = 173506 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 gcatcttaataatggtagcagtag 50 ||||||||||| |||||||||||| Sbjct: 35156 gcatcttaatagtggtagcagtag 35133
>ref|NM_001037098.1| Mus musculus BTB (POZ) domain containing 14A (Btbd14a), transcript variant 2, mRNA Length = 6893 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 tggagaggcagagggtggtg 330 |||||||||||||||||||| Sbjct: 3334 tggagaggcagagggtggtg 3315
>ref|NM_026495.3| Mus musculus BTB (POZ) domain containing 14A (Btbd14a), transcript variant 1, mRNA Length = 6370 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 tggagaggcagagggtggtg 330 |||||||||||||||||||| Sbjct: 2811 tggagaggcagagggtggtg 2792
>gb|AC142406.2| Mus musculus BAC clone RP24-531P16 from chromosome 9, complete sequence Length = 169938 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ccctccccctgctcccaacc 114 |||||||||||||||||||| Sbjct: 146082 ccctccccctgctcccaacc 146063
>gb|AC116460.10| Mus musculus chromosome 10, clone RP23-244G12, complete sequence Length = 203330 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 ccctccccctgctcccaacc 114 |||||||||||||||||||| Sbjct: 62142 ccctccccctgctcccaacc 62161
>gb|AC127363.3| Mus musculus BAC clone RP23-1D23 from chromosome 8, complete sequence Length = 180977 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 ccctccccctgctcccaacc 114 |||||||||||||||||||| Sbjct: 75737 ccctccccctgctcccaacc 75756
>gb|AC140436.3| Mus musculus BAC clone RP23-85O2 from chromosome 9, complete sequence Length = 142560 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ccctccccctgctcccaacc 114 |||||||||||||||||||| Sbjct: 68630 ccctccccctgctcccaacc 68611
>gb|AC124352.2| Mus musculus BAC clone RP24-477C23 from chromosome 9, complete sequence Length = 177886 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ccctccccctgctcccaacc 114 |||||||||||||||||||| Sbjct: 104239 ccctccccctgctcccaacc 104220
>gb|AC116621.8| Homo sapiens BAC clone RP11-281H2 from 4, complete sequence Length = 53135 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 agggtggtggtggtgggtgg 341 |||||||||||||||||||| Sbjct: 21038 agggtggtggtggtgggtgg 21057
>gb|AC129325.4| Mus musculus BAC clone RP23-255J24 from 1, complete sequence Length = 194106 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ggacagatggatggtctcct 250 |||||||||||||||||||| Sbjct: 176801 ggacagatggatggtctcct 176782
>emb|Z82249.1|HSN4D6 Human DNA sequence from clone LL22NC03-4D6 on chromosome 22, complete sequence Length = 37512 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 gggggatggagaggcagagg 324 |||||||||||||||||||| Sbjct: 21432 gggggatggagaggcagagg 21413
>emb|AL592309.24| Human DNA sequence from clone RP11-293F5 on chromosome 1 Contains a novel gene, a novel pseudogene, a novel gene similar to heparan sulfate 6-O-sulfotransferase 1 (HS6ST1), a pseudogene similar to part of a novel gene, the gene for a hypothetical protein AE2, a profilin 1 (PFN1) pseudogene, the 5' end of the ALPL gene for alkaline phosphatase, liver/bone/kidney and a CpG island, complete sequence Length = 206231 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 ggggatggagaggcagaggg 325 |||||||||||||||||||| Sbjct: 192992 ggggatggagaggcagaggg 193011
>emb|AL450283.16| Human DNA sequence from clone RP11-443P11 on chromosome 9 Contains the DCTN3 gene for dynactin 3 (p22), a dead ringer like-1 (Drosophila) protein (DRIL1) pseudogene, the SR-BP1 gene for sigma receptor (SR31747 binding protein 1), the 5' end of a variant of the GALT gene for galactose-1-phosphate uridylytransferase and three CpG islands, complete sequence Length = 34008 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 gcagagggtggtggtggtgggtgg 341 |||||||||||||| ||||||||| Sbjct: 15132 gcagagggtggtgggggtgggtgg 15155
>emb|AL359815.26| Human DNA sequence from clone RP11-63N8 on chromosome 1 Contains the 3' end of the ALPL gene for alkaline phosphatase, liver/bone/kidney, the RAP1GA1 gene for RAP1, GTPase activating protein 1, a novel gene, the 3' end of the USP31 gene for ubiquitin specific protease 31 and a CpG island, complete sequence Length = 149651 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 ggggatggagaggcagaggg 325 |||||||||||||||||||| Sbjct: 27476 ggggatggagaggcagaggg 27495
>emb|AL358215.16| Human DNA sequence from clone RP11-470L19 on chromosome 1 Contains the 3' end of the PROK1 gene for Prokineticin 1, a putatative novel transcript, an unprocessed pseudogene, a novel transcript and the LOC395116 gene for the shaker subfamily potassium channel KCNA10, complete sequence Length = 101529 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gcagagggtggtggtggtgg 337 |||||||||||||||||||| Sbjct: 76560 gcagagggtggtggtggtgg 76579
>emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chromosome 13 Contains a novel gene and a CpG island, complete sequence Length = 190101 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccttctccattcttcaactc 137 |||||||||||||||||||| Sbjct: 98944 ccttctccattcttcaactc 98963
>gb|AF311103.5| Homo sapiens chromosome 8 clone SCb-212E3 map p21-p11, complete sequence Length = 234429 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gggtggtggtggtgggtgga 342 |||||||||||||||||||| Sbjct: 25134 gggtggtggtggtgggtgga 25153
>emb|AL109618.1|HSJ775C13 Human DNA sequence from clone RP4-775C13 on chromosome 20p12.1-13 Contains an NS1-associated protein 1 (NSAP1) pseudogene, complete sequence Length = 103819 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 cagagggtggtggtggtggg 338 |||||||||||||||||||| Sbjct: 6950 cagagggtggtggtggtggg 6969
>gb|AC137988.2| Trypanosoma cruzi strain Brener chromosome 3 clone cosmids 1o17, 1m17, 1b21, 2n11, complete sequence Length = 105864 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 cagagggtggtggtggtggg 338 |||||||||||||||||||| Sbjct: 99302 cagagggtggtggtggtggg 99321
>emb|Y08297.1|ZMHMGC1 Z.mays mRNA for HMGc1 protein Length = 784 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 cagagggtggtggtggtggg 338 |||||||||||||||||||| Sbjct: 20 cagagggtggtggtggtggg 1
>gb|AC162948.4| Mus musculus BAC clone RP23-14N2 from chromosome 9, complete sequence Length = 221791 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 ccctccccctgctcccaacc 114 |||||||||||||||||||| Sbjct: 100009 ccctccccctgctcccaacc 100028
>emb|AJ131374.1|ZMA131374 Zea mays hmgc1 gene, exons 1-7 Length = 2929 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 cagagggtggtggtggtggg 338 |||||||||||||||||||| Sbjct: 1111 cagagggtggtggtggtggg 1092
>gb|AC091026.6| Homo sapiens chromosome 8, clone CTD-2584D11, complete sequence Length = 81523 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 taggccaggccagggtccct 98 |||||||||||||||||||| Sbjct: 63101 taggccaggccagggtccct 63082
>emb|AL645842.15| Mouse DNA sequence from clone RP23-20A9 on chromosome 11 Contains two novel genes and the 3' end of the Accn1 gene for neuronal amiloride-sensitive cation channel 1 (degenerin), complete sequence Length = 114190 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 gaggcagagggtggtggtggtggg 338 ||||||| |||||||||||||||| Sbjct: 87698 gaggcagggggtggtggtggtggg 87721
>gb|AF512431.1| Saccharothrix mutabilis subsp. capreolus nonribosomal peptide synthetase gene cluster, partial sequence Length = 28890 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 gccggccggcagcgccatggacag 236 ||||||||||||||||||| |||| Sbjct: 1387 gccggccggcagcgccatgcacag 1364
>gb|AC097494.3| Homo sapiens BAC clone RP11-273B19 from 4, complete sequence Length = 144135 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 accttctccattcttcaact 136 |||||||||||||||||||| Sbjct: 139971 accttctccattcttcaact 139990
>dbj|AK147310.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1011O21 product:BTB (POZ) domain containing 14A, full insert sequence Length = 2998 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 tggagaggcagagggtggtg 330 |||||||||||||||||||| Sbjct: 2911 tggagaggcagagggtggtg 2892
>dbj|AK147293.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1009H13 product:BTB (POZ) domain containing 14A, full insert sequence Length = 6369 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 tggagaggcagagggtggtg 330 |||||||||||||||||||| Sbjct: 2811 tggagaggcagagggtggtg 2792
>gb|AC021355.8| Homo sapiens, clone RP11-24P4, complete sequence Length = 154561 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 taggccaggccagggtccct 98 |||||||||||||||||||| Sbjct: 25019 taggccaggccagggtccct 25000
>gb|AC126687.3| Mus musculus BAC clone RP23-149L23 from chromosome 12, complete sequence Length = 186742 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 gcatcttaataatggtagca 46 |||||||||||||||||||| Sbjct: 82971 gcatcttaataatggtagca 82952
>dbj|AK002942.1| Mus musculus adult male brain cDNA, RIKEN full-length enriched library, clone:0710001D09 product:unclassifiable, full insert sequence Length = 1055 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 tggagaggcagagggtggtg 330 |||||||||||||||||||| Sbjct: 970 tggagaggcagagggtggtg 951
>ref|NG_002370.1| Homo sapiens NS1-associated protein 1 pseudogene (LOC149844) on chromosome 20 Length = 2758 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 cagagggtggtggtggtggg 338 |||||||||||||||||||| Sbjct: 267 cagagggtggtggtggtggg 286
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 gagaggcagagggtggtggt 332 |||||||||||||||||||| Sbjct: 693181 gagaggcagagggtggtggt 693200
>gb|AC073143.7| Homo sapiens BAC clone RP11-764P23 from 2, complete sequence Length = 56495 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 cagagggtggtggtggtgggtgga 342 |||| ||||||||||||||||||| Sbjct: 252 cagatggtggtggtggtgggtgga 229
>gb|AC107485.4| Homo sapiens BAC clone RP11-801O2 from 2, complete sequence Length = 21502 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 cagagggtggtggtggtgggtgga 342 |||| ||||||||||||||||||| Sbjct: 19754 cagatggtggtggtggtgggtgga 19731
>gb|AC073947.46| Mus musculus strain C57BL/6J chromosome 9 clone rp23-80d20, complete sequence Length = 247089 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gggtggtggtggtgggtgga 342 |||||||||||||||||||| Sbjct: 159451 gggtggtggtggtgggtgga 159432
>gb|AC132394.3| Mus musculus BAC clone RP23-391F16 from chromosome 6, complete sequence Length = 197171 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 agggtggtggtggtgggtgg 341 |||||||||||||||||||| Sbjct: 114089 agggtggtggtggtgggtgg 114070
>dbj|AP003874.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_G09 Length = 115815 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 gagaggcagagggtggtggt 332 |||||||||||||||||||| Sbjct: 31712 gagaggcagagggtggtggt 31731
>dbj|AK200023.1| Mus musculus cDNA, clone:Y1G0133C02, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000028300, based on BLAT search Length = 172 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 tggagaggcagagggtggtg 330 |||||||||||||||||||| Sbjct: 74 tggagaggcagagggtggtg 55
>dbj|AK193169.1| Mus musculus cDNA, clone:Y1G0111E19, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000028300, based on BLAT search Length = 172 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 tggagaggcagagggtggtg 330 |||||||||||||||||||| Sbjct: 74 tggagaggcagagggtggtg 55
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 agaggcagagggtggtggtggtgg 337 ||||| |||||||||||||||||| Sbjct: 1115657 agaggtagagggtggtggtggtgg 1115680
>dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1513_F02 Length = 126845 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 gagaggcagagggtggtggt 332 |||||||||||||||||||| Sbjct: 12988 gagaggcagagggtggtggt 13007
>emb|AL671906.15| Mouse DNA sequence from clone RP23-300B11 on chromosome X, complete sequence Length = 216692 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 ccctccccctgctcccaacc 114 |||||||||||||||||||| Sbjct: 187079 ccctccccctgctcccaacc 187098
>gb|AC153531.5| Mus musculus 10 BAC RP23-22C3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 186219 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 ccctccccctgctcccaacc 114 |||||||||||||||||||| Sbjct: 140457 ccctccccctgctcccaacc 140476
>dbj|AP001302.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K24A2 Length = 30648 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cacaccttctccattcttca 133 |||||||||||||||||||| Sbjct: 20794 cacaccttctccattcttca 20813
>gb|AC153653.4| Mus musculus BAC clone RP23-454L5 from 1, complete sequence Length = 180403 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ggacagatggatggtctcct 250 |||||||||||||||||||| Sbjct: 41239 ggacagatggatggtctcct 41258
>gb|AC159275.6| Mus musculus BAC clone RP23-367C13 from chromosome 8, complete sequence Length = 195034 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ccctccccctgctcccaacc 114 |||||||||||||||||||| Sbjct: 31330 ccctccccctgctcccaacc 31311
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 tgccggccggcagcgccatg 231 |||||||||||||||||||| Sbjct: 359414 tgccggccggcagcgccatg 359395
>gb|BC070453.1| Mus musculus cDNA clone IMAGE:30620944, containing frame-shift errors Length = 3220 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 tggagaggcagagggtggtg 330 |||||||||||||||||||| Sbjct: 3113 tggagaggcagagggtggtg 3094
>gb|AC145911.4| Gallus gallus BAC clone CH261-47H12 from chromosome unknown, complete sequence Length = 210020 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 gcagagggtggtggtggtgg 337 |||||||||||||||||||| Sbjct: 162774 gcagagggtggtggtggtgg 162793
>gb|BC022103.1| Mus musculus BTB (POZ) domain containing 14A, mRNA (cDNA clone MGC:35653 IMAGE:5067063), complete cds Length = 2877 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 tggagaggcagagggtggtg 330 |||||||||||||||||||| Sbjct: 2775 tggagaggcagagggtggtg 2756
>emb|CT025680.8| Mouse DNA sequence from clone RP24-84H10 on chromosome 9, complete sequence Length = 243795 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gggtggtggtggtgggtgga 342 |||||||||||||||||||| Sbjct: 97953 gggtggtggtggtgggtgga 97934
>emb|AL845455.7| Mouse DNA sequence from clone RP23-325E4 on chromosome 2, complete sequence Length = 143689 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 tggagaggcagagggtggtg 330 |||||||||||||||||||| Sbjct: 60303 tggagaggcagagggtggtg 60322
>dbj|AP006679.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT36G06, TM0372b, complete sequence Length = 38210 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gggtggtggtggtgggtgga 342 |||||||||||||||||||| Sbjct: 34924 gggtggtggtggtgggtgga 34943
>dbj|AP004517.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT14B06, TM0045, complete sequence Length = 113139 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 gagggtggtggtggtgggtg 340 |||||||||||||||||||| Sbjct: 47612 gagggtggtggtggtgggtg 47631
>emb|AL732441.10| Mouse DNA sequence from clone RP23-142N2 on chromosome 2, complete sequence Length = 194006 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ccctccccctgctcccaacc 114 |||||||||||||||||||| Sbjct: 129002 ccctccccctgctcccaacc 128983 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,323,348 Number of Sequences: 3902068 Number of extensions: 3323348 Number of successful extensions: 198307 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 197816 Number of HSP's gapped (non-prelim): 493 length of query: 342 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 320 effective length of database: 17,147,199,772 effective search space: 5487103927040 effective search space used: 5487103927040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)