ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart36g11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009008.1| Triticum aestivum clone wdk3c.pk0003.a5:fis, full insert mRNA sequence Length = 548 Score = 767 bits (387), Expect = 0.0 Identities = 449/472 (95%) Strand = Plus / Minus Query: 23 catccgcatcagccgccgccggaaccagggaggcggggatacgtcgcgatgcagccaaca 82 |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct: 545 catccgcatcagccgccgccggaaccggggaggcggcgatacgtcgcgatgcagccaaca 486 Query: 83 taccagccgccaatgaacggccagcatgcgcctcagtcgcaggcctctggggctccgcct 142 |||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||| Sbjct: 485 taccagccgccaatgaacggccagcacgcgcctcagccgaaggcctctggggctccgccg 426 Query: 143 cctcctccgcagcaggnnnnnnngccgcagcagtactaccaggcgccgccgcagtactac 202 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 425 cctcctctgcagcaggcacccccgccgcagcagtactaccaggcgccgccgcagtactac 366 Query: 203 cagcagggacccccgccggcggtgtggggccatccgcagcagcatatgcctccgcagtac 262 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct: 365 cagcagggacccccgccggcgatgtggggccacccgcagcagcatatgcctccgcagtac 306 Query: 263 gcgcccccgccgcagcagtacgcgcctcagcctcctcagcagtacgcgccgccaccgcag 322 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 305 gcgcctccgccgcagcagtacgcgcctcagcctcctcagcagtacgcgccgccgccgcag 246 Query: 323 cattacgcgccgcctccgccgcagtacggagcgcagatggctggcgggcctcctcccgga 382 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 245 cattacgcgccgccgccgccgcagtacggagcgcagatggctggcgggccgcctcccgga 186 Query: 383 ggcgaggatatcaggtcgctgtggattggagatcttcagtactggatggatgagacctac 442 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 185 ggcgaggatatcaggtcgctgtggatcggagatctccagtactggatggatgagacctac 126 Query: 443 ctctacaacgcctttgcgcctgtggggccgcagcaggttacctcagtgaaaa 494 |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 125 ctctacaacgcctttgcgcctgtggggccgcagcaggtcacctcagtgaaaa 74
>ref|XM_478418.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1302 Score = 151 bits (76), Expect = 3e-33 Identities = 144/167 (86%), Gaps = 6/167 (3%) Strand = Plus / Plus Query: 299 cagcagtacgcgccgccaccgcagcattacgcgccgcctccgccgcag------tacgga 352 ||||||||||| || || || ||||||||||||||||| ||||||||| ||||| Sbjct: 73 cagcagtacgcacctccccctcagcattacgcgccgccgccgccgcagcagcagtacggg 132 Query: 353 gcgcagatggctggcgggcctcctcccggaggcgaggatatcaggtcgctgtggattgga 412 |||||||||||||||||||| |||| |||||||| || ||||||||||||||||| || Sbjct: 133 gcgcagatggctggcgggcccgctccgggaggcgacgagatcaggtcgctgtggatcggg 192 Query: 413 gatcttcagtactggatggatgagacctacctctacaacgcctttgc 459 ||||| ||||||||||||||||||| |||||||| |||||| ||||| Sbjct: 193 gatctccagtactggatggatgagagctacctctccaacgcttttgc 239
>ref|XM_478419.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1156 Score = 151 bits (76), Expect = 3e-33 Identities = 144/167 (86%), Gaps = 6/167 (3%) Strand = Plus / Plus Query: 299 cagcagtacgcgccgccaccgcagcattacgcgccgcctccgccgcag------tacgga 352 ||||||||||| || || || ||||||||||||||||| ||||||||| ||||| Sbjct: 173 cagcagtacgcacctccccctcagcattacgcgccgccgccgccgcagcagcagtacggg 232 Query: 353 gcgcagatggctggcgggcctcctcccggaggcgaggatatcaggtcgctgtggattgga 412 |||||||||||||||||||| |||| |||||||| || ||||||||||||||||| || Sbjct: 233 gcgcagatggctggcgggcccgctccgggaggcgacgagatcaggtcgctgtggatcggg 292 Query: 413 gatcttcagtactggatggatgagacctacctctacaacgcctttgc 459 ||||| ||||||||||||||||||| |||||||| |||||| ||||| Sbjct: 293 gatctccagtactggatggatgagagctacctctccaacgcttttgc 339
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 151 bits (76), Expect = 3e-33 Identities = 144/167 (86%), Gaps = 6/167 (3%) Strand = Plus / Plus Query: 299 cagcagtacgcgccgccaccgcagcattacgcgccgcctccgccgcag------tacgga 352 ||||||||||| || || || ||||||||||||||||| ||||||||| ||||| Sbjct: 19867036 cagcagtacgcacctccccctcagcattacgcgccgccgccgccgcagcagcagtacggg 19867095 Query: 353 gcgcagatggctggcgggcctcctcccggaggcgaggatatcaggtcgctgtggattgga 412 |||||||||||||||||||| |||| |||||||| || ||||||||||||||||| || Sbjct: 19867096 gcgcagatggctggcgggcccgctccgggaggcgacgagatcaggtcgctgtggatcggg 19867155 Query: 413 gatcttcagtactggatggatgagacctacctctacaacgcctttgc 459 ||||| ||||||||||||||||||| |||||||| |||||| ||||| Sbjct: 19867156 gatctccagtactggatggatgagagctacctctccaacgcttttgc 19867202
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0036M16 Length = 158880 Score = 151 bits (76), Expect = 3e-33 Identities = 144/167 (86%), Gaps = 6/167 (3%) Strand = Plus / Plus Query: 299 cagcagtacgcgccgccaccgcagcattacgcgccgcctccgccgcag------tacgga 352 ||||||||||| || || || ||||||||||||||||| ||||||||| ||||| Sbjct: 31686 cagcagtacgcacctccccctcagcattacgcgccgccgccgccgcagcagcagtacggg 31745 Query: 353 gcgcagatggctggcgggcctcctcccggaggcgaggatatcaggtcgctgtggattgga 412 |||||||||||||||||||| |||| |||||||| || ||||||||||||||||| || Sbjct: 31746 gcgcagatggctggcgggcccgctccgggaggcgacgagatcaggtcgctgtggatcggg 31805 Query: 413 gatcttcagtactggatggatgagacctacctctacaacgcctttgc 459 ||||| ||||||||||||||||||| |||||||| |||||| ||||| Sbjct: 31806 gatctccagtactggatggatgagagctacctctccaacgcttttgc 31852
>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0650C03 Length = 144337 Score = 151 bits (76), Expect = 3e-33 Identities = 144/167 (86%), Gaps = 6/167 (3%) Strand = Plus / Plus Query: 299 cagcagtacgcgccgccaccgcagcattacgcgccgcctccgccgcag------tacgga 352 ||||||||||| || || || ||||||||||||||||| ||||||||| ||||| Sbjct: 107195 cagcagtacgcacctccccctcagcattacgcgccgccgccgccgcagcagcagtacggg 107254 Query: 353 gcgcagatggctggcgggcctcctcccggaggcgaggatatcaggtcgctgtggattgga 412 |||||||||||||||||||| |||| |||||||| || ||||||||||||||||| || Sbjct: 107255 gcgcagatggctggcgggcccgctccgggaggcgacgagatcaggtcgctgtggatcggg 107314 Query: 413 gatcttcagtactggatggatgagacctacctctacaacgcctttgc 459 ||||| ||||||||||||||||||| |||||||| |||||| ||||| Sbjct: 107315 gatctccagtactggatggatgagagctacctctccaacgcttttgc 107361
>dbj|AK062798.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C10, full insert sequence Length = 1157 Score = 151 bits (76), Expect = 3e-33 Identities = 144/167 (86%), Gaps = 6/167 (3%) Strand = Plus / Plus Query: 299 cagcagtacgcgccgccaccgcagcattacgcgccgcctccgccgcag------tacgga 352 ||||||||||| || || || ||||||||||||||||| ||||||||| ||||| Sbjct: 174 cagcagtacgcacctccccctcagcattacgcgccgccgccgccgcagcagcagtacggg 233 Query: 353 gcgcagatggctggcgggcctcctcccggaggcgaggatatcaggtcgctgtggattgga 412 |||||||||||||||||||| |||| |||||||| || ||||||||||||||||| || Sbjct: 234 gcgcagatggctggcgggcccgctccgggaggcgacgagatcaggtcgctgtggatcggg 293 Query: 413 gatcttcagtactggatggatgagacctacctctacaacgcctttgc 459 ||||| ||||||||||||||||||| |||||||| |||||| ||||| Sbjct: 294 gatctccagtactggatggatgagagctacctctccaacgcttttgc 340
>gb|BT018852.1| Zea mays clone EL01N0555H08.d mRNA sequence Length = 1780 Score = 79.8 bits (40), Expect = 8e-12 Identities = 63/70 (90%), Gaps = 3/70 (4%) Strand = Plus / Plus Query: 401 ctgtggattggagatcttcagtactggatggatgagaccta---cctctacaacgccttt 457 |||||||||||||||||||||||||||||||| |||| ||| || |||||||||||| Sbjct: 466 ctgtggattggagatcttcagtactggatggacgagaactatctccactacaacgccttc 525 Query: 458 gcgcctgtgg 467 |||||||||| Sbjct: 526 gcgcctgtgg 535 Score = 61.9 bits (31), Expect = 2e-06 Identities = 60/69 (86%), Gaps = 3/69 (4%) Strand = Plus / Plus Query: 254 ccgcagtacgcgcccccgccgcagcagtacgcgcctcagcctcctcagcagtacgcgccg 313 |||||||||||||| ||||||| ||||||||||||| || || ||||||||||||| | Sbjct: 346 ccgcagtacgcgcctccgccgccgcagtacgcgcct---ccgccgcagcagtacgcgcag 402 Query: 314 ccaccgcag 322 || |||||| Sbjct: 403 ccgccgcag 411 Score = 56.0 bits (28), Expect = 1e-04 Identities = 72/86 (83%), Gaps = 3/86 (3%) Strand = Plus / Plus Query: 256 gcagtacgcgcccccgccgcagcagtacgcgcctcagcctcctcagcagtacgcgccgcc 315 ||||||||| | ||||||| |||||||||||||| ||| || |||||||||||| || Sbjct: 327 gcagtacgccgctccgccgccgcagtacgcgcctccgccgcc---gcagtacgcgcctcc 383 Query: 316 accgcagcattacgcgccgcctccgc 341 |||||||| ||||||| ||| |||| Sbjct: 384 gccgcagcagtacgcgcagccgccgc 409 Score = 44.1 bits (22), Expect = 0.43 Identities = 43/50 (86%) Strand = Plus / Plus Query: 301 gcagtacgcgccgccaccgcagcattacgcgccgcctccgccgcagtacg 350 |||||||||||| || |||| ||| |||||||| || |||| |||||||| Sbjct: 348 gcagtacgcgcctccgccgccgcagtacgcgcctccgccgcagcagtacg 397 Score = 44.1 bits (22), Expect = 0.43 Identities = 67/82 (81%) Strand = Plus / Plus Query: 269 ccgccgcagcagtacgcgcctcagcctcctcagcagtacgcgccgccaccgcagcattac 328 |||| |||||||||||| ||| ||| | ||||||||||| | || |||| ||| ||| Sbjct: 295 ccgcagcagcagtacgccgctccgccgcagcagcagtacgccgctccgccgccgcagtac 354 Query: 329 gcgccgcctccgccgcagtacg 350 ||||| || ||||||||||||| Sbjct: 355 gcgcctccgccgccgcagtacg 376 Score = 44.1 bits (22), Expect = 0.43 Identities = 46/54 (85%) Strand = Plus / Plus Query: 256 gcagtacgcgcccccgccgcagcagtacgcgcctcagcctcctcagcagtacgc 309 ||||||||| || || |||||||||||||| |||| ||| | ||||||||||| Sbjct: 258 gcagtacgctccaccaccgcagcagtacgcccctccgccgcagcagcagtacgc 311 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 188 ccgccgcagtactaccagcagggaccccc 216 ||||| ||||||||||||||||| ||||| Sbjct: 166 ccgcctcagtactaccagcagggtccccc 194 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 299 cagcagtacgcgccgccaccgcagcattacgc 330 ||||||||||| || ||||||||||| ||||| Sbjct: 256 cagcagtacgctccaccaccgcagcagtacgc 287
>gb|AY109669.1| Zea mays CL866_1 mRNA sequence Length = 1821 Score = 79.8 bits (40), Expect = 8e-12 Identities = 63/70 (90%), Gaps = 3/70 (4%) Strand = Plus / Plus Query: 401 ctgtggattggagatcttcagtactggatggatgagaccta---cctctacaacgccttt 457 |||||||||||||||||||||||||||||||| |||| ||| || |||||||||||| Sbjct: 479 ctgtggattggagatcttcagtactggatggacgagaactatctccactacaacgccttc 538 Query: 458 gcgcctgtgg 467 |||||||||| Sbjct: 539 gcgcctgtgg 548
>gb|AY107556.1| Zea mays PCO141359 mRNA sequence Length = 378 Score = 73.8 bits (37), Expect = 5e-10 Identities = 63/71 (88%), Gaps = 3/71 (4%) Strand = Plus / Plus Query: 393 tcaggtcgctgtggattggagatcttcagtactggatggatgagacctacct---ctaca 449 ||||| |||||||||| |||||||||||| |||||||||| |||| |||||| ||||| Sbjct: 250 tcaggacgctgtggatcggagatcttcagcactggatggacgagaactacctccactaca 309 Query: 450 acgcctttgcg 460 ||||||||||| Sbjct: 310 acgcctttgcg 320 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 272 ccgcagcagtacgcgcctcagcctcctcagcagtacgcgccgccaccgcagca 324 |||||||||||||| |||| ||| | ||||||||||| || ||||||||||| Sbjct: 150 ccgcagcagtacgcccctctgccgcagcagcagtacgctcctccaccgcagca 202 Score = 40.1 bits (20), Expect = 6.7 Identities = 64/78 (82%), Gaps = 3/78 (3%) Strand = Plus / Plus Query: 256 gcagtacgcgcccccgccgcagcagtacgcgcctcagcctc---ctcagcagtacgcgcc 312 ||||||||| | ||||||| ||||||| |||||| ||||| | ||||| |||||| | Sbjct: 86 gcagtacgctgcaccgccgccgcagtacccgcctccgcctcagacgcagcattacgcgac 145 Query: 313 gccaccgcagcattacgc 330 ||||||||||| ||||| Sbjct: 146 accaccgcagcagtacgc 163
>ref|XM_480466.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1284 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 393 tcaggtcgctgtggattggagatcttcagtactggatggatgagacctac 442 ||||| |||| ||||| || ||||| ||||||||||||||||||| |||| Sbjct: 281 tcaggacgctctggatcggggatctccagtactggatggatgagaactac 330 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 319 gcagcattacgcgccgcctccgccgcag 346 |||||| ||||||||||| ||||||||| Sbjct: 99 gcagcagtacgcgccgccgccgccgcag 126
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 393 tcaggtcgctgtggattggagatcttcagtactggatggatgagacctac 442 ||||| |||| ||||| || ||||| ||||||||||||||||||| |||| Sbjct: 5266428 tcaggacgctctggatcggggatctccagtactggatggatgagaactac 5266379 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 319 gcagcattacgcgccgcctccgccgcag 346 |||||| ||||||||||| ||||||||| Sbjct: 5266610 gcagcagtacgcgccgccgccgccgcag 5266583
>dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1099H05 Length = 186036 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 393 tcaggtcgctgtggattggagatcttcagtactggatggatgagacctac 442 ||||| |||| ||||| || ||||| ||||||||||||||||||| |||| Sbjct: 134784 tcaggacgctctggatcggggatctccagtactggatggatgagaactac 134735 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 319 gcagcattacgcgccgcctccgccgcag 346 |||||| ||||||||||| ||||||||| Sbjct: 134966 gcagcagtacgcgccgccgccgccgcag 134939
>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0610E02 Length = 135816 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 393 tcaggtcgctgtggattggagatcttcagtactggatggatgagacctac 442 ||||| |||| ||||| || ||||| ||||||||||||||||||| |||| Sbjct: 58016 tcaggacgctctggatcggggatctccagtactggatggatgagaactac 57967 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 319 gcagcattacgcgccgcctccgccgcag 346 |||||| ||||||||||| ||||||||| Sbjct: 58198 gcagcagtacgcgccgccgccgccgcag 58171
>dbj|AK110365.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-B01, full insert sequence Length = 3201 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 282 acgcgcctcagcctcctcagcagtacgcgccgcc 315 ||||||||||||||||||||||| ||||||||| Sbjct: 1605 acgcgcctcagcctcctcagcagcccgcgccgcc 1572
>gb|AY107267.1| Zea mays PCO073795 mRNA sequence Length = 1599 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 419 cagtactggatggatgagacctacctcta 447 ||||||||||||||||||| ||||||||| Sbjct: 368 cagtactggatggatgagaactacctcta 396
>gb|AC091296.3| Pan troglodytes clone RP43-109G19, complete sequence Length = 185979 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 125 gcctctggggctccgcctcctcc 147 ||||||||||||||||||||||| Sbjct: 175023 gcctctggggctccgcctcctcc 175045
>dbj|AK072804.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135B10, full insert sequence Length = 1693 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 404 tggattggagatcttcagtactggatggatgagacctac 442 ||||| || ||||| ||||||||||||||||||| |||| Sbjct: 444 tggatcggggatctccagtactggatggatgagaactac 482
>gb|BT018695.1| Zea mays clone EL01N0513E01.d mRNA sequence Length = 1869 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 168 cgcagcagtactaccaggcgccgccgcagt 197 ||||||||||| | |||||||||||||||| Sbjct: 120 cgcagcagtaccagcaggcgccgccgcagt 149
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 102 gccagcatgcgcctcagtcgcaggcctctg 131 ||||||| |||||||||| ||||||||||| Sbjct: 112241 gccagcaagcgcctcagttgcaggcctctg 112212
>ref|XM_550383.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1365 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 gggctccgcctcctcctccgc 152 ||||||||||||||||||||| Sbjct: 222 gggctccgcctcctcctccgc 242
>ref|XM_511263.1| PREDICTED: Pan troglodytes similar to hypothetical protein (LOC454425), mRNA Length = 5721 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 cggtgtggggccatccgcagc 242 ||||||||||||||||||||| Sbjct: 3593 cggtgtggggccatccgcagc 3573
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 attacgcgccgcctccgccgc 344 ||||||||||||||||||||| Sbjct: 2243882 attacgcgccgcctccgccgc 2243862
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 attacgcgccgcctccgccgc 344 ||||||||||||||||||||| Sbjct: 3417378 attacgcgccgcctccgccgc 3417358
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 attacgcgccgcctccgccgc 344 ||||||||||||||||||||| Sbjct: 3158459 attacgcgccgcctccgccgc 3158439
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 gggctccgcctcctcctccgc 152 ||||||||||||||||||||| Sbjct: 4080537 gggctccgcctcctcctccgc 4080557
>gb|AC097370.10| Homo sapiens chromosome 17, clone CTD-2513A7, complete sequence Length = 158207 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 cggtgtggggccatccgcagc 242 ||||||||||||||||||||| Sbjct: 149707 cggtgtggggccatccgcagc 149727
>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0509B06 Length = 104515 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 gggctccgcctcctcctccgc 152 ||||||||||||||||||||| Sbjct: 47280 gggctccgcctcctcctccgc 47300
>gb|AC015921.20| Homo sapiens chromosome 17, clone CTD-3060P21, complete sequence Length = 140386 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 cggtgtggggccatccgcagc 242 ||||||||||||||||||||| Sbjct: 6288 cggtgtggggccatccgcagc 6308
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406H10 Length = 156419 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 gggctccgcctcctcctccgc 152 ||||||||||||||||||||| Sbjct: 27508 gggctccgcctcctcctccgc 27528
>gb|DQ284458.1| Solanum tuberosum clone 032F12 DNA-binding protein-like mRNA, complete cds Length = 1359 Score = 42.1 bits (21), Expect = 1.7 Identities = 48/57 (84%) Strand = Plus / Plus Query: 379 cggaggcgaggatatcaggtcgctgtggattggagatcttcagtactggatggatga 435 |||| |||| |||| |||| || | |||||||| ||||||||| | ||||||||||| Sbjct: 269 cggaagcgaagataacaggacgatctggattggcgatcttcagcagtggatggatga 325
>gb|AC092244.2| Drosophila melanogaster clone BACR19N22, complete sequence Length = 171000 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ctggggctccgcctcctcctccgc 152 |||| ||||||||||||||||||| Sbjct: 110813 ctggtgctccgcctcctcctccgc 110790
>ref|XM_957434.1| Neurospora crassa OR74A hypothetical protein (NCU08314.1) partial mRNA Length = 516 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 taccagcagggacccccgcc 219 |||||||||||||||||||| Sbjct: 298 taccagcagggacccccgcc 317
>ref|XM_329019.1| Neurospora crassa OR74A hypothetical protein (NCU08314.1) partial mRNA Length = 516 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 taccagcagggacccccgcc 219 |||||||||||||||||||| Sbjct: 298 taccagcagggacccccgcc 317
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 accgcagcattacgcgccgc 335 |||||||||||||||||||| Sbjct: 1983121 accgcagcattacgcgccgc 1983102
>ref|XM_898196.2| PREDICTED: Mus musculus AT rich interactive domain 1B (Swi1 like), transcript variant 3 (Arid1b), mRNA Length = 1156 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 236 ccgcagcagcatatgcctccgcagtacg 263 ||||||||||| ||||| |||||||||| Sbjct: 256 ccgcagcagcagatgccaccgcagtacg 283
>ref|XM_983162.1| PREDICTED: Mus musculus AT rich interactive domain 1B (Swi1 like), transcript variant 4 (Arid1b), mRNA Length = 9888 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 236 ccgcagcagcatatgcctccgcagtacg 263 ||||||||||| ||||| |||||||||| Sbjct: 256 ccgcagcagcagatgccaccgcagtacg 283
>ref|XM_139711.8| PREDICTED: Mus musculus AT rich interactive domain 1B (Swi1 like), transcript variant 1 (Arid1b), mRNA Length = 11325 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 236 ccgcagcagcatatgcctccgcagtacg 263 ||||||||||| ||||| |||||||||| Sbjct: 1603 ccgcagcagcagatgccaccgcagtacg 1630
>ref|XM_973595.1| PREDICTED: Mus musculus AT rich interactive domain 1B (Swi1 like) (Arid1b), mRNA Length = 11836 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 236 ccgcagcagcatatgcctccgcagtacg 263 ||||||||||| ||||| |||||||||| Sbjct: 2114 ccgcagcagcagatgccaccgcagtacg 2141
>ref|XM_983766.1| PREDICTED: Mus musculus AT rich interactive domain 1B (Swi1 like) (Arid1b), mRNA Length = 11501 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 236 ccgcagcagcatatgcctccgcagtacg 263 ||||||||||| ||||| |||||||||| Sbjct: 1779 ccgcagcagcagatgccaccgcagtacg 1806
>gb|BC052557.1| Mus musculus AT rich interactive domain 1B (Swi1 like), mRNA (cDNA clone IMAGE:5257371) Length = 881 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 236 ccgcagcagcatatgcctccgcagtacg 263 ||||||||||| ||||| |||||||||| Sbjct: 634 ccgcagcagcagatgccaccgcagtacg 607
>gb|DP000038.2| Colobus guereza target 106 genomic scaffold Length = 481828 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 gcctcagcctcctcagcagt 305 |||||||||||||||||||| Sbjct: 74005 gcctcagcctcctcagcagt 73986
>emb|AL591038.9| Human DNA sequence from clone RP11-120E1 on chromosome 9 Contains the 5' end of gene MGC23427 and two CpG islands, complete sequence Length = 51295 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cgcctcagcctcctcagcag 304 |||||||||||||||||||| Sbjct: 1271 cgcctcagcctcctcagcag 1290
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 attacgcgccgcctccgccg 343 |||||||||||||||||||| Sbjct: 3908578 attacgcgccgcctccgccg 3908559
>emb|AL355574.27| Human DNA sequence from clone RP11-432J22 on chromosome 9 Contains the 5' end of gene DKFZp434G2311, a novel gene, the GDBR1 gene for putative glialblastoma cell differentiation-related, 3' end of gene MGC23427 and five CpG islands, complete sequence Length = 139653 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cgcctcagcctcctcagcag 304 |||||||||||||||||||| Sbjct: 138924 cgcctcagcctcctcagcag 138943
>emb|AL021808.2|HS24O18 Human DNA sequence from clone XXbac-24O18 on chromosome 6p21.31-22.2 Contains a zinc finger protein pseudogene, vomeronasal olfactory 1 receptor chromosome 6-1 pseudogene VN1R6-1P, the POM121L2 gene for POM121 membrane glycoprotein (rat homolog)-like 2, the PRSS16 gene for thymus serine protease 16, ESTs, STSs, GSSs and three CpG islands, complete sequence Length = 154066 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 cgccggaaccagggaggcgg 58 |||||||||||||||||||| Sbjct: 15124 cgccggaaccagggaggcgg 15105
>emb|AL022162.1|HS454M7 Human DNA sequence from clone RP3-454M7 on chromosome Xq25-26.3 Contains the 3' end of the OCRL gene for oculocerebrorenal syndrome of Lowe, the gene for apelin (APLN) and a CpG island, complete sequence Length = 151152 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 gcctcagcctcctcagcagt 305 |||||||||||||||||||| Sbjct: 138241 gcctcagcctcctcagcagt 138222
>emb|AL023653.1|HS753P9 Human DNA sequence from clone RP4-753P9 on chromosome Xq25-26.1 Contains the XPNPEP2 gene for X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound and the CXorf9 gene for chromosome X open reading frame 9, complete sequence Length = 116561 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 gcctcagcctcctcagcagt 305 |||||||||||||||||||| Sbjct: 10010 gcctcagcctcctcagcagt 9991
>emb|AJ292768.1|NPL292768 Nicotiana plumbaginifolia partial mRNA for RNA Binding Protein 47 (rbp47 gene) Length = 1621 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 404 tggattggagatcttcagtactggatggatga 435 |||||||| ||||||||| | ||||||||||| Sbjct: 383 tggattggtgatcttcagcagtggatggatga 414
>emb|CR848842.7| Human DNA sequence from clone WI2-2998D17 on chromosome 1, complete sequence Length = 44069 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cgcctcagcctcctcagcag 304 |||||||||||||||||||| Sbjct: 30617 cgcctcagcctcctcagcag 30636
>gb|AC103925.2| Homo sapiens chromosome 1 clone RP11-567E21, complete sequence Length = 175291 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 gcctcagcctcctcagcagt 305 |||||||||||||||||||| Sbjct: 8095 gcctcagcctcctcagcagt 8114
>dbj|AK093750.1| Homo sapiens cDNA FLJ36431 fis, clone THYMU2011785 Length = 2247 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 cgcctcagcctcctcagcag 304 |||||||||||||||||||| Sbjct: 2151 cgcctcagcctcctcagcag 2132
>gb|DP000057.1| Dasypus novemcinctus target 117 genomic scaffold Length = 444202 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 gtggggccatccgcagcagc 245 |||||||||||||||||||| Sbjct: 135427 gtggggccatccgcagcagc 135446
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ggctccgcctcctcctccgc 152 |||||||||||||||||||| Sbjct: 3579625 ggctccgcctcctcctccgc 3579606
>ref|NM_164449.1| Drosophila melanogaster Suppressor of deltex CG4244-RC, transcript variant C (Su(dx)), mRNA Length = 4174 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ctggggctccgcctcctcctccgc 152 |||| ||||||||||||||||||| Sbjct: 109 ctggtgctccgcctcctcctccgc 86
>ref|NM_164448.1| Drosophila melanogaster Suppressor of deltex CG4244-RA, transcript variant A (Su(dx)), mRNA Length = 4307 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ctggggctccgcctcctcctccgc 152 |||| ||||||||||||||||||| Sbjct: 242 ctggtgctccgcctcctcctccgc 219
>gb|AF195953.2| Homo sapiens membrane-bound aminopeptidase P (XNPEP2) gene, complete cds Length = 206618 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 gcctcagcctcctcagcagt 305 |||||||||||||||||||| Sbjct: 100041 gcctcagcctcctcagcagt 100022
>ref|NM_057405.2| Drosophila melanogaster Suppressor of deltex CG4244-RB, transcript variant B (Su(dx)), mRNA Length = 4309 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ctggggctccgcctcctcctccgc 152 |||| ||||||||||||||||||| Sbjct: 244 ctggtgctccgcctcctcctccgc 221
>dbj|AK160334.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330189K18 product:Warning: possibly chimeric clone, full insert sequence Length = 1229 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 236 ccgcagcagcatatgcctccgcagtacg 263 ||||||||||| ||||| |||||||||| Sbjct: 330 ccgcagcagcagatgccaccgcagtacg 357
>gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold Length = 583711 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 gcctcagcctcctcagcagt 305 |||||||||||||||||||| Sbjct: 88917 gcctcagcctcctcagcagt 88898
>gb|AC119427.3| Homo sapiens chromosome 1 clone RP11-27G14, complete sequence Length = 181148 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 gcctcagcctcctcagcagt 305 |||||||||||||||||||| Sbjct: 92544 gcctcagcctcctcagcagt 92525
>gb|BT021390.1| Drosophila melanogaster LD32282 full insert cDNA Length = 3715 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ctggggctccgcctcctcctccgc 152 |||| ||||||||||||||||||| Sbjct: 325 ctggtgctccgcctcctcctccgc 302
>gb|AF152865.1|AF152865 Drosophila melanogaster Suppressor of deltex (Su(dx)) mRNA, complete cds Length = 4311 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ctggggctccgcctcctcctccgc 152 |||| ||||||||||||||||||| Sbjct: 243 ctggtgctccgcctcctcctccgc 220
>gb|AE003584.5| Drosophila melanogaster chromosome 2L, section 7 of 83 of the complete sequence Length = 346734 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ctggggctccgcctcctcctccgc 152 |||| ||||||||||||||||||| Sbjct: 155497 ctggtgctccgcctcctcctccgc 155474
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 tactaccaggcgccgccgca 195 |||||||||||||||||||| Sbjct: 2779685 tactaccaggcgccgccgca 2779704
>gb|AC004716.1|AC004716 Drosophila melanogaster DNA sequence (P1 DS00164 (D269)), complete sequence Length = 86391 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ctggggctccgcctcctcctccgc 152 |||| ||||||||||||||||||| Sbjct: 11629 ctggtgctccgcctcctcctccgc 11606
>gb|U90212.1|NTU90212 Nicotiana tabacum DNA binding protein ACBF mRNA, complete cds Length = 1556 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 404 tggattggagatcttcagtactggatggatga 435 |||||||| ||||||||| | ||||||||||| Sbjct: 298 tggattggtgatcttcagcagtggatggatga 329
>gb|AF029351.1|AF029351 Nicotiana tabacum putative RNA binding protein (QRRBP-1) mRNA, partial cds Length = 1682 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 404 tggattggagatcttcagtactggatggatga 435 |||||||| ||||||||| | ||||||||||| Sbjct: 423 tggattggtgatcttcagcagtggatggatga 454
>dbj|AP006427.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45A23, TM0318, complete sequence Length = 117676 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tatcaggtcgctgtggattg 410 |||||||||||||||||||| Sbjct: 103565 tatcaggtcgctgtggattg 103584
>dbj|AP002527.1| Escherichia coli plasmid R721 genomic DNA, comlete sequence Length = 75582 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gccgccaccgcagcattacg 329 |||||||||||||||||||| Sbjct: 66722 gccgccaccgcagcattacg 66703 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,183,332 Number of Sequences: 3902068 Number of extensions: 5183332 Number of successful extensions: 107601 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106758 Number of HSP's gapped (non-prelim): 822 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
