Clone Information

BLAST Search Result

Clone Name	bart36d05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	HUPE_AZOCH (P42034) Hydrogenase expression/formation protein hupE	37	0.046
2	HYPE_AZOVI (P40595) Hydrogenase expression/formation protein hypE	32	1.1
3	VE2_HPV03 (P36778) Regulatory protein E2	32	1.5
4	MGR5_RAT (P31424) Metabotropic glutamate receptor 5 precursor (m...	32	1.5
5	HIS8_BACFR (Q64RE8) Histidinol-phosphate aminotransferase (EC 2....	31	1.9
6	HIS8_BACFN (Q5LAZ9) Histidinol-phosphate aminotransferase (EC 2....	31	1.9
7	PTPA1_NEUCR (Q7S6M5) Serine/threonine-protein phosphatase 2A act...	31	1.9
8	VNUA_PRVKA (P33485) Probable nuclear antigen	31	2.5
9	LRC41_HUMAN (Q15345) Leucine-rich repeat-containing protein 41 (...	31	2.5
10	VE2_HPV28 (P50771) Regulatory protein E2	31	2.5
11	LIX1L_MOUSE (Q8BQ89) LIX1-like protein	31	2.5
12	DBPA_XENLA (Q5PQD5) DNA-binding protein A (Cold shock domain-con...	31	2.5
13	DBPA_RAT (Q62764) DNA-binding protein A (Cold shock domain-conta...	31	2.5
14	DBPA_MOUSE (Q9JKB3) DNA-binding protein A (Cold shock domain-con...	31	2.5
15	Y05G_BPT4 (P39242) Hypothetical 38.9 kDa protein in nrdC-mobD in...	30	3.3
16	NFRKB_MOUSE (Q6PIJ4) Nuclear factor related to kappa-B-binding p...	30	3.3
17	PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precur...	30	3.3
18	CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel ...	30	3.3
19	RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)	30	3.3
20	ZN759_MOUSE (Q80VM4) Zinc finger protein 579	30	4.3
21	ZN759_HUMAN (Q8NAF0) Zinc finger protein 579	30	4.3
22	DPO3X_ECOLI (P06710) DNA polymerase III tau subunit (EC 2.7.7.7)...	30	4.3
23	DPO3X_SALTY (P74876) DNA polymerase III tau subunit (EC 2.7.7.7)...	30	4.3
24	MRE11_NEUCR (Q9C291) Double-strand break repair protein mus-23 (...	30	5.6
25	PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3	30	5.6
26	UBXD3_MOUSE (Q8BG34) UBX domain-containing protein 3	29	7.4
27	DNJA3_MOUSE (Q99M87) DnaJ homolog subfamily A member 3, mitochon...	29	7.4
28	K0552_HUMAN (O60299) Protein KIAA0552	29	7.4
29	3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)	29	7.4
30	3BP1_MOUSE (P55194) SH3 domain-binding protein 1 (3BP-1)	29	7.4
31	RPTOR_HUMAN (Q8N122) Regulatory associated protein of mTOR (Rapt...	29	9.6
32	Y1326_CAUCR (Q9A8M7) Hypothetical RNA methyltransferase CC1326 (...	29	9.6
33	VE2_HPV10 (P36781) Regulatory protein E2	29	9.6
34	RL10_PIG (Q29195) 60S ribosomal protein L10 (QM protein homolog)...	29	9.6
35	RL10_BOVIN (Q9XSI3) 60S ribosomal protein L10 (QM protein homolog)	29	9.6
36	MDC1_RAT (Q5U2M8) Mediator of DNA damage checkpoint protein 1	29	9.6
37	TLE2_HUMAN (Q04725) Transducin-like enhancer protein 2 (ESG2)	29	9.6
38	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	29	9.6
39	HGD_XANC5 (Q3BYE8) Homogentisate 1,2-dioxygenase (EC 1.13.11.5) ...	29	9.6

>HUPE_AZOCH (P42034) Hydrogenase expression/formation protein hupE|
          Length = 341

 Score = 36.6 bits (83), Expect = 0.046
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
 Frame = -1

Query: 492 QQVLPRRHPVRLVAPLLGEDEDGVAGEAKLV----AEEGPHALDVLHRAPE----LVVGA 337
           ++ +P R PVR     LG D   VA E KL+    AE+    L+V+   P+     ++G 
Sbjct: 249 ERAIPLREPVRAACEFLGLDPLYVANEGKLIAICPAEQAERLLEVMREHPQGREAAIIGT 308

Query: 336 RVADA 322
            VADA
Sbjct: 309 VVADA 313

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>HYPE_AZOVI (P40595) Hydrogenase expression/formation protein hypE|
          Length = 341

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
 Frame = -1

Query: 492 QQVLPRRHPVRLVAPLLGEDEDGVAGEAKLV----AEEGPHALDVLHRAPE----LVVGA 337
           ++ +P R PVR     LG D   VA E KL+    AE     L+ +   P+     ++G 
Sbjct: 249 ERAIPVREPVRAACEFLGLDPLYVANEGKLIAICPAERAERLLEAMRAHPQGREAAIIGT 308

Query: 336 RVAD 325
            VAD
Sbjct: 309 VVAD 312

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>VE2_HPV03 (P36778) Regulatory protein E2|
          Length = 383

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 23/77 (29%), Positives = 36/77 (46%)
 Frame = +1

Query: 121 HCGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVGAPPSPPRTVRSASRELPAGYPATRG 300
           H G  +V P + + +  R A+   V+  +   S  A    P T+R  SRE+    P    
Sbjct: 53  HIGHQVVPPLSVTKAKARSAIEVHVSLQQLQHSAHA--QDPWTLRDTSREMWDTVPKKCW 110

Query: 301 KKRAVLVGVSYTGTDHE 351
           KKR + V V Y G +++
Sbjct: 111 KKRGLTVEVRYDGDENK 127

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>MGR5_RAT (P31424) Metabotropic glutamate receptor 5 precursor (mGluR5)|
          Length = 1203

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
 Frame = -2

Query: 536  ESPAPHPSTSHRIASSRFSLVGTLYGSSLLSSVRTRMESPGKPNLSRRRVLMHSTSFTVP 357
            ++P+ H  T+ R +SS+ SL+        +SSV TR  +    N+S    +M ST+ T  
Sbjct: 1034 DAPSLHSETAARSSSSQGSLM------EQISSVVTRFTA----NISELNSMMLSTAATPG 1083

Query: 356  LSSWSVPV*LTPTRTARFLPRVAG*PAGSSRLAERT------VRGGDGGAPTLRCRSTRV 195
                      TP  ++  +P+    P   +  AE        V GG  GA  +       
Sbjct: 1084 PPG-------TPICSSYLIPKEIQLPTTMTTFAEIQPLPAIEVTGGAQGATGVSPAQETP 1136

Query: 194  TRRQSAHRTPELDPAGGATMPAP 126
            T  +SA   P+L+     T P+P
Sbjct: 1137 TGAESAPGKPDLEELVALTPPSP 1159

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>HIS8_BACFR (Q64RE8) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 345

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 316 LVGVSYTGTDHELRGTVKDVECMRTLLRDKFGFPGDSILVLTEERS 453
           +V +  T   +++   V DVE  + LL D F F  D +L + +ER+
Sbjct: 96  VVAIDPTYGMYQVCADVNDVEYRKVLLHDDFQFSADELLAVADERT 141

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>HIS8_BACFN (Q5LAZ9) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 345

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 316 LVGVSYTGTDHELRGTVKDVECMRTLLRDKFGFPGDSILVLTEERS 453
           +V +  T   +++   V DVE  + LL D F F  D +L + +ER+
Sbjct: 96  VVAIDPTYGMYQVCADVNDVEYRKVLLHDDFQFSADELLAVADERT 141

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>PTPA1_NEUCR (Q7S6M5) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 617

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 23/80 (28%), Positives = 27/80 (33%)
 Frame = +1

Query: 76  GMGNTGPPRMTSWCRHCGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVGAPPSPPRTVR 255
           G G   P     W R  GAG     AG+  G   A      R    +  G P   P T  
Sbjct: 541 GAGMAPPMTAAPWARSTGAG-----AGAGVGASAA-----NRFTPFKPAGGPGGAPHTGP 590

Query: 256 SASRELPAGYPATRGKKRAV 315
                 P+G P T   + AV
Sbjct: 591 PPPESFPSGTPGTASNQFAV 610

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>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
 Frame = +1

Query: 124  CGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVGAPPSP----PRTVRSASRELPAGYPA 291
            CG G     AG     RC  CR      R    GA P P      TV  A  E P G P 
Sbjct: 1665 CGGGRAPGAAGGPGLCRCECCR-----GRRPGPGAGPGPGPEDEVTVLGALMESPTGGPG 1719

Query: 292  TRGKKRAVLV 321
             RG    +L+
Sbjct: 1720 GRGPGLVLLL 1729

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>LRC41_HUMAN (Q15345) Leucine-rich repeat-containing protein 41 (Protein Muf1)|
          Length = 843

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 25/88 (28%), Positives = 35/88 (39%)
 Frame = +1

Query: 82  GNTGPPRMTSWCRHCGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVGAPPSPPRTVRSA 261
           G  GPP     CR CG            G      RR  R    R   A  +  R  +S 
Sbjct: 235 GPGGPP-----CRLCGEASRGRAPSRDEGSLLLGSRRPRRDAAERCAAALMASRR--KSE 287

Query: 262 SRELPAGYPATRGKKRAVLVGVSYTGTD 345
           ++++P   PATR  +R+    ++  GTD
Sbjct: 288 AKQMPRAAPATRVTRRSTQESLTAGGTD 315

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>VE2_HPV28 (P50771) Regulatory protein E2|
          Length = 376

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 24/75 (32%), Positives = 34/75 (45%)
 Frame = +1

Query: 121 HCGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVGAPPSPPRTVRSASRELPAGYPATRG 300
           H G  +V P + + +  R A+   V  ++   S  A  S   T+R  SRE+    P    
Sbjct: 53  HIGHQVVPPLSVTKAKARSAIEVHVALLQLQESAYAQDS--WTLRDTSREMWDTVPKKCW 110

Query: 301 KKRAVLVGVSYTGTD 345
           KKR V V V Y G +
Sbjct: 111 KKRGVTVEVRYDGDE 125

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>LIX1L_MOUSE (Q8BQ89) LIX1-like protein|
          Length = 337

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = -2

Query: 239 GDGGAPTLRCRSTRVTRRQSAHRTPELDPAGGATMPAPQCLHHDVILGGPVLPMP 75
           G GG  TLR     VT   ++  TP + P      PAP  L   ++ G P LP+P
Sbjct: 14  GVGGRGTLRALRPGVTGAPTSAATPPVGPPPAPPPPAPP-LPPLLLAGAPGLPLP 67

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>DBPA_XENLA (Q5PQD5) DNA-binding protein A (Cold shock domain-containing|
           protein A)
          Length = 361

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
 Frame = -1

Query: 519 PLHQPPHRQQQVLP--------RR-----HPVRLVAPLLGEDEDGVAGEAKLVAEEGPHA 379
           P ++PP+RQ++  P        RR     HP R+ A  +GE +DGV    +L A   P  
Sbjct: 218 PQYRPPYRQRRFPPYHVGQTFDRRSRVFPHPNRMQAGEIGEMKDGVPEGTQLQAHRNPTY 277

Query: 378 LDVLHRAP 355
                R P
Sbjct: 278 RPRFRRGP 285

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>DBPA_RAT (Q62764) DNA-binding protein A (Cold shock domain-containing|
           protein A) (Muscle Y-box protein YB2) (Y-box-binding
           protein-A) (RYB-A)
          Length = 361

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
 Frame = -1

Query: 519 PLHQPPHRQQQVLP--------RR-----HPVRLVAPLLGEDEDGVAGEAKLVAEEGPHA 379
           P ++PP+RQ++  P        RR     HP R+ A  +GE +DGV   A+L     P  
Sbjct: 218 PQYRPPYRQRRFPPYHVGQTFDRRSRVFPHPNRMQAGEIGEMKDGVPEGAQLQVHRNPTY 277

Query: 378 LDVLHRAP 355
                R P
Sbjct: 278 RPRFRRGP 285

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>DBPA_MOUSE (Q9JKB3) DNA-binding protein A (Cold shock domain-containing|
           protein A) (Y-box protein 3)
          Length = 361

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
 Frame = -1

Query: 519 PLHQPPHRQQQVLP--------RR-----HPVRLVAPLLGEDEDGVAGEAKLVAEEGPHA 379
           P ++PP+RQ++  P        RR     HP R+ A  +GE +DGV    +L A   P  
Sbjct: 218 PQYRPPYRQRRFPPYHVGQTFDRRSRVFPHPNRMQAGEIGEMKDGVPEGTQLQAHRNPTY 277

Query: 378 LDVLHRAP 355
                R P
Sbjct: 278 RPRFRRGP 285

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>Y05G_BPT4 (P39242) Hypothetical 38.9 kDa protein in nrdC-mobD intergenic|
           region
          Length = 336

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 408 KLVAEEGPHALDVLHRAPELVVGARVAD 325
           KL A+  P ALD+LH  PELVV + + D
Sbjct: 73  KLAADGEPVALDMLHTPPELVVKSDLPD 100

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>NFRKB_MOUSE (Q6PIJ4) Nuclear factor related to kappa-B-binding protein|
           (DNA-binding protein R kappa-B)
          Length = 1296

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
 Frame = +1

Query: 97  PRMTSWCRHCGAGIVAPPAGSSSGVRCALCRRVTRVERH---RSVGAPPSPPRTVRSASR 267
           P   S     G+  V+ PA SSSGV       + ++       S+  PPS   T R  S 
Sbjct: 734 PPPVSAVNRSGSSTVSEPAQSSSGVLLVSSPTMPQLGTMLSPASIQTPPSSQATARVVSH 793

Query: 268 ELPAGYPATRGKKRAVLVGVS 330
              AG P  R   +  L  VS
Sbjct: 794 SSSAGLPQVRVVAQPSLPAVS 814

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>PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precursor (Parotid|
           salivary glycoprotein G1) (Proline-rich protein G1)
          Length = 309

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 276 GRLPGNPRQEACRPRRRQLHGHRPRAQGHGEGRRVHEDPPPRQ 404
           G+  G+P Q   +PR    H  +P+     EG +    PPPR+
Sbjct: 223 GKPEGSPSQGGNKPRGPPPHPGKPQGPPPQEGNKPQRPPPPRR 265

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>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +3

Query: 252  ALCQSRAAGRLPGNPRQE-----ACRPRRRQLHGHRPRAQGHGEGRRVHEDPPPRQ 404
            AL  +RA  R P     E     A RPR RQ    RPR +  G GR +   P PR+
Sbjct: 2259 ALAHARARARAPARLLPELRLRRARRPRPRQRR--RPRRRRGGGGRALRRAPGPRE 2312

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>RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)|
          Length = 681

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 16/100 (16%)
 Frame = +1

Query: 58  ELTSIRGMGNTGPP-------RMTSWCR------HCGAGIVAPPAGSSSGVRCALCRRVT 198
           +LTS  G G+ GPP       RM++  R      H   G     + S +G+     RR  
Sbjct: 216 DLTSAPGRGSHGPPTRRASEARMSTAARDSEGWDHAHGGGTGDTSRSPAGL-----RRAN 270

Query: 199 RVERHRSVGAP---PSPPRTVRSASRELPAGYPATRGKKR 309
            V+  R   AP   P+PP+ V+      P G  AT G  R
Sbjct: 271 SVQAARPAPAPVPSPAPPQPVQPGP---PGGSRATPGPGR 307

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>ZN759_MOUSE (Q80VM4) Zinc finger protein 579|
          Length = 562

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 27/80 (33%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
 Frame = +1

Query: 73  RGMGNTGPPRMTSWCRHCGAGIVAP-----PAGSSSGVR---CALC----RRVTRVERHR 216
           RG G  G PR    C  CG     P        S SG+R   C LC    RR   + RH 
Sbjct: 34  RGRGGAGAPRAPLPCPTCGRLFRFPYYLSRHRLSHSGLRPHACPLCPKAFRRPAHLSRHL 93

Query: 217 SVGAPPSPPRTVRSASRELP 276
             G  P PP    +  R  P
Sbjct: 94  R-GHGPQPPLRCAACPRTFP 112

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>ZN759_HUMAN (Q8NAF0) Zinc finger protein 579|
          Length = 562

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 27/80 (33%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
 Frame = +1

Query: 73  RGMGNTGPPRMTSWCRHCGAGIVAP-----PAGSSSGVR---CALC----RRVTRVERHR 216
           RG G  G PR    C  CG     P        S SG+R   C LC    RR   + RH 
Sbjct: 32  RGRGGAGAPRAPLPCPTCGRLFRFPYYLSRHRLSHSGLRPHACPLCPKAFRRPAHLSRHL 91

Query: 217 SVGAPPSPPRTVRSASRELP 276
             G  P PP    +  R  P
Sbjct: 92  R-GHGPQPPLRCAACPRTFP 110

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>DPO3X_ECOLI (P06710) DNA polymerase III tau subunit (EC 2.7.7.7) [Contains: DNA|
           polymerase III gamma subunit]
          Length = 643

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
 Frame = +1

Query: 73  RGMGNTGPPRMTSWCRHCGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVG--APPSPPR 246
           RG+G T   R+ +   +C  GI A P        C +C     +E+ R V      +  R
Sbjct: 47  RGVGKTSIARLLAKGLNCETGITATP--------CGVCDNCREIEQGRFVDLIEIDAASR 98

Query: 247 TVRSASREL--PAGYPATRGKKRAVLVGVSYTGTDHELRGTVKDVE 378
           T    +R+L     Y   RG+ +  L+   +  + H     +K +E
Sbjct: 99  TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144

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>DPO3X_SALTY (P74876) DNA polymerase III tau subunit (EC 2.7.7.7) [Contains: DNA|
           polymerase III gamma subunit]
          Length = 642

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
 Frame = +1

Query: 73  RGMGNTGPPRMTSWCRHCGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVG--APPSPPR 246
           RG+G T   R+ +   +C  GI A P        C +C     +E+ R V      +  R
Sbjct: 47  RGVGKTSIARLLAKGLNCETGITATP--------CGVCDNCREIEQGRFVDLIEIDAASR 98

Query: 247 TVRSASREL--PAGYPATRGKKRAVLVGVSYTGTDHELRGTVKDVE 378
           T    +R+L     Y   RG+ +  L+   +  + H     +K +E
Sbjct: 99  TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144

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>MRE11_NEUCR (Q9C291) Double-strand break repair protein mus-23 (Recombinational|
           repair protein mus-23)
          Length = 760

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 533 SPAPHPSTSHRIASSRFSLVGTLYGS--SLLSSVRTRMESPGKPNLSRRRV 387
           +P P P  + R+AS+R S   T   +  +  +  R R+  P KP L  RR+
Sbjct: 709 APPPKPKATSRVASTRASARATPVRATPARATQARLRLRRPPKPGLLARRL 759

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>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3|
          Length = 981

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 17/75 (22%)
 Frame = -2

Query: 272 SSRLAER--TVRGGDGGAPTLRCRSTRVTRRQSAHRTPELDPAGGATM------------ 135
           SS++++R  +     GG+P L  RST VTR  S H+   + PA  + +            
Sbjct: 252 SSKISQRDPSPESKKGGSPGLESRSTAVTRTSSIHQL--IAPASYSPIQPHSLIKHQQIP 309

Query: 134 ---PAPQCLHHDVIL 99
              P P+  HH ++L
Sbjct: 310 LHSPPPKVSHHQLLL 324

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>UBXD3_MOUSE (Q8BG34) UBX domain-containing protein 3|
          Length = 277

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +3

Query: 285 PGNPRQEACRPR----RRQLHGHRPRAQGHGEGRRVHEDPPPR 401
           P + R    RP+    R++ + HRP+  G G    +   PPPR
Sbjct: 29  PSSLRMHVIRPKSAKGRKRPNLHRPQGMGDGSPSALSSSPPPR 71

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>DNJA3_MOUSE (Q99M87) DnaJ homolog subfamily A member 3, mitochondrial precursor|
           (Tumorous imaginal discs protein Tid56 homolog) (DnaJ
           protein Tid-1) (mTid-1)
          Length = 480

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +1

Query: 85  NTGPPRMTSWCRHCGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVGAP 231
           NTGP  M S CR CG        GS     C +CR   + ++ + V  P
Sbjct: 265 NTGPFVMRSTCRRCGG------RGSIITNPCVVCRGAGQAKQKKRVTIP 307

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>K0552_HUMAN (O60299) Protein KIAA0552|
          Length = 673

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
 Frame = +1

Query: 196 TRVERHRSVGAPPSPPRTVRSASRELPAGYPA-TRGKKRAVLVGVSYTGTDH-ELRGTVK 369
           TR     S G+ P P  +   ASRE P  YP+  +G   ++ +     G+DH ++ G V 
Sbjct: 57  TRTGGGGSQGSFPGPRGSGSGASRERPGRYPSEDKGLANSLYLNGELRGSDHTDVCGNV- 115

Query: 370 DVECMRTLLRDKFGFPGDSILVLTEERSDEPYRVPTRENLLLAMRWLVEGC 522
                        G  G S      +++   YR P+    LLA    ++ C
Sbjct: 116 ------------VGSSGGSSSSGGSDKAPPQYREPSHPPKLLATSGKLDQC 154

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>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)|
          Length = 701

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 25/75 (33%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
 Frame = +1

Query: 88  TGPPRMTSWCRHCGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVGAPPSPPR---TVRS 258
           T PP   S  R        PP   S G   AL RR+           PP PP      R 
Sbjct: 574 TMPPPQVSGSRSSPPAPPLPPGSGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPARR 633

Query: 259 ASRELPAG-YPATRG 300
            SR  PA   PA+ G
Sbjct: 634 QSRRSPASPSPASPG 648

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>3BP1_MOUSE (P55194) SH3 domain-binding protein 1 (3BP-1)|
          Length = 601

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 23/67 (34%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
 Frame = +1

Query: 88  TGPPRMTSWCRHCGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVGAPPSPPR---TVRS 258
           T PP   S  R        PP   S G   AL RR+           PP PP      R 
Sbjct: 486 TMPPPQPSSTRSSPPAPSLPPGSVSPGTPQALPRRLVGTSLRAPTMPPPLPPVPPQPARR 545

Query: 259 ASRELPA 279
            SR LPA
Sbjct: 546 QSRRLPA 552

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>RPTOR_HUMAN (Q8N122) Regulatory associated protein of mTOR (Raptor) (P150 target|
            of rapamycin (TOR)-scaffold protein)
          Length = 1335

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
 Frame = +1

Query: 202  VERHRSVGAPPSPPRTVRS---------ASRELPAGYPATRGKKRAVLVGVSYTGTDHEL 354
            V  H++ G+PP+   +  S          SR+LP+G P T G       G  YT   H+ 
Sbjct: 869  VHIHQAGGSPPASSTSSSSLTNDVAKQPVSRDLPSGRPGTTGP-----AGAQYTPHSHQF 923

Query: 355  RGTVK 369
              T K
Sbjct: 924  PRTRK 928

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>Y1326_CAUCR (Q9A8M7) Hypothetical RNA methyltransferase CC1326 (EC 2.1.1.-)|
          Length = 415

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = -2

Query: 302 LPRVAG*PAGSSRLAERTVRGGDGGAPTLRCRSTRVTRRQSAHRTPELDPAGGATMPA 129
           LP  A  PA   R+A    +GG G    L  +  R     S    P  DP   A +PA
Sbjct: 103 LPTFAAPPASRRRVALHARKGGKGQGARLGFKERRSWNLVSIEECPVTDPRLVAALPA 160

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>VE2_HPV10 (P36781) Regulatory protein E2|
          Length = 376

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 23/75 (30%), Positives = 33/75 (44%)
 Frame = +1

Query: 121 HCGAGIVAPPAGSSSGVRCALCRRVTRVERHRSVGAPPSPPRTVRSASRELPAGYPATRG 300
           H G  +V P + + +  R A+   V   +   S  A    P T+R  SRE+    P    
Sbjct: 53  HIGHQVVPPLSVTKAKARNAIEVHVALQQLQESAYA--HEPWTLRDTSREMWDTAPKGCW 110

Query: 301 KKRAVLVGVSYTGTD 345
           KKR + V V Y G +
Sbjct: 111 KKRGITVEVRYDGDE 125

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>RL10_PIG (Q29195) 60S ribosomal protein L10 (QM protein homolog) (Lamin|
           receptor homolog)
          Length = 213

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +1

Query: 271 LPAGYPATRGKKRAVLVGVSYTGTDHELRGTVKDVE-CMRTLLRDKFGFPGDSILVLTEE 447
           L  G     GK +  +  V        +R  +++ E  +  L R KF FPG   + ++++
Sbjct: 110 LQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKK 169

Query: 448 RSDEPYRVPTRENLLLAMRWLVEGCG 525
                +     EN++   R + +GCG
Sbjct: 170 WGFTKFNADEFENMVAEKRLIPDGCG 195

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>RL10_BOVIN (Q9XSI3) 60S ribosomal protein L10 (QM protein homolog)|
          Length = 213

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +1

Query: 271 LPAGYPATRGKKRAVLVGVSYTGTDHELRGTVKDVE-CMRTLLRDKFGFPGDSILVLTEE 447
           L  G     GK +  +  V        +R  +++ E  +  L R KF FPG   + ++++
Sbjct: 110 LQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKK 169

Query: 448 RSDEPYRVPTRENLLLAMRWLVEGCG 525
                +     EN++   R + +GCG
Sbjct: 170 WGFTKFNADEFENMVAEKRLIPDGCG 195

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>MDC1_RAT (Q5U2M8) Mediator of DNA damage checkpoint protein 1|
          Length = 1279

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
 Frame = -2

Query: 473 GTLYGSSLLSSVRTRMESPGKPNLSRRRVLMHSTSFTVPLSSWSVPV*LTPTR--TARFL 300
           G+L G+ ++     R+ +PG  +  R + L+    F       +VP  L P    T    
Sbjct: 93  GSLNGTQIVKP--PRVLAPGVSHRLRDQELILFADFPCQYHRLNVPPPLVPRSLLTIEKT 150

Query: 299 PRVAG*PAGSS-RLAERTVRGGDGGAPTLRCRSTRVTRRQSAHRTPELDPAG---GATMP 132
           PR+ G    S   LAE +   GD  +       +R T   SA   PE D  G   G ++P
Sbjct: 151 PRIRGRSQNSRVLLAEDSEEEGDFPSGRSVANGSRNTASPSATVVPESDEEGSSPGPSVP 210

Query: 131 AP 126
            P
Sbjct: 211 GP 212

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>TLE2_HUMAN (Q04725) Transducin-like enhancer protein 2 (ESG2)|
          Length = 743

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +1

Query: 196 TRVERHRSVGAPPSPPRTVRSASRELPAGYPATRGKKRA 312
           +RVER  S  A PSPP ++     E P+G P   GK+RA
Sbjct: 182 SRVERAPSRSASPSPPESL--VEEERPSG-PGGGGKQRA 217

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 21/56 (37%), Positives = 26/56 (46%)
 Frame = +1

Query: 148 PAGSSSGVRCALCRRVTRVERHRSVGAPPSPPRTVRSASRELPAGYPATRGKKRAV 315
           P   SS VR    R  +R  RHR+    PSP    +  S ELP   P+ R K  +V
Sbjct: 182 PRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKSPELPE--PSVRMKDSSV 235

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>HGD_XANC5 (Q3BYE8) Homogentisate 1,2-dioxygenase (EC 1.13.11.5)|
           (Homogentisicase) (Homogentisate oxygenase)
           (Homogentisic acid oxidase)
          Length = 439

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 20/79 (25%), Positives = 32/79 (40%)
 Frame = +1

Query: 211 HRSVGAPPSPPRTVRSASRELPAGYPATRGKKRAVLVGVSYTGTDHELRGTVKDVECMRT 390
           H   G  P PP  +R +    P   PATR      L  ++  G+   + G    +     
Sbjct: 83  HNDFGGGPVPPDQMRWS----PLPLPATRTDFVDGLYTMAGNGSPEAMTGVAVHLYAANA 138

Query: 391 LLRDKFGFPGDSILVLTEE 447
            +RD+F +  D  L+L  +
Sbjct: 139 SMRDRFFYNADGELLLVPQ 157


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,185,239
Number of Sequences: 219361
Number of extensions: 1337930
Number of successful extensions: 5919
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 5534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5900
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result