ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart35f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
2dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
3dbj|AK105859.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
4dbj|AK068810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
5gb|AY108260.1| Zea mays PCO082493 mRNA sequence 159 1e-35
6dbj|AK070341.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 4e-32
7ref|XM_474441.1| Oryza sativa (japonica cultivar-group), predic... 50 0.007
8emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4,... 50 0.007
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
10dbj|AK107360.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
11emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 50 0.007
12ref|NM_183664.1| Oryza sativa (japonica cultivar-group), predic... 48 0.029
13gb|AY459337.1| Oryza sativa (japonica cultivar-group) clone CL00... 48 0.029
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.029
15dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.029
16dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.029
17dbj|AK106554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.029
18emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207... 44 0.45
19dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 44 0.45
20emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 1.8
21ref|NM_001031518.1| Gallus gallus somatostatin receptor 4 (SSTR4... 40 7.0
22emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 7.0
23gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 7.0
24gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 7.0
25gb|AC144734.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
26gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 7.0
27gb|AC087311.23| Homo sapiens 12 BAC RP11-267D19 (Roswell Park Ca... 40 7.0
28gb|AC092357.2| Homo sapiens chromosome 16 clone RP11-332P24, com... 40 7.0
29gb|DQ069274.1| Gallus gallus somatostatin receptor type 4 precur... 40 7.0
30dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
31gb|AC016761.10| Homo sapiens BAC clone RP11-538A12 from 2, compl... 40 7.0
32gb|AC009236.4| Homo sapiens BAC clone RP11-421J10 from 2, comple... 40 7.0
33gb|AC018558.6| Homo sapiens chromosome 16 clone RP11-80F22, comp... 40 7.0
34gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  168 bits (85), Expect = 1e-38
 Identities = 136/153 (88%)
 Strand = Plus / Minus

                                                                            
Query: 81       gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 140
                ||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 15401190 gcggcgatggtggcggcgcagtgcatctacgcggccatgacgctctgggccaaggccatg 15401131

                                                                            
Query: 141      ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 200
                ||| |||| ||| | |||||| || |||||||||||||| | |||||||||| |||||| 
Sbjct: 15401130 ttcggccgtggcgtcagccccgtgatcttcgtcgtctaccgccaggccatcggcaccctc 15401071

                                                 
Query: 201      gtcctcgtccccatcaccttgcttgccaacagg 233
                |||||||||||||||||| | || |||||||||
Sbjct: 15401070 gtcctcgtccccatcaccctcctcgccaacagg 15401038



 Score =  147 bits (74), Expect = 4e-32
 Identities = 119/134 (88%)
 Strand = Plus / Minus

                                                                            
Query: 81       gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 140
                ||||| ||||||| || ||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 15414070 gcggcgatggtggcggcgcagtgcatctacgcggcgctggcgctctgggccaaggccgtg 15414011

                                                                            
Query: 141      ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 200
                |||| | | ||||||||| |||||||||||||||||||| | ||||||||||||||| | 
Sbjct: 15414010 ttcaccgggggcatgagcaccatggtcttcgtcgtctaccgccaggccatcgccaccgtc 15413951

                              
Query: 201      gtcctcgtccccat 214
                 |||||||||||||
Sbjct: 15413950 ttcctcgtccccat 15413937



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                            
Query: 325      tgtactaccaaggcatgtacctgggatcatcgtccatggcgacggccatgacgaacctta 384
                |||||||||| ||| || | |||||||| ||||| ||||||||||||||||  ||||| |
Sbjct: 15413270 tgtactaccagggcctgcatctgggatcgtcgtcgatggcgacggccatgagcaacctga 15413211

                                                     
Query: 385      taccggcgatcaccttcgtgctggcgacgtcagtagg 421
                |||| ||||||||||||||| ||||  ||||||||||
Sbjct: 15413210 tacccgcgatcaccttcgtgatggcagcgtcagtagg 15413174



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                            
Query: 457      tggccaaggtattcggcaccgccgtctgcgtcggaggcgccatggtcatggccttcttca 516
                |||| ||| ||||||||||| |||||||||||||||| ||||||| |||||| |||||||
Sbjct: 15411332 tggcgaagatattcggcaccaccgtctgcgtcggaggagccatggccatggcgttcttca 15411273

                     
Query: 517      agggc 521
                |||||
Sbjct: 15411272 agggc 15411268



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 357      tccatggcgacggccatgac 376
                ||||||||||||||||||||
Sbjct: 15400576 tccatggcgacggccatgac 15400557



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>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1299_A11
          Length = 160099

 Score =  168 bits (85), Expect = 1e-38
 Identities = 136/153 (88%)
 Strand = Plus / Minus

                                                                         
Query: 81    gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 140
             ||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 50482 gcggcgatggtggcggcgcagtgcatctacgcggccatgacgctctgggccaaggccatg 50423

                                                                         
Query: 141   ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 200
             ||| |||| ||| | |||||| || |||||||||||||| | |||||||||| |||||| 
Sbjct: 50422 ttcggccgtggcgtcagccccgtgatcttcgtcgtctaccgccaggccatcggcaccctc 50363

                                              
Query: 201   gtcctcgtccccatcaccttgcttgccaacagg 233
             |||||||||||||||||| | || |||||||||
Sbjct: 50362 gtcctcgtccccatcaccctcctcgccaacagg 50330



 Score =  147 bits (74), Expect = 4e-32
 Identities = 119/134 (88%)
 Strand = Plus / Minus

                                                                         
Query: 81    gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 140
             ||||| ||||||| || ||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 63362 gcggcgatggtggcggcgcagtgcatctacgcggcgctggcgctctgggccaaggccgtg 63303

                                                                         
Query: 141   ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 200
             |||| | | ||||||||| |||||||||||||||||||| | ||||||||||||||| | 
Sbjct: 63302 ttcaccgggggcatgagcaccatggtcttcgtcgtctaccgccaggccatcgccaccgtc 63243

                           
Query: 201   gtcctcgtccccat 214
              |||||||||||||
Sbjct: 63242 ttcctcgtccccat 63229



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                         
Query: 325   tgtactaccaaggcatgtacctgggatcatcgtccatggcgacggccatgacgaacctta 384
             |||||||||| ||| || | |||||||| ||||| ||||||||||||||||  ||||| |
Sbjct: 62562 tgtactaccagggcctgcatctgggatcgtcgtcgatggcgacggccatgagcaacctga 62503

                                                  
Query: 385   taccggcgatcaccttcgtgctggcgacgtcagtagg 421
             |||| ||||||||||||||| ||||  ||||||||||
Sbjct: 62502 tacccgcgatcaccttcgtgatggcagcgtcagtagg 62466



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                         
Query: 457   tggccaaggtattcggcaccgccgtctgcgtcggaggcgccatggtcatggccttcttca 516
             |||| ||| ||||||||||| |||||||||||||||| ||||||| |||||| |||||||
Sbjct: 60624 tggcgaagatattcggcaccaccgtctgcgtcggaggagccatggccatggcgttcttca 60565

                  
Query: 517   agggc 521
             |||||
Sbjct: 60564 agggc 60560



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   tccatggcgacggccatgac 376
             ||||||||||||||||||||
Sbjct: 49868 tccatggcgacggccatgac 49849



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>dbj|AK105859.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H10, full
           insert sequence
          Length = 1716

 Score =  168 bits (85), Expect = 1e-38
 Identities = 136/153 (88%)
 Strand = Plus / Plus

                                                                       
Query: 81  gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 140
           ||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 172 gcggcgatggtggcggcgcagtgcatctacgcggccatgacgctctgggccaaggccatg 231

                                                                       
Query: 141 ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 200
           ||| |||| ||| | |||||| || |||||||||||||| | |||||||||| |||||| 
Sbjct: 232 ttcggccgtggcgtcagccccgtgatcttcgtcgtctaccgccaggccatcggcaccctc 291

                                            
Query: 201 gtcctcgtccccatcaccttgcttgccaacagg 233
           |||||||||||||||||| | || |||||||||
Sbjct: 292 gtcctcgtccccatcaccctcctcgccaacagg 324



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 tccatggcgacggccatgac 376
           ||||||||||||||||||||
Sbjct: 671 tccatggcgacggccatgac 690



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>dbj|AK068810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159I18, full
           insert sequence
          Length = 1205

 Score =  168 bits (85), Expect = 1e-38
 Identities = 136/153 (88%)
 Strand = Plus / Plus

                                                                       
Query: 81  gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 140
           ||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 173 gcggcgatggtggcggcgcagtgcatctacgcggccatgacgctctgggccaaggccatg 232

                                                                       
Query: 141 ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 200
           ||| |||| ||| | |||||| || |||||||||||||| | |||||||||| |||||| 
Sbjct: 233 ttcggccgtggcgtcagccccgtgatcttcgtcgtctaccgccaggccatcggcaccctc 292

                                            
Query: 201 gtcctcgtccccatcaccttgcttgccaacagg 233
           |||||||||||||||||| | || |||||||||
Sbjct: 293 gtcctcgtccccatcaccctcctcgccaacagg 325



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 tccatggcgacggccatgac 376
           ||||||||||||||||||||
Sbjct: 453 tccatggcgacggccatgac 472



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>gb|AY108260.1| Zea mays PCO082493 mRNA sequence
          Length = 838

 Score =  159 bits (80), Expect = 1e-35
 Identities = 212/256 (82%)
 Strand = Plus / Plus

                                                                       
Query: 266 gacgggcttcgcgctggtgttcttggcctctcttgtcggggcgacggcggatcagtacat 325
           |||||||||| ||||||| ||| | ||||| ||||||||||| |||| | | |||| |||
Sbjct: 287 gacgggcttctcgctggtcttcgtcgcctcccttgtcggggcaacggtgaaccagtgcat 346

                                                                       
Query: 326 gtactaccaaggcatgtacctgggatcatcgtccatggcgacggccatgacgaaccttat 385
           ||||||||||||  || | ||||| || ||||||||||| ||||||||||| ||| | ||
Sbjct: 347 gtactaccaaggggtgaatctgggctcgtcgtccatggcaacggccatgaccaacttgat 406

                                                                       
Query: 386 accggcgatcaccttcgtgctggcgacgtcagtaggtctagaaagcgtggagatcaggaa 445
            || || |||||||||||  ||||| | ||||| || ||||| || ||||||  ||||| 
Sbjct: 407 ccccgccatcaccttcgtcatggcggcatcagtcggcctagagagggtggaggccaggag 466

                                                                       
Query: 446 gccgcgaagcatggccaaggtattcggcaccgccgtctgcgtcggaggcgccatggtcat 505
           |||| | ||| |||||||| | |||||||| |||||||||||| | |||||||||| |||
Sbjct: 467 gccgaggagcctggccaagatcttcggcacggccgtctgcgtcagcggcgccatggccat 526

                           
Query: 506 ggccttcttcaagggc 521
           ||| ||||||||||||
Sbjct: 527 ggctttcttcaagggc 542



 Score =  119 bits (60), Expect = 1e-23
 Identities = 114/132 (86%)
 Strand = Plus / Plus

                                                                       
Query: 81  gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 140
           |||||||||||||||  ||||||||||||||| ||  | ||||||| | |||||||   |
Sbjct: 99  gcggccatggtggtgacgcagtgcatctacgccgctctagcgctcttgtccaaggcggcg 158

                                                                       
Query: 141 ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 200
           |||| | |||||||||||||| |||| ||||||||||||||||||||| |||||||| ||
Sbjct: 159 ttcaccggcggcatgagccccctggtgttcgtcgtctacaggcaggccgtcgccaccatt 218

                       
Query: 201 gtcctcgtcccc 212
           || |||||||||
Sbjct: 219 gtactcgtcccc 230



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>dbj|AK070341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050L03, full
            insert sequence
          Length = 3713

 Score =  147 bits (74), Expect = 4e-32
 Identities = 119/134 (88%)
 Strand = Plus / Plus

                                                                        
Query: 81   gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 140
            ||||| ||||||| || ||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 2401 gcggcgatggtggcggcgcagtgcatctacgcggcgctggcgctctgggccaaggccgtg 2460

                                                                        
Query: 141  ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 200
            |||| | | ||||||||| |||||||||||||||||||| | ||||||||||||||| | 
Sbjct: 2461 ttcaccgggggcatgagcgccatggtcttcgtcgtctaccgccaggccatcgccaccgtc 2520

                          
Query: 201  gtcctcgtccccat 214
             |||||||||||||
Sbjct: 2521 ttcctcgtccccat 2534



 Score =  145 bits (73), Expect = 2e-31
 Identities = 166/197 (84%)
 Strand = Plus / Plus

                                                                        
Query: 325  tgtactaccaaggcatgtacctgggatcatcgtccatggcgacggccatgacgaacctta 384
            |||||||||| ||| || | |||||||| ||||| ||||||||||||||||  ||||| |
Sbjct: 2642 tgtactaccagggcctgcatctgggatcgtcgtcgatggcgacggccatgagcaacctga 2701

                                                                        
Query: 385  taccggcgatcaccttcgtgctggcgacgtcagtaggtctagaaagcgtggagatcagga 444
            |||| ||||||||||||||| ||||  |||||||||| |||||||  |||||  ||||||
Sbjct: 2702 tacccgcgatcaccttcgtgatggcagcgtcagtaggactagaaaaggtggacctcagga 2761

                                                                        
Query: 445  agccgcgaagcatggccaaggtattcggcaccgccgtctgcgtcggaggcgccatggtca 504
                | | ||| |||| ||| ||||||||||| |||||||||||||||| ||||||| ||
Sbjct: 2762 gagtgaggagcttggcgaagatattcggcaccaccgtctgcgtcggaggagccatggcca 2821

                             
Query: 505  tggccttcttcaagggc 521
            |||| ||||||||||||
Sbjct: 2822 tggcgttcttcaagggc 2838



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>ref|XM_474441.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1239

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 61  tgcaggggcataagccgctggcggccatggtggtggtgcag 101
           |||||||||  |||||| ||||||| |||||||||||||||
Sbjct: 20  tgcaggggctgaagccggtggcggcgatggtggtggtgcag 60



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>emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070M12,
              complete sequence
          Length = 144670

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                       
Query: 61     tgcaggggcataagccgctggcggccatggtggtggtgcag 101
              |||||||||  |||||| ||||||| |||||||||||||||
Sbjct: 139501 tgcaggggctgaagccggtggcggcgatggtggtggtgcag 139541



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 61       tgcaggggcataagccgctggcggccatggtggtggtgcag 101
                |||||||||  |||||| ||||||| |||||||||||||||
Sbjct: 35202989 tgcaggggctgaagccggtggcggcgatggtggtggtgcag 35203029



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>dbj|AK107360.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-A04, full
           insert sequence
          Length = 1551

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 61  tgcaggggcataagccgctggcggccatggtggtggtgcag 101
           |||||||||  |||||| ||||||| |||||||||||||||
Sbjct: 27  tgcaggggctgaagccggtggcggcgatggtggtggtgcag 67



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>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete
             sequence
          Length = 82895

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 61    tgcaggggcataagccgctggcggccatggtggtggtgcag 101
             |||||||||  |||||| ||||||| |||||||||||||||
Sbjct: 47004 tgcaggggctgaagccggtggcggcgatggtggtggtgcag 47044



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>ref|NM_183664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1143

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 458 ggccaaggtattcggcaccgccgtctgcgtcggaggcgccatggtcatggccttcttcaa 517
           ||||||||| |||||||| |  ||||||||||| ||| ||||| ||||| | |||| |||
Sbjct: 399 ggccaaggtgttcggcacggtggtctgcgtcggcggctccatgatcatgccgttctacaa 458

               
Query: 518 gggc 521
           ||||
Sbjct: 459 gggc 462



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>gb|AY459337.1| Oryza sativa (japonica cultivar-group) clone CL003615.3 R2R3-MYB gene
             region
          Length = 42296

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                         
Query: 458   ggccaaggtattcggcaccgccgtctgcgtcggaggcgccatggtcatggccttcttcaa 517
             ||||||||| |||||||| |  ||||||||||| ||| ||||| ||||| | |||| |||
Sbjct: 30706 ggccaaggtgttcggcacggtggtctgcgtcggcggctccatgatcatgccgttctacaa 30647

                 
Query: 518   gggc 521
             ||||
Sbjct: 30646 gggc 30643



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                            
Query: 458      ggccaaggtattcggcaccgccgtctgcgtcggaggcgccatggtcatggccttcttcaa 517
                ||||||||| |||||||| |  ||||||||||| ||| ||||| ||||| | |||| |||
Sbjct: 10911642 ggccaaggtgttcggcacggtggtctgcgtcggcggctccatgatcatgccgttctacaa 10911701

                    
Query: 518      gggc 521
                ||||
Sbjct: 10911702 gggc 10911705



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>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0025P13
          Length = 133242

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                         
Query: 458   ggccaaggtattcggcaccgccgtctgcgtcggaggcgccatggtcatggccttcttcaa 517
             ||||||||| |||||||| |  ||||||||||| ||| ||||| ||||| | |||| |||
Sbjct: 98658 ggccaaggtgttcggcacggtggtctgcgtcggcggctccatgatcatgccgttctacaa 98717

                 
Query: 518   gggc 521
             ||||
Sbjct: 98718 gggc 98721



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>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0487H02
          Length = 145491

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                         
Query: 458   ggccaaggtattcggcaccgccgtctgcgtcggaggcgccatggtcatggccttcttcaa 517
             ||||||||| |||||||| |  ||||||||||| ||| ||||| ||||| | |||| |||
Sbjct: 14484 ggccaaggtgttcggcacggtggtctgcgtcggcggctccatgatcatgccgttctacaa 14543

                 
Query: 518   gggc 521
             ||||
Sbjct: 14544 gggc 14547



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>dbj|AK106554.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-G11, full
           insert sequence
          Length = 1567

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 458 ggccaaggtattcggcaccgccgtctgcgtcggaggcgccatggtcatggccttcttcaa 517
           ||||||||| |||||||| |  ||||||||||| ||| ||||| ||||| | |||| |||
Sbjct: 586 ggccaaggtgttcggcacggtggtctgcgtcggcggctccatgatcatgccgttctacaa 645

               
Query: 518 gggc 521
           ||||
Sbjct: 646 gggc 649



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>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 72     aagccgctggcggccatggtggtggtgcag 101
              |||||| ||||||| |||||||||||||||
Sbjct: 110031 aagccggtggcggcgatggtggtggtgcag 110002



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 354    tcgtccatggcgacggccatgacgaa 379
              ||||||||||||||||| ||||||||
Sbjct: 480120 tcgtccatggcgacggctatgacgaa 480145



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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 468     ttcggcaccgccgtctgcgtcggag 492
               |||||||||||||||||| ||||||
Sbjct: 2366669 ttcggcaccgccgtctgcttcggag 2366693



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>ref|NM_001031518.1| Gallus gallus somatostatin receptor 4 (SSTR4), mRNA
          Length = 1228

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 77  gctggcggccatggtggtggtgcagtgcatctacgc 112
           |||||| | |||||||||| | ||||||||||||||
Sbjct: 148 gctggcaggcatggtggtgatccagtgcatctacgc 183



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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 81      gcggccatggtggtggtgca 100
               ||||||||||||||||||||
Sbjct: 4713922 gcggccatggtggtggtgca 4713903



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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 204     ctcgtccccatcaccttgcttgcc 227
               |||||||||| |||||||||||||
Sbjct: 1946764 ctcgtccccaccaccttgcttgcc 1946741



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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 116    catggcgctctgggccaaggccat 139
              |||| |||||||||||||||||||
Sbjct: 140444 catgtcgctctgggccaaggccat 140467



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>gb|AC144734.1| Oryza sativa (japonica cultivar-group) chromosome 11 plasmid clone
           OSJNBa0026O24_C01, complete sequence
          Length = 2105

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 123 ctctgggccaaggccatgttcagc 146
           ||||||||||||| ||||||||||
Sbjct: 804 ctctgggccaaggacatgttcagc 781



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 106     tctacgcggccatggcgctc 125
               ||||||||||||||||||||
Sbjct: 2508469 tctacgcggccatggcgctc 2508450



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 82      cggccatggtggtggtgcag 101
               ||||||||||||||||||||
Sbjct: 1664299 cggccatggtggtggtgcag 1664318



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>gb|AC087311.23| Homo sapiens 12 BAC RP11-267D19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 159688

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    ctcccgggcgttgccatggc 58
             ||||||||||||||||||||
Sbjct: 91439 ctcccgggcgttgccatggc 91458



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>gb|AC092357.2| Homo sapiens chromosome 16 clone RP11-332P24, complete sequence
          Length = 191768

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 78    ctggcggccatggtggtggtgcag 101
             ||||||||| ||||||||||||||
Sbjct: 68035 ctggcggccctggtggtggtgcag 68058



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>gb|DQ069274.1| Gallus gallus somatostatin receptor type 4 precursor (SS4R) mRNA,
           complete cds
          Length = 1228

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 77  gctggcggccatggtggtggtgcagtgcatctacgc 112
           |||||| | |||||||||| | ||||||||||||||
Sbjct: 148 gctggcaggcatggtggtgatccagtgcatctacgc 183



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 123      ctctgggccaaggccatgttcagc 146
                ||||||||||||| ||||||||||
Sbjct: 26946024 ctctgggccaaggacatgttcagc 26946001



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>gb|AC016761.10| Homo sapiens BAC clone RP11-538A12 from 2, complete sequence
          Length = 159338

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   aacaggaaaaggctgaggga 247
             ||||||||||||||||||||
Sbjct: 85290 aacaggaaaaggctgaggga 85271



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>gb|AC009236.4| Homo sapiens BAC clone RP11-421J10 from 2, complete sequence
          Length = 178911

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  gtcctcgtccccatcacctt 220
            ||||||||||||||||||||
Sbjct: 5695 gtcctcgtccccatcacctt 5676



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>gb|AC018558.6| Homo sapiens chromosome 16 clone RP11-80F22, complete sequence
          Length = 151051

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 78     ctggcggccatggtggtggtgcag 101
              ||||||||| ||||||||||||||
Sbjct: 118292 ctggcggccctggtggtggtgcag 118315



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 123      ctctgggccaaggccatgttcagc 146
                ||||||||||||| ||||||||||
Sbjct: 27273077 ctctgggccaaggacatgttcagc 27273054


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,726,553
Number of Sequences: 3902068
Number of extensions: 3726553
Number of successful extensions: 68920
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68327
Number of HSP's gapped (non-prelim): 593
length of query: 521
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 498
effective length of database: 17,143,297,704
effective search space: 8537362256592
effective search space used: 8537362256592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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