ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart35f06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468759.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1279 Score = 337 bits (170), Expect = 2e-89 Identities = 362/426 (84%) Strand = Plus / Plus Query: 137 gaagaagaaggtcatcatcgacaccgacccagggatcgacgacgccatggccatcttcgc 196 |||||||||| || |||||||||||||||| || ||||| ||||||||||||||||||| Sbjct: 80 gaagaagaagctcgtcatcgacaccgacccgggaatcgatgacgccatggccatcttcgt 139 Query: 197 ggcgctgaggtcgccggagctggaggtggttggcctcaccaccatcttcggcaacgtcta 256 ||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||| Sbjct: 140 ggcgctgaggtcgccggaggtggagctgctgggcctcaccaccatcttcggcaacgtcta 199 Query: 257 caccgccctcgccacccgcaacgcgctgcacctcctggagaccgctgggaggaccgacat 316 |||| ||||||||||||||||||| || ||||| |||||| | | ||||||||| ||||| Sbjct: 200 caccaccctcgccacccgcaacgccctccacctgctggaggctgttgggaggactgacat 259 Query: 317 ccccgtcgcggaggggtcccatgtaacaatcaagaaagccaccaagctacggattgccag 376 |||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 260 ccccgtggcagagggatcccatgtaacaatcaagaaagccaccaagctacggattgcgag 319 Query: 377 cttcgtccacggttcggatggcctcggcaaccagaacttccctccgccggccggcaaggc 436 ||| || || || |||||||| || || || |||||||| |||||||| | || ||| | Sbjct: 320 ctttgttcatggctcggatggtctaggaaatcagaactttcctccgccaactgggaagcc 379 Query: 437 ggtggaccagtccgccgccgccttccttgtcgagcaggcgaacctctaccccggacaagt 496 | || || || |||||||| || |||||||||||||| || || ||||| |||||||| Sbjct: 380 cttagatcaatcggccgccgcgtttcttgtcgagcaggcaaatctgtaccctggacaagt 439 Query: 497 aaccgtcgtcgccctcggccccctcaccaaccttgcgctggccgtcgagcttgacccttc 556 || || || ||||| || || || |||||||| || |||| | || ||||| ||||| Sbjct: 440 tactgtggttgcccttggtccacttaccaacctagctttggctatagaacttgatccttc 499 Query: 557 tttccc 562 |||||| Sbjct: 500 tttccc 505
>dbj|AK061895.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G08, full insert sequence Length = 1321 Score = 337 bits (170), Expect = 2e-89 Identities = 362/426 (84%) Strand = Plus / Plus Query: 137 gaagaagaaggtcatcatcgacaccgacccagggatcgacgacgccatggccatcttcgc 196 |||||||||| || |||||||||||||||| || ||||| ||||||||||||||||||| Sbjct: 122 gaagaagaagctcgtcatcgacaccgacccgggaatcgatgacgccatggccatcttcgt 181 Query: 197 ggcgctgaggtcgccggagctggaggtggttggcctcaccaccatcttcggcaacgtcta 256 ||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||| Sbjct: 182 ggcgctgaggtcgccggaggtggagctgctgggcctcaccaccatcttcggcaacgtcta 241 Query: 257 caccgccctcgccacccgcaacgcgctgcacctcctggagaccgctgggaggaccgacat 316 |||| ||||||||||||||||||| || ||||| |||||| | | ||||||||| ||||| Sbjct: 242 caccaccctcgccacccgcaacgccctccacctgctggaggctgttgggaggactgacat 301 Query: 317 ccccgtcgcggaggggtcccatgtaacaatcaagaaagccaccaagctacggattgccag 376 |||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 302 ccccgtggcagagggatcccatgtaacaatcaagaaagccaccaagctacggattgcgag 361 Query: 377 cttcgtccacggttcggatggcctcggcaaccagaacttccctccgccggccggcaaggc 436 ||| || || || |||||||| || || || |||||||| |||||||| | || ||| | Sbjct: 362 ctttgttcatggctcggatggtctaggaaatcagaactttcctccgccaactgggaagcc 421 Query: 437 ggtggaccagtccgccgccgccttccttgtcgagcaggcgaacctctaccccggacaagt 496 | || || || |||||||| || |||||||||||||| || || ||||| |||||||| Sbjct: 422 cttagatcaatcggccgccgcgtttcttgtcgagcaggcaaatctgtaccctggacaagt 481 Query: 497 aaccgtcgtcgccctcggccccctcaccaaccttgcgctggccgtcgagcttgacccttc 556 || || || ||||| || || || |||||||| || |||| | || ||||| ||||| Sbjct: 482 tactgtggttgcccttggtccacttaccaacctagctttggctatagaacttgatccttc 541 Query: 557 tttccc 562 |||||| Sbjct: 542 tttccc 547
>dbj|AK101293.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033G23, full insert sequence Length = 1359 Score = 337 bits (170), Expect = 2e-89 Identities = 362/426 (84%) Strand = Plus / Plus Query: 137 gaagaagaaggtcatcatcgacaccgacccagggatcgacgacgccatggccatcttcgc 196 |||||||||| || |||||||||||||||| || ||||| ||||||||||||||||||| Sbjct: 162 gaagaagaagctcgtcatcgacaccgacccgggaatcgatgacgccatggccatcttcgt 221 Query: 197 ggcgctgaggtcgccggagctggaggtggttggcctcaccaccatcttcggcaacgtcta 256 ||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||| Sbjct: 222 ggcgctgaggtcgccggaggtggagctgctgggcctcaccaccatcttcggcaacgtcta 281 Query: 257 caccgccctcgccacccgcaacgcgctgcacctcctggagaccgctgggaggaccgacat 316 |||| ||||||||||||||||||| || ||||| |||||| | | ||||||||| ||||| Sbjct: 282 caccaccctcgccacccgcaacgccctccacctgctggaggctgttgggaggactgacat 341 Query: 317 ccccgtcgcggaggggtcccatgtaacaatcaagaaagccaccaagctacggattgccag 376 |||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 342 ccccgtggcagagggatcccatgtaacaatcaagaaagccaccaagctacggattgcgag 401 Query: 377 cttcgtccacggttcggatggcctcggcaaccagaacttccctccgccggccggcaaggc 436 ||| || || || |||||||| || || || |||||||| |||||||| | || ||| | Sbjct: 402 ctttgttcatggctcggatggtctaggaaatcagaactttcctccgccaactgggaagcc 461 Query: 437 ggtggaccagtccgccgccgccttccttgtcgagcaggcgaacctctaccccggacaagt 496 | || || || |||||||| || |||||||||||||| || || ||||| |||||||| Sbjct: 462 cttagatcaatcggccgccgcgtttcttgtcgagcaggcaaatctgtaccctggacaagt 521 Query: 497 aaccgtcgtcgccctcggccccctcaccaaccttgcgctggccgtcgagcttgacccttc 556 || || || ||||| || || || |||||||| || |||| | || ||||| ||||| Sbjct: 522 tactgtggttgcccttggtccacttaccaacctagctttggctatagaacttgatccttc 581 Query: 557 tttccc 562 |||||| Sbjct: 582 tttccc 587
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19 map E30331S, complete sequence Length = 164820 Score = 161 bits (81), Expect = 3e-36 Identities = 105/113 (92%) Strand = Plus / Plus Query: 177 gacgccatggccatcttcgcggcgctgaggtcgccggagctggaggtggttggcctcacc 236 ||||||||||||||||||| ||||||||||||||||||| ||||| || | ||||||||| Sbjct: 3288 gacgccatggccatcttcgtggcgctgaggtcgccggaggtggagctgctgggcctcacc 3347 Query: 237 accatcttcggcaacgtctacaccgccctcgccacccgcaacgcgctgcacct 289 |||||||||||||||||||||||| ||||||||||||||||||| || ||||| Sbjct: 3348 accatcttcggcaacgtctacaccaccctcgccacccgcaacgccctccacct 3400 Score = 83.8 bits (42), Expect = 6e-13 Identities = 147/182 (80%) Strand = Plus / Plus Query: 348 aagaaagccaccaagctacggattgccagcttcgtccacggttcggatggcctcggcaac 407 |||||||||||||||||||||||||| ||||| || || || |||||||| || || || Sbjct: 3889 aagaaagccaccaagctacggattgcgagctttgttcatggctcggatggtctaggaaat 3948 Query: 408 cagaacttccctccgccggccggcaaggcggtggaccagtccgccgccgccttccttgtc 467 |||||||| |||||||| | || ||| | | || || || |||||||| || |||||| Sbjct: 3949 cagaactttcctccgccaactgggaagcccttagatcaatcggccgccgcgtttcttgtc 4008 Query: 468 gagcaggcgaacctctaccccggacaagtaaccgtcgtcgccctcggccccctcaccaac 527 |||||||| || || ||||| |||||||| || || || ||||| || || || |||||| Sbjct: 4009 gagcaggcaaatctgtaccctggacaagttactgtggttgcccttggtccacttaccaac 4068 Query: 528 ct 529 || Sbjct: 4069 ct 4070 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 302 tgggaggaccgacatccccgtcgcggaggggtcccatgtaacaatcaag 350 ||||||||| ||||||||||| || ||||| |||||||||||||||||| Sbjct: 3557 tgggaggactgacatccccgtggcagagggatcccatgtaacaatcaag 3605 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 137 gaagaagaaggtcatcatcgacaccgaccc 166 |||||||||| || |||||||||||||||| Sbjct: 3153 gaagaagaagctcgtcatcgacaccgaccc 3182
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 161 bits (81), Expect = 3e-36 Identities = 105/113 (92%) Strand = Plus / Minus Query: 177 gacgccatggccatcttcgcggcgctgaggtcgccggagctggaggtggttggcctcacc 236 ||||||||||||||||||| ||||||||||||||||||| ||||| || | ||||||||| Sbjct: 17560455 gacgccatggccatcttcgtggcgctgaggtcgccggaggtggagctgctgggcctcacc 17560396 Query: 237 accatcttcggcaacgtctacaccgccctcgccacccgcaacgcgctgcacct 289 |||||||||||||||||||||||| ||||||||||||||||||| || ||||| Sbjct: 17560395 accatcttcggcaacgtctacaccaccctcgccacccgcaacgccctccacct 17560343 Score = 83.8 bits (42), Expect = 6e-13 Identities = 147/182 (80%) Strand = Plus / Minus Query: 348 aagaaagccaccaagctacggattgccagcttcgtccacggttcggatggcctcggcaac 407 |||||||||||||||||||||||||| ||||| || || || |||||||| || || || Sbjct: 17559854 aagaaagccaccaagctacggattgcgagctttgttcatggctcggatggtctaggaaat 17559795 Query: 408 cagaacttccctccgccggccggcaaggcggtggaccagtccgccgccgccttccttgtc 467 |||||||| |||||||| | || ||| | | || || || |||||||| || |||||| Sbjct: 17559794 cagaactttcctccgccaactgggaagcccttagatcaatcggccgccgcgtttcttgtc 17559735 Query: 468 gagcaggcgaacctctaccccggacaagtaaccgtcgtcgccctcggccccctcaccaac 527 |||||||| || || ||||| |||||||| || || || ||||| || || || |||||| Sbjct: 17559734 gagcaggcaaatctgtaccctggacaagttactgtggttgcccttggtccacttaccaac 17559675 Query: 528 ct 529 || Sbjct: 17559674 ct 17559673 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 302 tgggaggaccgacatccccgtcgcggaggggtcccatgtaacaatcaag 350 ||||||||| ||||||||||| || ||||| |||||||||||||||||| Sbjct: 17560186 tgggaggactgacatccccgtggcagagggatcccatgtaacaatcaag 17560138 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Minus Query: 137 gaagaagaaggtcatcatcgacaccgaccc 166 |||||||||| || |||||||||||||||| Sbjct: 17560590 gaagaagaagctcgtcatcgacaccgaccc 17560561 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cctcaccaccatcttcggca 249 |||||||||||||||||||| Sbjct: 8979261 cctcaccaccatcttcggca 8979242
>gb|AC137999.2| Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence Length = 97152 Score = 161 bits (81), Expect = 3e-36 Identities = 105/113 (92%) Strand = Plus / Plus Query: 177 gacgccatggccatcttcgcggcgctgaggtcgccggagctggaggtggttggcctcacc 236 ||||||||||||||||||| ||||||||||||||||||| ||||| || | ||||||||| Sbjct: 94622 gacgccatggccatcttcgtggcgctgaggtcgccggaggtggagctgctgggcctcacc 94681 Query: 237 accatcttcggcaacgtctacaccgccctcgccacccgcaacgcgctgcacct 289 |||||||||||||||||||||||| ||||||||||||||||||| || ||||| Sbjct: 94682 accatcttcggcaacgtctacaccaccctcgccacccgcaacgccctccacct 94734 Score = 83.8 bits (42), Expect = 6e-13 Identities = 147/182 (80%) Strand = Plus / Plus Query: 348 aagaaagccaccaagctacggattgccagcttcgtccacggttcggatggcctcggcaac 407 |||||||||||||||||||||||||| ||||| || || || |||||||| || || || Sbjct: 95223 aagaaagccaccaagctacggattgcgagctttgttcatggctcggatggtctaggaaat 95282 Query: 408 cagaacttccctccgccggccggcaaggcggtggaccagtccgccgccgccttccttgtc 467 |||||||| |||||||| | || ||| | | || || || |||||||| || |||||| Sbjct: 95283 cagaactttcctccgccaactgggaagcccttagatcaatcggccgccgcgtttcttgtc 95342 Query: 468 gagcaggcgaacctctaccccggacaagtaaccgtcgtcgccctcggccccctcaccaac 527 |||||||| || || ||||| |||||||| || || || ||||| || || || |||||| Sbjct: 95343 gagcaggcaaatctgtaccctggacaagttactgtggttgcccttggtccacttaccaac 95402 Query: 528 ct 529 || Sbjct: 95403 ct 95404 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 302 tgggaggaccgacatccccgtcgcggaggggtcccatgtaacaatcaag 350 ||||||||| ||||||||||| || ||||| |||||||||||||||||| Sbjct: 94891 tgggaggactgacatccccgtggcagagggatcccatgtaacaatcaag 94939 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 137 gaagaagaaggtcatcatcgacaccgaccc 166 |||||||||| || |||||||||||||||| Sbjct: 94487 gaagaagaagctcgtcatcgacaccgaccc 94516
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 161 bits (81), Expect = 3e-36 Identities = 105/113 (92%) Strand = Plus / Minus Query: 177 gacgccatggccatcttcgcggcgctgaggtcgccggagctggaggtggttggcctcacc 236 ||||||||||||||||||| ||||||||||||||||||| ||||| || | ||||||||| Sbjct: 17553996 gacgccatggccatcttcgtggcgctgaggtcgccggaggtggagctgctgggcctcacc 17553937 Query: 237 accatcttcggcaacgtctacaccgccctcgccacccgcaacgcgctgcacct 289 |||||||||||||||||||||||| ||||||||||||||||||| || ||||| Sbjct: 17553936 accatcttcggcaacgtctacaccaccctcgccacccgcaacgccctccacct 17553884 Score = 83.8 bits (42), Expect = 6e-13 Identities = 147/182 (80%) Strand = Plus / Minus Query: 348 aagaaagccaccaagctacggattgccagcttcgtccacggttcggatggcctcggcaac 407 |||||||||||||||||||||||||| ||||| || || || |||||||| || || || Sbjct: 17553395 aagaaagccaccaagctacggattgcgagctttgttcatggctcggatggtctaggaaat 17553336 Query: 408 cagaacttccctccgccggccggcaaggcggtggaccagtccgccgccgccttccttgtc 467 |||||||| |||||||| | || ||| | | || || || |||||||| || |||||| Sbjct: 17553335 cagaactttcctccgccaactgggaagcccttagatcaatcggccgccgcgtttcttgtc 17553276 Query: 468 gagcaggcgaacctctaccccggacaagtaaccgtcgtcgccctcggccccctcaccaac 527 |||||||| || || ||||| |||||||| || || || ||||| || || || |||||| Sbjct: 17553275 gagcaggcaaatctgtaccctggacaagttactgtggttgcccttggtccacttaccaac 17553216 Query: 528 ct 529 || Sbjct: 17553215 ct 17553214 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 302 tgggaggaccgacatccccgtcgcggaggggtcccatgtaacaatcaag 350 ||||||||| ||||||||||| || ||||| |||||||||||||||||| Sbjct: 17553727 tgggaggactgacatccccgtggcagagggatcccatgtaacaatcaag 17553679 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Minus Query: 137 gaagaagaaggtcatcatcgacaccgaccc 166 |||||||||| || |||||||||||||||| Sbjct: 17554131 gaagaagaagctcgtcatcgacaccgaccc 17554102 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cctcaccaccatcttcggca 249 |||||||||||||||||||| Sbjct: 8977096 cctcaccaccatcttcggca 8977077
>dbj|AK061415.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D09, full insert sequence Length = 1329 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 142 agaaggtcatcatcgacaccgacccagggatcga 175 ||||||||||||||||||| || ||||||||||| Sbjct: 150 agaaggtcatcatcgacacggatccagggatcga 183 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 ctcaccaccatcttcggcaac 251 ||||||||||||||||||||| Sbjct: 239 ctcaccaccatcttcggcaac 259
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 142 agaaggtcatcatcgacaccgacccagggatcg 174 ||||||||||||||||||| || |||||||||| Sbjct: 22378720 agaaggtcatcatcgacacggatccagggatcg 22378688 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 ctcaccaccatcttcggcaac 251 ||||||||||||||||||||| Sbjct: 22378535 ctcaccaccatcttcggcaac 22378515
>dbj|AP005546.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1003_C09 Length = 124746 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 142 agaaggtcatcatcgacaccgacccagggatcg 174 ||||||||||||||||||| || |||||||||| Sbjct: 15209 agaaggtcatcatcgacacggatccagggatcg 15177 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 ctcaccaccatcttcggcaac 251 ||||||||||||||||||||| Sbjct: 15024 ctcaccaccatcttcggcaac 15004
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 259 ccgccctcgccacccgcaacgcgctg 284 |||||||||||| ||||||||||||| Sbjct: 409793 ccgccctcgccagccgcaacgcgctg 409768
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 260 cgccctcgccacccgcaacgcgctg 284 ||||| ||||||||||||||||||| Sbjct: 3328106 cgcccgcgccacccgcaacgcgctg 3328130
>gb|AC004994.1| Homo sapiens PAC clone RP5-1194E15 from 7, complete sequence Length = 80331 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 333 tcccatgtaacaatcaagaaa 353 ||||||||||||||||||||| Sbjct: 62195 tcccatgtaacaatcaagaaa 62175
>gb|AC142310.1| Pan troglodytes BAC clone RP43-45P13 from 7, complete sequence Length = 197471 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 333 tcccatgtaacaatcaagaaa 353 ||||||||||||||||||||| Sbjct: 102013 tcccatgtaacaatcaagaaa 101993
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 456 gccttccttgtcgagcaggcg 476 ||||||||||||||||||||| Sbjct: 100559 gccttccttgtcgagcaggcg 100539
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 456 gccttccttgtcgagcaggcg 476 ||||||||||||||||||||| Sbjct: 278786 gccttccttgtcgagcaggcg 278766
>gb|AE005929.1| Caulobacter crescentus CB15 section 255 of 359 of the complete genome Length = 13698 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 148 tcatcatcgacaccgacccagggatcgacgacgccatggcc 188 ||||| |||||||||| || || ||||||||||| |||||| Sbjct: 3395 tcatcttcgacaccgatcccggcatcgacgacgcgatggcc 3435
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 tgaggtcgccggagctggagg 222 ||||||||||||||||||||| Sbjct: 16248612 tgaggtcgccggagctggagg 16248592 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cctcaccaccatcttcggca 249 |||||||||||||||||||| Sbjct: 28853937 cctcaccaccatcttcggca 28853918
>dbj|AP004821.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0676G08 Length = 153154 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 tgaggtcgccggagctggagg 222 ||||||||||||||||||||| Sbjct: 125019 tgaggtcgccggagctggagg 124999
>dbj|AP006237.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0008D07 Length = 156874 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 tgaggtcgccggagctggagg 222 ||||||||||||||||||||| Sbjct: 10689 tgaggtcgccggagctggagg 10669
>ref|XM_310575.2| Anopheles gambiae str. PEST ENSANGP00000007405 (ENSANGG00000005590), partial mRNA Length = 1329 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 gaggtggttggcctcaccacc 239 ||||||||||||||||||||| Sbjct: 256 gaggtggttggcctcaccacc 276
>ref|XM_474445.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1047 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 caccgccctcgccacccgcaacgc 280 ||||||||||||||||||| |||| Sbjct: 426 caccgccctcgccacccgcgacgc 449
>ref|NM_187495.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2442 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cctcaccaccatcttcggca 249 |||||||||||||||||||| Sbjct: 2319 cctcaccaccatcttcggca 2338
>ref|XM_462671.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2331 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cctcaccaccatcttcggca 249 |||||||||||||||||||| Sbjct: 2208 cctcaccaccatcttcggca 2227
>ref|XM_473726.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2331 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cctcaccaccatcttcggca 249 |||||||||||||||||||| Sbjct: 2208 cctcaccaccatcttcggca 2227
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 462 cttgtcgagcaggcgaacctctac 485 |||||||||||||||||| ||||| Sbjct: 1426115 cttgtcgagcaggcgaacgtctac 1426138
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 cctcggccccctcaccaacc 528 |||||||||||||||||||| Sbjct: 2610136 cctcggccccctcaccaacc 2610117
>gb|AC149221.2| Mus musculus BAC clone RP23-402P22 from chromosome 7, complete sequence Length = 202580 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ggagctggaggtggttggcc 231 |||||||||||||||||||| Sbjct: 26940 ggagctggaggtggttggcc 26921
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 tggccatcttcgcggcgctg 203 |||||||||||||||||||| Sbjct: 660147 tggccatcttcgcggcgctg 660128
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 462 cttgtcgagcaggcgaacctctac 485 |||||||||||||||||| ||||| Sbjct: 2652227 cttgtcgagcaggcgaacgtctac 2652250
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 gccgccttccttgtcgagcaggcg 476 ||||||||||||||| |||||||| Sbjct: 3307645 gccgccttccttgtccagcaggcg 3307668
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 ccgtcgtcgccctcggcccc 518 |||||||||||||||||||| Sbjct: 1408971 ccgtcgtcgccctcggcccc 1408952
>gb|AC134603.4| Mus musculus BAC clone RP23-246L24 from chromosome 7, complete sequence Length = 229312 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ggagctggaggtggttggcc 231 |||||||||||||||||||| Sbjct: 190655 ggagctggaggtggttggcc 190636
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 gccttccttgtcgagcaggc 475 |||||||||||||||||||| Sbjct: 967851 gccttccttgtcgagcaggc 967870
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 ttcttctccacctcgctcga 69 |||||||||||||||||||| Sbjct: 3279267 ttcttctccacctcgctcga 3279286
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 cttgtcgagcaggcgaacctctac 485 |||||||||||||||||| ||||| Sbjct: 1731243 cttgtcgagcaggcgaacgtctac 1731220
>emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01, complete sequence Length = 143157 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cctcaccaccatcttcggca 249 |||||||||||||||||||| Sbjct: 83503 cctcaccaccatcttcggca 83484
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 caccgccctcgccacccgcaacgc 280 ||||||||||||||||||| |||| Sbjct: 85189 caccgccctcgccacccgcgacgc 85212
>emb|CR861335.1| Pongo pygmaeus mRNA; cDNA DKFZp459K2011 (from clone DKFZp459K2011) Length = 2344 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 ccacctcgctcgatccgcccgcgc 80 |||||||||||||||||| ||||| Sbjct: 221 ccacctcgctcgatccgcgcgcgc 198
>gb|BC076161.1| Danio rerio zgc:109930, mRNA (cDNA clone MGC:92677 IMAGE:7073820), complete cds Length = 958 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 gccatcttcgcggcgctgag 205 |||||||||||||||||||| Sbjct: 51 gccatcttcgcggcgctgag 32
>gb|AY044131.1| Drosophila hypocausta alcohol dehydrogenase (Adh) gene, exons 2 and 3 and partial cds Length = 723 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ctcaccaccatcttcggcaa 250 |||||||||||||||||||| Sbjct: 130 ctcaccaccatcttcggcaa 149
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 aaccgtcgtcgccctcggcc 516 |||||||||||||||||||| Sbjct: 1470789 aaccgtcgtcgccctcggcc 1470808
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 cggccggcaaggcggtggac 443 |||||||||||||||||||| Sbjct: 4038349 cggccggcaaggcggtggac 4038330
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 catggccgccgtcaccaaga 138 |||||||||||||||||||| Sbjct: 386711 catggccgccgtcaccaaga 386730
>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0071M09, complete sequence Length = 143595 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cctcaccaccatcttcggca 249 |||||||||||||||||||| Sbjct: 104122 cctcaccaccatcttcggca 104103
>ref|NM_001024436.1| Danio rerio zgc:109930 (zgc:109930), mRNA Length = 1065 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 gccatcttcgcggcgctgag 205 |||||||||||||||||||| Sbjct: 164 gccatcttcgcggcgctgag 145
>gb|BC095058.1| Danio rerio zgc:109930, mRNA (cDNA clone MGC:109930 IMAGE:7245400), complete cds Length = 1065 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 gccatcttcgcggcgctgag 205 |||||||||||||||||||| Sbjct: 164 gccatcttcgcggcgctgag 145
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 caccgccctcgccacccgcaacgc 280 ||||||||||||||||||| |||| Sbjct: 35228283 caccgccctcgccacccgcgacgc 35228260 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cctcaccaccatcttcggca 249 |||||||||||||||||||| Sbjct: 30104524 cctcaccaccatcttcggca 30104505 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cctcaccaccatcttcggca 249 |||||||||||||||||||| Sbjct: 30043821 cctcaccaccatcttcggca 30043802
>gb|AE004908.1| Pseudomonas aeruginosa PAO1, section 469 of 529 of the complete genome Length = 12551 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 534 ctggccgtcgagcttgaccc 553 |||||||||||||||||||| Sbjct: 11083 ctggccgtcgagcttgaccc 11064
>gb|AE004802.1| Pseudomonas aeruginosa PAO1, section 363 of 529 of the complete genome Length = 10623 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tcgatccgcccgcgcaaccg 85 |||||||||||||||||||| Sbjct: 5301 tcgatccgcccgcgcaaccg 5282
>gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, complete sequence Length = 163597 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 285 cacctcctggagaccgctgggagg 308 |||||||||||||| ||||||||| Sbjct: 129539 cacctcctggagacagctgggagg 129562
>gb|AC068874.21| Homo sapiens chromosome 17, clone RP11-399J11, complete sequence Length = 174914 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 cacctcctggagaccgctgggagg 308 |||||||||||||| ||||||||| Sbjct: 174139 cacctcctggagacagctgggagg 174116
>dbj|AP003373.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1116_H09 Length = 110086 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cctcaccaccatcttcggca 249 |||||||||||||||||||| Sbjct: 71980 cctcaccaccatcttcggca 71961
>gb|AF231346.1|AF231346 Ziphius cavirostris von Willebrand factor gene, partial cds Length = 1237 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aagaagaagaaggtcatcat 154 |||||||||||||||||||| Sbjct: 503 aagaagaagaaggtcatcat 522
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 56 tccacctcgctcgatccgcccgcgcaac 83 |||||||||| || |||||||||||||| Sbjct: 1077803 tccacctcgcacgctccgcccgcgcaac 1077830
>dbj|AK103558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132H20, full insert sequence Length = 1413 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 caccgccctcgccacccgcaacgc 280 ||||||||||||||||||| |||| Sbjct: 529 caccgccctcgccacccgcgacgc 552
>dbj|AK101245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032B08, full insert sequence Length = 3800 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 caccgccctcgccacccgcaacgc 280 ||||||||||||||||||| |||| Sbjct: 3017 caccgccctcgccacccgcgacgc 3040
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 gatcgacgacgccatggcca 189 |||||||||||||||||||| Sbjct: 792032 gatcgacgacgccatggcca 792013
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 gccgccttccttgtcgagcaggcg 476 |||| ||||||||||||||||||| Sbjct: 3353344 gccggcttccttgtcgagcaggcg 3353321
>tpe|BN000589.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx60 gene for class III peroxidase 60 precursor, exons 1-3 Length = 1221 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 257 caccgccctcgccacccgcaacgc 280 ||||||||||||||||||| |||| Sbjct: 519 caccgccctcgccacccgcgacgc 542
>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete sequence Length = 82895 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 caccgccctcgccacccgcaacgc 280 ||||||||||||||||||| |||| Sbjct: 71858 caccgccctcgccacccgcgacgc 71835
>gb|AF056321.1|AF056321 Actinomyces naeslundii urease gamma subunit UreA (ureA), urease beta subunit UreB (ureB), urease alpha subunit UreC (ureC), urease accessory protein UreE (ureE), urease accessory protein UreF (ureF), urease accessory protein UreG (ureG), and urease accessory protein UreD (ureD) genes, complete cds Length = 5482 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tccatggccgccgtcaccaa 136 |||||||||||||||||||| Sbjct: 3935 tccatggccgccgtcaccaa 3954
>gb|AF048784.1|AF048784 Actinomyces naeslundii urease accessory protein (ureG) gene, complete cds Length = 681 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tccatggccgccgtcaccaa 136 |||||||||||||||||||| Sbjct: 160 tccatggccgccgtcaccaa 179
>emb|AJ891095.1| Lepilemur edwardsi partial vwf gene for Von Willebrand factor precursor Length = 1197 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aagaagaagaaggtcatcat 154 |||||||||||||||||||| Sbjct: 481 aagaagaagaaggtcatcat 500
>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12, complete sequence Length = 186142 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cctcaccaccatcttcggca 249 |||||||||||||||||||| Sbjct: 935 cctcaccaccatcttcggca 916
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 caccgccctcgccacccgcaacgc 280 ||||||||||||||||||| |||| Sbjct: 24128 caccgccctcgccacccgcgacgc 24105
>gb|U31619.1|PCU31619 Procavia capensis von Willebrand factor (vWF) gene, partial cds Length = 1278 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aagaagaagaaggtcatcat 154 |||||||||||||||||||| Sbjct: 530 aagaagaagaaggtcatcat 549 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,124,337 Number of Sequences: 3902068 Number of extensions: 5124337 Number of successful extensions: 94432 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91787 Number of HSP's gapped (non-prelim): 2645 length of query: 565 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 542 effective length of database: 17,143,297,704 effective search space: 9291667355568 effective search space used: 9291667355568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
