>POLG_HCVJ6 (P26660) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = -3

Query: 515  GDGGAERVADHAERGAAHPELPQELRLRVPRAAPQLPPLAGPVLDP--EPALV------R 360
            GD G    AD A+ G+  P  P EL L    +   +PPL G   DP  EP  V      +
Sbjct: 2358 GDSGLSTGADAADSGSRTP--PDELALSETGSISSMPPLEGEPGDPDLEPEQVELQPPPQ 2415

Query: 359  RGLVASSSSAG 327
             G+V   S +G
Sbjct: 2416 GGVVTPGSGSG 2426

>TOIP1_PONPY (Q5R7A3) Torsin-1A-interacting protein 1|
          Length = 598

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
 Frame = -3

Query: 512 DGGAERVADHA------ERGAAHPELPQELRLR----VPRAAPQLPPLAGPVLDPEPALV 363
           D   E V + A      +R    P+  +E++ R    + +   Q PPL      P P + 
Sbjct: 93  DSAKEEVRESAYYLRSRQRRQPRPQEAEEMKTRRTTRLQQQHSQQPPL-----QPSPVMT 147

Query: 362 RRGLVASSSSAGDDPA 315
           RRGL  S SS  D+P+
Sbjct: 148 RRGLRDSHSSEEDEPS 163

>FTSK_CORGL (Q8NP53) DNA translocase ftsK|
          Length = 921

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
 Frame = -3

Query: 509 GGAERVADHAERGAAHPELPQE-LRLRVPRAAPQLPPLAGPVLDPEPALVRRGLVASSSS 333
           G  ER  +    G A    P   L    PR  P L P   PV  P P   RR   +    
Sbjct: 241 GHVERELESRASGRAPSRTPSRALPKAAPRRTPPLTPPPAPVPAPAPTPARRPAASLDKY 300

Query: 332 AGDDPALGGPA 300
             DD     PA
Sbjct: 301 PVDDAKAEAPA 311

>RPE_STRCO (Q9L0Z5) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)|
           (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E)
          Length = 228

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 24/71 (33%), Positives = 33/71 (46%)
 Frame = -3

Query: 512 DGGAERVADHAERGAAHPELPQELRLRVPRAAPQLPPLAGPVLDPEPALVRRGLVASSSS 333
           + GA  V  HAE  AA   L +E+R +  RA+  L P A PV   E  L    ++   + 
Sbjct: 79  EAGAGSVTFHAEAAAAPVRLAREIRAKGARASMALKP-ATPVEPYEDLLPELDMLLIMTV 137

Query: 332 AGDDPALGGPA 300
              +P  GG A
Sbjct: 138 ---EPGFGGQA 145

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2161

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = -3

Query: 506 GAERVADHAERGAAHPELPQELRLRVPRAAP-QLPPLAGPVLDPEPALVRRGLVASSSSA 330
           G E   D  +  +   ELP         + P +  P A P+  P P    RG V +    
Sbjct: 366 GEEPETDGKKGTSPGSELPPPKTAWTENSRPSETEPAAPPIPKPPPPPPHRGPVGNWGPP 425

Query: 329 GDDPALGGP 303
           GD P  GGP
Sbjct: 426 GDYPDRGGP 434

>TNK1_MOUSE (Q99ML2) Non-receptor tyrosine-protein kinase TNK1 (EC 2.7.10.2)|
           (Kinase of embryonic stem cells)
          Length = 666

 Score = 26.6 bits (57), Expect(2) = 8.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 499 SASQTMPNVARPIRNSRKNSASGYPG 422
           S+  T P+ ARP R S  N  +G PG
Sbjct: 549 SSQPTQPHKARPKRESSHNHRTGAPG 574



 Score = 20.8 bits (42), Expect(2) = 8.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 440 RLRVPRAAPQLPPLAGPVLDPE 375
           R   P A+    P  GP+ DPE
Sbjct: 569 RTGAPGASKATVPSGGPLSDPE 590

>SRPK2_HUMAN (P78362) Serine/threonine-protein kinase SRPK2 (EC 2.7.11.1)|
           (Serine/arginine-rich protein-specific kinase 2)
           (SR-protein-specific kinase 2) (SFRS protein kinase 2)
          Length = 688

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 452 PQELRLRVPRAAPQLPPLAGPVLDPEPALVRRGLVASSSSAGDDPA 315
           PQ+    VP   P  PP   P+ DP P      ++ S     +DPA
Sbjct: 16  PQQKAPLVPPPPPPPPPPPPPLPDPTPPEPEEEILGSDDEEQEDPA 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.131    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,939,401
Number of Sequences: 219361
Number of extensions: 448318
Number of successful extensions: 2310
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2303
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)