| Clone Name | bart34a07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155O14, full insert sequence Length = 2511 Score = 367 bits (185), Expect = 3e-98 Identities = 310/352 (88%) Strand = Plus / Plus Query: 205 ttacatggctatgctgccaagtgattcttcacatcacagaattgtagaaaatagccccta 264 ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| || Sbjct: 350 ttacatggctatgatgccaagtgattcatcacatcatggaattgtagaaaatagcccata 409 Query: 265 cagaatcacaaagagtgggaataagaaagctggcaaacttagtgcttcatggtatttcag 324 ||||| || || | ||||| || | |||| ||||| ||||||||||||||||||| Sbjct: 410 cagaactacccagggcaggaatgaggagactggtgaacttggtgcttcatggtatttcag 469 Query: 325 tagaaaggaaatagaagagaattctccgtccaagagggatggcattgatttaaagaaaga 384 ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| Sbjct: 470 tagaaaggaaatagaagagaattctccatccaggagggatggcattgatttgaagaaaga 529 Query: 385 gacttaccttcggaaatcgtattgcacttatctacaagatttggggatgcggctcanagc 444 | ||||||| || ||||| ||||| |||| ||||||||||||||| ||| |||| | || Sbjct: 530 gtcttacctccgaaaatcatattgtacttttctacaagatttgggcatgaggcttaaagt 589 Query: 445 gccacaagtgacaattgctacatctattgtgttctgtcaccgcttttaccttcgtcaatc 504 ||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| || Sbjct: 590 gccacaagtcactattgctacagctattgtgttctgtcaccgtttttaccttcgtcagtc 649 Query: 505 tcatgcaaaaaatgatagacgaacaatcgctactgtttgcatgttcttggct 556 |||||||||||||||||||||||||| || || |||||||||||||||||| Sbjct: 650 ccatgcaaaaaatgatagacgaacaattgccacagtttgcatgttcttggct 701
>dbj|AK100044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153K21, full insert sequence Length = 2571 Score = 367 bits (185), Expect = 3e-98 Identities = 310/352 (88%) Strand = Plus / Plus Query: 205 ttacatggctatgctgccaagtgattcttcacatcacagaattgtagaaaatagccccta 264 ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| || Sbjct: 348 ttacatggctatgatgccaagtgattcatcacatcatggaattgtagaaaatagcccata 407 Query: 265 cagaatcacaaagagtgggaataagaaagctggcaaacttagtgcttcatggtatttcag 324 ||||| || || | ||||| || | |||| ||||| ||||||||||||||||||| Sbjct: 408 cagaactacccagggcaggaatgaggagactggtgaacttggtgcttcatggtatttcag 467 Query: 325 tagaaaggaaatagaagagaattctccgtccaagagggatggcattgatttaaagaaaga 384 ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| Sbjct: 468 tagaaaggaaatagaagagaattctccatccaggagggatggcattgatttgaagaaaga 527 Query: 385 gacttaccttcggaaatcgtattgcacttatctacaagatttggggatgcggctcanagc 444 | ||||||| || ||||| ||||| |||| ||||||||||||||| ||| |||| | || Sbjct: 528 gtcttacctccgaaaatcatattgtacttttctacaagatttgggcatgaggcttaaagt 587 Query: 445 gccacaagtgacaattgctacatctattgtgttctgtcaccgcttttaccttcgtcaatc 504 ||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| || Sbjct: 588 gccacaagtcactattgctacagctattgtgttctgtcaccgtttttaccttcgtcagtc 647 Query: 505 tcatgcaaaaaatgatagacgaacaatcgctactgtttgcatgttcttggct 556 |||||||||||||||||||||||||| || || |||||||||||||||||| Sbjct: 648 ccatgcaaaaaatgatagacgaacaattgccacagtttgcatgttcttggct 699
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 226 bits (114), Expect = 6e-56 Identities = 204/234 (87%) Strand = Plus / Plus Query: 205 ttacatggctatgctgccaagtgattcttcacatcacagaattgtagaaaatagccccta 264 ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| || Sbjct: 17998106 ttacatggctatgatgccaagtgattcatcacatcatggaattgtagaaaatagcccata 17998165 Query: 265 cagaatcacaaagagtgggaataagaaagctggcaaacttagtgcttcatggtatttcag 324 ||||| || || | ||||| || | |||| ||||| ||||||||||||||||||| Sbjct: 17998166 cagaactacccagggcaggaatgaggagactggtgaacttggtgcttcatggtatttcag 17998225 Query: 325 tagaaaggaaatagaagagaattctccgtccaagagggatggcattgatttaaagaaaga 384 ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| Sbjct: 17998226 tagaaaggaaatagaagagaattctccatccaggagggatggcattgatttgaagaaaga 17998285 Query: 385 gacttaccttcggaaatcgtattgcacttatctacaagatttggggatgcggct 438 | ||||||| || ||||| ||||| |||| ||||||||||||||| ||| |||| Sbjct: 17998286 gtcttacctccgaaaatcatattgtacttttctacaagatttgggcatgaggct 17998339 Score = 115 bits (58), Expect = 2e-22 Identities = 76/82 (92%) Strand = Plus / Plus Query: 445 gccacaagtgacaattgctacatctattgtgttctgtcaccgcttttaccttcgtcaatc 504 ||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| || Sbjct: 17998877 gccacaagtcactattgctacagctattgtgttctgtcaccgtttttaccttcgtcagtc 17998936 Query: 505 tcatgcaaaaaatgatagacga 526 ||||||||||||||||||||| Sbjct: 17998937 ccatgcaaaaaatgatagacga 17998958
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 226 bits (114), Expect = 6e-56 Identities = 204/234 (87%) Strand = Plus / Plus Query: 205 ttacatggctatgctgccaagtgattcttcacatcacagaattgtagaaaatagccccta 264 ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| || Sbjct: 17924427 ttacatggctatgatgccaagtgattcatcacatcatggaattgtagaaaatagcccata 17924486 Query: 265 cagaatcacaaagagtgggaataagaaagctggcaaacttagtgcttcatggtatttcag 324 ||||| || || | ||||| || | |||| ||||| ||||||||||||||||||| Sbjct: 17924487 cagaactacccagggcaggaatgaggagactggtgaacttggtgcttcatggtatttcag 17924546 Query: 325 tagaaaggaaatagaagagaattctccgtccaagagggatggcattgatttaaagaaaga 384 ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| Sbjct: 17924547 tagaaaggaaatagaagagaattctccatccaggagggatggcattgatttgaagaaaga 17924606 Query: 385 gacttaccttcggaaatcgtattgcacttatctacaagatttggggatgcggct 438 | ||||||| || ||||| ||||| |||| ||||||||||||||| ||| |||| Sbjct: 17924607 gtcttacctccgaaaatcatattgtacttttctacaagatttgggcatgaggct 17924660 Score = 115 bits (58), Expect = 2e-22 Identities = 76/82 (92%) Strand = Plus / Plus Query: 445 gccacaagtgacaattgctacatctattgtgttctgtcaccgcttttaccttcgtcaatc 504 ||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| || Sbjct: 17925198 gccacaagtcactattgctacagctattgtgttctgtcaccgtttttaccttcgtcagtc 17925257 Query: 505 tcatgcaaaaaatgatagacga 526 ||||||||||||||||||||| Sbjct: 17925258 ccatgcaaaaaatgatagacga 17925279
>emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb0031E19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124294 Score = 226 bits (114), Expect = 6e-56 Identities = 204/234 (87%) Strand = Plus / Minus Query: 205 ttacatggctatgctgccaagtgattcttcacatcacagaattgtagaaaatagccccta 264 ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| || Sbjct: 87586 ttacatggctatgatgccaagtgattcatcacatcatggaattgtagaaaatagcccata 87527 Query: 265 cagaatcacaaagagtgggaataagaaagctggcaaacttagtgcttcatggtatttcag 324 ||||| || || | ||||| || | |||| ||||| ||||||||||||||||||| Sbjct: 87526 cagaactacccagggcaggaatgaggagactggtgaacttggtgcttcatggtatttcag 87467 Query: 325 tagaaaggaaatagaagagaattctccgtccaagagggatggcattgatttaaagaaaga 384 ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| Sbjct: 87466 tagaaaggaaatagaagagaattctccatccaggagggatggcattgatttgaagaaaga 87407 Query: 385 gacttaccttcggaaatcgtattgcacttatctacaagatttggggatgcggct 438 | ||||||| || ||||| ||||| |||| ||||||||||||||| ||| |||| Sbjct: 87406 gtcttacctccgaaaatcatattgtacttttctacaagatttgggcatgaggct 87353 Score = 115 bits (58), Expect = 2e-22 Identities = 76/82 (92%) Strand = Plus / Minus Query: 445 gccacaagtgacaattgctacatctattgtgttctgtcaccgcttttaccttcgtcaatc 504 ||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| || Sbjct: 86815 gccacaagtcactattgctacagctattgtgttctgtcaccgtttttaccttcgtcagtc 86756 Query: 505 tcatgcaaaaaatgatagacga 526 ||||||||||||||||||||| Sbjct: 86755 ccatgcaaaaaatgatagacga 86734
>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147543 Score = 226 bits (114), Expect = 6e-56 Identities = 204/234 (87%) Strand = Plus / Minus Query: 205 ttacatggctatgctgccaagtgattcttcacatcacagaattgtagaaaatagccccta 264 ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| || Sbjct: 448 ttacatggctatgatgccaagtgattcatcacatcatggaattgtagaaaatagcccata 389 Query: 265 cagaatcacaaagagtgggaataagaaagctggcaaacttagtgcttcatggtatttcag 324 ||||| || || | ||||| || | |||| ||||| ||||||||||||||||||| Sbjct: 388 cagaactacccagggcaggaatgaggagactggtgaacttggtgcttcatggtatttcag 329 Query: 325 tagaaaggaaatagaagagaattctccgtccaagagggatggcattgatttaaagaaaga 384 ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| Sbjct: 328 tagaaaggaaatagaagagaattctccatccaggagggatggcattgatttgaagaaaga 269 Query: 385 gacttaccttcggaaatcgtattgcacttatctacaagatttggggatgcggct 438 | ||||||| || ||||| ||||| |||| ||||||||||||||| ||| |||| Sbjct: 268 gtcttacctccgaaaatcatattgtacttttctacaagatttgggcatgaggct 215
>dbj|AK120409.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091M21, full insert sequence Length = 2643 Score = 192 bits (97), Expect = 8e-46 Identities = 216/256 (84%) Strand = Plus / Plus Query: 300 aacttagtgcttcatggtatttcagtagaaaggaaatagaagagaattctccgtccaaga 359 ||||| ||||||| |||||||| ||||||||||||||||| || ||||| || | | Sbjct: 318 aacttggtgcttcctggtattttagtagaaaggaaatagaggaaaattccttatcaagaa 377 Query: 360 gggatggcattgatttaaagaaagagacttaccttcggaaatcgtattgcacttatctac 419 | |||||||||||||| || |||||| |||| ||||| ||||| |||||||||| | | Sbjct: 378 gagatggcattgatttgaaaaaagagtcttatcttcgcaaatcatattgcactttcttgc 437 Query: 420 aagatttggggatgcggctcanagcgccacaagtgacaattgctacatctattgtgttct 479 | ||||| |||||| |||| | || ||| |||||||||||||||||| | || ||||| | Sbjct: 438 aggatttagggatgaggcttaaagtgcctcaagtgacaattgctacagccatcgtgtttt 497 Query: 480 gtcaccgcttttaccttcgtcaatctcatgcaaaaaatgatagacgaacaatcgctactg 539 |||| || |||| ||||||||||||||||||||||||||||||||| |||||||| || | Sbjct: 498 gtcatcgttttttccttcgtcaatctcatgcaaaaaatgatagacggacaatcgccacag 557 Query: 540 tttgcatgttcttggc 555 |||||||||||||||| Sbjct: 558 tttgcatgttcttggc 573 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 222 caagtgattcttcacatcacagaattgtagaaaatagccc 261 ||||||| ||||||||||| ||||||||||||| ||||| Sbjct: 240 caagtgactcttcacatcatggaattgtagaaaacagccc 279
>gb|BT024129.1| Zea mays clone EL01N0328C03 mRNA sequence Length = 1879 Score = 161 bits (81), Expect = 3e-36 Identities = 212/256 (82%) Strand = Plus / Plus Query: 300 aacttagtgcttcatggtatttcagtagaaaggaaatagaagagaattctccgtccaaga 359 ||||| |||||||||||||||| |||||||| |||||||| |||||||| | || | || Sbjct: 332 aacttggtgcttcatggtattttagtagaaaagaaatagaggagaattccctttcgagga 391 Query: 360 gggatggcattgatttaaagaaagagacttaccttcggaaatcgtattgcacttatctac 419 | |||||||||||| | ||||||||| |||| ||||| || || |||||||| | ||| | Sbjct: 392 gagatggcattgatctgaagaaagagtcttatcttcgcaagtcatattgcacatttctgc 451 Query: 420 aagatttggggatgcggctcanagcgccacaagtgacaattgctacatctattgtgttct 479 | |||||||||||| | || | || || ||||||||||||||||| |||| ||||||| Sbjct: 452 aggatttggggatgagacttaaagtacctcaagtgacaattgctactgctatagtgttct 511 Query: 480 gtcaccgcttttaccttcgtcaatctcatgcaaaaaatgatagacgaacaatcgctactg 539 |||| || || | ||||||||||| ||||| |||||||| ||||| ||||| || || | Sbjct: 512 gtcatcggttctttcttcgtcaatcgcatgccaaaaatgacagacggacaattgcaacag 571 Query: 540 tttgcatgttcttggc 555 | |||||||||||||| Sbjct: 572 tatgcatgttcttggc 587 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 224 agtgattcttcacatcacagaattgtagaaaatagcccctacagaat 270 ||||| ||||||||||| ||||||||||||||||||| |||||||| Sbjct: 256 agtgactcttcacatcatggaattgtagaaaatagcccgtacagaat 302
>dbj|AK120416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093B10, full insert sequence Length = 5433 Score = 133 bits (67), Expect = 7e-28 Identities = 97/107 (90%) Strand = Plus / Plus Query: 449 caagtgacaattgctacatctattgtgttctgtcaccgcttttaccttcgtcaatctcat 508 |||||||||||||||||| | || ||||| ||||| || |||| |||||||||||||||| Sbjct: 3253 caagtgacaattgctacagccatcgtgttttgtcatcgttttttccttcgtcaatctcat 3312 Query: 509 gcaaaaaatgatagacgaacaatcgctactgtttgcatgttcttggc 555 ||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 3313 gcaaaaaatgatagacggacaatcgccacagtttgcatgttcttggc 3359 Score = 75.8 bits (38), Expect = 1e-10 Identities = 95/114 (83%) Strand = Plus / Plus Query: 300 aacttagtgcttcatggtatttcagtagaaaggaaatagaagagaattctccgtccaaga 359 ||||| ||||||| |||||||| ||||||||||||||||| || ||||| || | | Sbjct: 2414 aacttggtgcttcctggtattttagtagaaaggaaatagaggaaaattccttatcaagaa 2473 Query: 360 gggatggcattgatttaaagaaagagacttaccttcggaaatcgtattgcactt 413 | |||||||||||||| || |||||| |||| ||||| ||||| |||||||||| Sbjct: 2474 gagatggcattgatttgaaaaaagagtcttatcttcgcaaatcatattgcactt 2527 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 222 caagtgattcttcacatcacagaattgtagaaaatagccc 261 ||||||| ||||||||||| ||||||||||||| ||||| Sbjct: 2336 caagtgactcttcacatcatggaattgtagaaaacagccc 2375
>gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0076K20, complete sequence Length = 127338 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 449 caagtgacaattgctacatctattgtgttctgtcaccgcttttaccttcgtcaatctcat 508 |||||||||||||||||| | || ||||| ||||| || |||| |||||||||||||||| Sbjct: 10594 caagtgacaattgctacagccatcgtgttttgtcatcgttttttccttcgtcaatctcat 10535 Query: 509 gcaaaaaatgatagacg 525 ||||||||||||||||| Sbjct: 10534 gcaaaaaatgatagacg 10518 Score = 75.8 bits (38), Expect = 1e-10 Identities = 95/114 (83%) Strand = Plus / Minus Query: 300 aacttagtgcttcatggtatttcagtagaaaggaaatagaagagaattctccgtccaaga 359 ||||| ||||||| |||||||| ||||||||||||||||| || ||||| || | | Sbjct: 11433 aacttggtgcttcctggtattttagtagaaaggaaatagaggaaaattccttatcaagaa 11374 Query: 360 gggatggcattgatttaaagaaagagacttaccttcggaaatcgtattgcactt 413 | |||||||||||||| || |||||| |||| ||||| ||||| |||||||||| Sbjct: 11373 gagatggcattgatttgaaaaaagagtcttatcttcgcaaatcatattgcactt 11320 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Minus Query: 222 caagtgattcttcacatcacagaattgtagaaaatagccc 261 ||||||| ||||||||||| ||||||||||||| ||||| Sbjct: 11511 caagtgactcttcacatcatggaattgtagaaaacagccc 11472 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 527 acaatcgctactgtttgcatgttcttggc 555 |||||||| || ||||||||||||||||| Sbjct: 9681 acaatcgccacagtttgcatgttcttggc 9653
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Plus Query: 449 caagtgacaattgctacatctattgtgttctgtcaccgcttttaccttcgtcaatctcat 508 |||||||||||||||||| | || ||||| ||||| || |||| |||||||||||||||| Sbjct: 2716204 caagtgacaattgctacagccatcgtgttttgtcatcgttttttccttcgtcaatctcat 2716263 Query: 509 gcaaaaaatgatagacg 525 ||||||||||||||||| Sbjct: 2716264 gcaaaaaatgatagacg 2716280 Score = 75.8 bits (38), Expect = 1e-10 Identities = 95/114 (83%) Strand = Plus / Plus Query: 300 aacttagtgcttcatggtatttcagtagaaaggaaatagaagagaattctccgtccaaga 359 ||||| ||||||| |||||||| ||||||||||||||||| || ||||| || | | Sbjct: 2715365 aacttggtgcttcctggtattttagtagaaaggaaatagaggaaaattccttatcaagaa 2715424 Query: 360 gggatggcattgatttaaagaaagagacttaccttcggaaatcgtattgcactt 413 | |||||||||||||| || |||||| |||| ||||| ||||| |||||||||| Sbjct: 2715425 gagatggcattgatttgaaaaaagagtcttatcttcgcaaatcatattgcactt 2715478 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 222 caagtgattcttcacatcacagaattgtagaaaatagccc 261 ||||||| ||||||||||| ||||||||||||| ||||| Sbjct: 2715287 caagtgactcttcacatcatggaattgtagaaaacagccc 2715326 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 527 acaatcgctactgtttgcatgttcttggc 555 |||||||| || ||||||||||||||||| Sbjct: 2717117 acaatcgccacagtttgcatgttcttggc 2717145
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Plus Query: 449 caagtgacaattgctacatctattgtgttctgtcaccgcttttaccttcgtcaatctcat 508 |||||||||||||||||| | || ||||| ||||| || |||| |||||||||||||||| Sbjct: 2725235 caagtgacaattgctacagccatcgtgttttgtcatcgttttttccttcgtcaatctcat 2725294 Query: 509 gcaaaaaatgatagacg 525 ||||||||||||||||| Sbjct: 2725295 gcaaaaaatgatagacg 2725311 Score = 75.8 bits (38), Expect = 1e-10 Identities = 95/114 (83%) Strand = Plus / Plus Query: 300 aacttagtgcttcatggtatttcagtagaaaggaaatagaagagaattctccgtccaaga 359 ||||| ||||||| |||||||| ||||||||||||||||| || ||||| || | | Sbjct: 2724396 aacttggtgcttcctggtattttagtagaaaggaaatagaggaaaattccttatcaagaa 2724455 Query: 360 gggatggcattgatttaaagaaagagacttaccttcggaaatcgtattgcactt 413 | |||||||||||||| || |||||| |||| ||||| ||||| |||||||||| Sbjct: 2724456 gagatggcattgatttgaaaaaagagtcttatcttcgcaaatcatattgcactt 2724509 Score = 48.1 bits (24), Expect = 0.031 Identities = 36/40 (90%) Strand = Plus / Plus Query: 222 caagtgattcttcacatcacagaattgtagaaaatagccc 261 ||||||| ||||||||||| ||||||||||||| ||||| Sbjct: 2724318 caagtgactcttcacatcatggaattgtagaaaacagccc 2724357 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 527 acaatcgctactgtttgcatgttcttggc 555 |||||||| || ||||||||||||||||| Sbjct: 2726148 acaatcgccacagtttgcatgttcttggc 2726176
>gb|AY224077.1| Zea mays strain B73 clone MMPp3 endosperm-specific maternally demethylated fragment Length = 554 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 358 gagggatggcattgatttaaagaaagagacttaccttcggaaatcgtattgcacttatct 417 |||||| ||||||||| | ||||||||| |||| ||||| || || |||||||| | ||| Sbjct: 15 gagggacggcattgatctgaagaaagagtcttatcttcgcaagtcatattgcacatttct 74 Query: 418 acaagatttggggatgcggct 438 || |||||||||||| |||| Sbjct: 75 gcaggatttggggatgaggct 95
>ref|NM_123887.2| Arabidopsis thaliana cyclin-dependent protein kinase AT5G45190 mRNA, complete cds Length = 2094 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 326 agaaaggaaatagaagagaattctccgtccaagagggatggcattgatttaaagaaagag 385 ||||| ||||||||||||||||| ||||| | | |||||| ||||| |||||||| || Sbjct: 275 agaaaagaaatagaagagaattcaccgtcaaggttggatggtattgacttaaagaaggaa 334 Query: 386 acttaccttcggaaatc 402 || ||||| || ||||| Sbjct: 335 acatacctccgcaaatc 351
>emb|AL161551.2|ATCHRIV51 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 51 Length = 197114 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Plus Query: 476 ttctgtcaccgcttttaccttcgtcaatctcatgcaaaaaatgatagac 524 ||||||||||| || | |||||||||||| ||||| |||||||| |||| Sbjct: 52211 ttctgtcaccgattcttccttcgtcaatcacatgcgaaaaatgacagac 52259
>emb|AL021768.1|ATF24J7 Arabidopsis thaliana DNA chromosome 4, BAC clone F24J7 (ESSA project) Length = 86554 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Plus Query: 476 ttctgtcaccgcttttaccttcgtcaatctcatgcaaaaaatgatagac 524 ||||||||||| || | |||||||||||| ||||| |||||||| |||| Sbjct: 54851 ttctgtcaccgattcttccttcgtcaatcacatgcgaaaaatgacagac 54899
>dbj|AK221364.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL25-33-G16 Length = 1875 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Plus Query: 476 ttctgtcaccgcttttaccttcgtcaatctcatgcaaaaaatgatagac 524 ||||||||||| || | |||||||||||| ||||| |||||||| |||| Sbjct: 387 ttctgtcaccgattcttccttcgtcaatcacatgcgaaaaatgacagac 435
>dbj|AK221363.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL25-32-E11 Length = 1875 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Plus Query: 476 ttctgtcaccgcttttaccttcgtcaatctcatgcaaaaaatgatagac 524 ||||||||||| || | |||||||||||| ||||| |||||||| |||| Sbjct: 387 ttctgtcaccgattcttccttcgtcaatcacatgcgaaaaatgacagac 435
>emb|BX833162.1|CNS0A26Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL37ZA04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 644 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 326 agaaaggaaatagaagagaattctccgtccaagagggatggcattgatttaaagaaagag 385 ||||| ||||||||||||||||| ||||| | | |||||| ||||| |||||||| || Sbjct: 239 agaaaagaaatagaagagaattcaccgtcaaggttggatggtattgacttaaagaaggaa 298 Query: 386 acttaccttcggaaatc 402 || ||||| || ||||| Sbjct: 299 acatacctccgcaaatc 315
>emb|BX830361.1|CNS09YX4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB75ZH08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2010 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 326 agaaaggaaatagaagagaattctccgtccaagagggatggcattgatttaaagaaagag 385 ||||| ||||||||||||||||| ||||| | | |||||| ||||| |||||||| || Sbjct: 242 agaaaagaaatagaagagaattcaccgtcaaggttggatggtattgacttaaagaaggaa 301 Query: 386 acttaccttcggaaatc 402 || ||||| || ||||| Sbjct: 302 acatacctccgcaaatc 318
>dbj|AB012240.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K18C1 Length = 71618 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Minus Query: 326 agaaaggaaatagaagagaattctccgtccaagagggatggcattgatttaaagaaagag 385 ||||| ||||||||||||||||| ||||| | | |||||| ||||| |||||||| || Sbjct: 33701 agaaaagaaatagaagagaattcaccgtcaaggttggatggtattgacttaaagaaggaa 33642 Query: 386 acttaccttcggaaatc 402 || ||||| || ||||| Sbjct: 33641 acatacctccgcaaatc 33625
>dbj|AK198279.1| Mus musculus cDNA, clone:Y1G0127K23, strand:unspecified Length = 381 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 467 tctattgtgttctgtcaccgct 488 |||||||||||||||||||||| Sbjct: 176 tctattgtgttctgtcaccgct 155
>gb|BC032171.1| Mus musculus cDNA clone IMAGE:5346853, **** WARNING: chimeric clone **** Length = 5081 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 467 tctattgtgttctgtcaccgc 487 ||||||||||||||||||||| Sbjct: 4523 tctattgtgttctgtcaccgc 4503
>gb|AC160411.8| Mus musculus BAC RP23-231J3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207444 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 467 tctattgtgttctgtcaccgc 487 ||||||||||||||||||||| Sbjct: 190379 tctattgtgttctgtcaccgc 190399
>dbj|AK132664.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4921516A02 product:unclassifiable, full insert sequence Length = 3601 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 467 tctattgtgttctgtcaccgc 487 ||||||||||||||||||||| Sbjct: 3002 tctattgtgttctgtcaccgc 3022
>gb|AC015890.9| Mus musculus chromosome 10, clone RP21-244O21, complete sequence Length = 160840 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 467 tctattgtgttctgtcaccgc 487 ||||||||||||||||||||| Sbjct: 90251 tctattgtgttctgtcaccgc 90271
>gb|AC027804.7| Homo sapiens chromosome 11, clone RP11-324J3, complete sequence Length = 172272 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 33 gacaccgaggagaggcggcgccgca 57 |||||||||||||||||| |||||| Sbjct: 136358 gacaccgaggagaggcggtgccgca 136334
>gb|AC025913.11| Mus musculus 10 BAC RP23-287L13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228124 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 467 tctattgtgttctgtcaccgc 487 ||||||||||||||||||||| Sbjct: 110702 tctattgtgttctgtcaccgc 110722
>emb|BX833525.1|CNS0A231 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL60ZB08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 638 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 326 agaaaggaaatagaagagaattctccgtc 354 ||||| ||||||||||||||||| ||||| Sbjct: 240 agaaaagaaatagaagagaattcaccgtc 268
>gb|AF296837.1|F7K24 Arabidopsis thaliana BAC F7K24 Length = 103024 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 498 gtcaatctcatgcaaaaaatg 518 ||||||||||||||||||||| Sbjct: 24041 gtcaatctcatgcaaaaaatg 24021
>emb|AJ335961.1|HSA335961 Homo sapiens genomic sequence surrounding NotI site, clone NR1-0I22RS Length = 740 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 33 gacaccgaggagaggcggcgccgca 57 |||||||||||||||||| |||||| Sbjct: 209 gacaccgaggagaggcggtgccgca 185
>emb|AJ335879.1|HSA335879 Homo sapiens genomic sequence surrounding NotI site, clone NR5-DM7RS Length = 801 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 33 gacaccgaggagaggcggcgccgca 57 |||||||||||||||||| |||||| Sbjct: 209 gacaccgaggagaggcggtgccgca 185
>emb|CR855860.7| Zebrafish DNA sequence from clone CH211-239D6 in linkage group 19, complete sequence Length = 90948 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 511 aaaaaatgatagacgaacaat 531 ||||||||||||||||||||| Sbjct: 5686 aaaaaatgatagacgaacaat 5666
>emb|AL844183.6| Mouse DNA sequence from clone RP23-393P4 on chromosome 4, complete sequence Length = 82967 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 449 caagtgacaattgctacatct 469 ||||||||||||||||||||| Sbjct: 15330 caagtgacaattgctacatct 15350
>ref|NM_102528.2| Arabidopsis thaliana cyclin-dependent protein kinase AT1G27630 mRNA, complete cds Length = 1527 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 caatctcatgcaaaaaatga 519 |||||||||||||||||||| Sbjct: 492 caatctcatgcaaaaaatga 511
>gb|AC134342.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E01, complete sequence Length = 180426 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 atctacaagatttggggatg 433 |||||||||||||||||||| Sbjct: 14154 atctacaagatttggggatg 14135
>gb|AY620049.1| Subilla confinis isolate Subcon1 cytochrome oxidase subunit 3 (COX3) gene, partial cds; mitochondrial Length = 667 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 cacatcacagaattgtagaaaata 257 |||||||||||||| ||||||||| Sbjct: 390 cacatcacagaattttagaaaata 413
>gb|AC134790.6| Mus musculus chromosome 15, clone RP24-541O5, complete sequence Length = 185593 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 agaaaggaaatagaagagaa 345 |||||||||||||||||||| Sbjct: 80715 agaaaggaaatagaagagaa 80696
>gb|AC016877.11| Homo sapiens chromosome 8, clone RP11-44N12, complete sequence Length = 188593 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 agaaaggaaatagaagagaa 345 |||||||||||||||||||| Sbjct: 56710 agaaaggaaatagaagagaa 56729
>gb|AC126547.4| Mus musculus BAC clone RP24-180F1 from chromosome 13, complete sequence Length = 181823 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 agtgcttcatggtatttcag 324 |||||||||||||||||||| Sbjct: 68518 agtgcttcatggtatttcag 68499
>ref|XM_764431.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_336_49945_45419) partial mRNA Length = 4527 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 agtagaaaggaaatagaaga 342 |||||||||||||||||||| Sbjct: 2715 agtagaaaggaaatagaaga 2696
>emb|AL138737.25| Human DNA sequence from clone RP3-332B22 on chromosome 6 Contains a novel gene, complete sequence Length = 70025 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 acagaattgtagaaaatagc 259 |||||||||||||||||||| Sbjct: 48658 acagaattgtagaaaatagc 48677
>emb|AL133541.21| Human DNA sequence from clone RP1-126E20 on chromosome 6 Contains the 3' end of the BMP6 gene for bone morphogenetic protein 6, the gene for a novel protein similar to protein disulfide isomerases and a CpG island, complete sequence Length = 117952 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 aaatagcccctacagaatca 272 |||||||||||||||||||| Sbjct: 52017 aaatagcccctacagaatca 52036
>emb|CR392021.10| Zebrafish DNA sequence from clone CH211-126H20 in linkage group 5, complete sequence Length = 182008 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tctgttactcttgttttatc 27 |||||||||||||||||||| Sbjct: 65644 tctgttactcttgttttatc 65663
>gb|AC012229.8| Homo sapiens chromosome 15, clone RP11-182L7, complete sequence Length = 119723 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 aataagaaagctggcaaacttagt 307 |||||| ||||||||||||||||| Sbjct: 44612 aataaggaagctggcaaacttagt 44635
>gb|AC023170.10| Homo sapiens chromosome 10 clone RP11-373P23, complete sequence Length = 195448 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 aaaaatgatagacgaacaat 531 |||||||||||||||||||| Sbjct: 46183 aaaaatgatagacgaacaat 46202
>gb|AC092072.2| Homo sapiens chromosome 19 clone LLNLR-246F7, complete sequence Length = 28563 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 ccaagtgattcttcacatca 240 |||||||||||||||||||| Sbjct: 23845 ccaagtgattcttcacatca 23864
>gb|AF344323.1| Arabidopsis thaliana clone C00234 (e) putative cyclin (At1g27630) mRNA, complete cds Length = 954 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 caatctcatgcaaaaaatga 519 |||||||||||||||||||| Sbjct: 286 caatctcatgcaaaaaatga 305
>gb|AF345756.1|AF345756 Drosophila melanogaster haplotype s10 white gene, intron 1, partial sequence Length = 536 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 attgcacttatctacaagat 424 |||||||||||||||||||| Sbjct: 395 attgcacttatctacaagat 414
>gb|AC153869.7| Mus musculus 6 BAC RP23-386A17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222826 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aaaggaaatagaagagaatt 347 |||||||||||||||||||| Sbjct: 8667 aaaggaaatagaagagaatt 8648
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 atctacaagatttggggatg 433 |||||||||||||||||||| Sbjct: 15601271 atctacaagatttggggatg 15601252
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 atctacaagatttggggatg 433 |||||||||||||||||||| Sbjct: 15622050 atctacaagatttggggatg 15622031
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 tgggaataagaaagctggca 299 |||||||||||||||||||| Sbjct: 30004301 tgggaataagaaagctggca 30004282
>dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480C01 Length = 151100 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 tgggaataagaaagctggca 299 |||||||||||||||||||| Sbjct: 148859 tgggaataagaaagctggca 148840
>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0690B02 Length = 153116 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 tgggaataagaaagctggca 299 |||||||||||||||||||| Sbjct: 291 tgggaataagaaagctggca 272
>gb|AC012375.3|AC012375 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence Length = 106753 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 caatctcatgcaaaaaatga 519 |||||||||||||||||||| Sbjct: 24628 caatctcatgcaaaaaatga 24647
>gb|AY087303.1| Arabidopsis thaliana clone 33877 mRNA, complete sequence Length = 1527 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 caatctcatgcaaaaaatga 519 |||||||||||||||||||| Sbjct: 491 caatctcatgcaaaaaatga 510
>dbj|AP005886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0689B09 Length = 144932 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 atctacaagatttggggatg 433 |||||||||||||||||||| Sbjct: 122126 atctacaagatttggggatg 122107
>dbj|AK117692.1| Arabidopsis thaliana At1g27630 mRNA for putative cyclin, complete cds, clone: RAFL17-35-L17 Length = 1486 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 caatctcatgcaaaaaatga 519 |||||||||||||||||||| Sbjct: 492 caatctcatgcaaaaaatga 511
>emb|AL365294.4|CNS05TF4 Human chromosome 14 DNA sequence BAC R-746E9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 188478 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 cacagaattgtagaaaatag 258 |||||||||||||||||||| Sbjct: 98433 cacagaattgtagaaaatag 98452
>gb|AC153627.2| Mus musculus 6 BAC RP23-104H13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198060 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 aaaggaaatagaagagaatt 347 |||||||||||||||||||| Sbjct: 72196 aaaggaaatagaagagaatt 72215
>gb|AC005916.2|T17H3 Arabidopsis thaliana chromosome 1 BAC T17H3 sequence, complete sequence Length = 65839 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 caatctcatgcaaaaaatga 519 |||||||||||||||||||| Sbjct: 57041 caatctcatgcaaaaaatga 57060
>gb|AC006256.1|AC006256 Homo sapiens chromosome 18, clone hRPK.12_J_19, complete sequence Length = 157803 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 cacagaattgtagaaaatag 258 |||||||||||||||||||| Sbjct: 122878 cacagaattgtagaaaatag 122859
>dbj|AP006366.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT35C03, TM0176a, complete sequence Length = 119525 Score = 40.1 bits (20), Expect = 7.5 Identities = 47/56 (83%) Strand = Plus / Minus Query: 371 gatttaaagaaagagacttaccttcggaaatcgtattgcacttatctacaagattt 426 ||||| |||||||| ||||||| || ||||| || || || |||||||||||||| Sbjct: 110849 gatttgaagaaagaagcttacctacgcaaatcatactgtacatatctacaagattt 110794
>emb|AL139099.3|CNS01DX7 Human chromosome 14 DNA sequence BAC R-649E7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157010 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 agtagaaaggaaatagaaga 342 |||||||||||||||||||| Sbjct: 119697 agtagaaaggaaatagaaga 119678
>dbj|AP003691.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1594B3, complete sequence Length = 157952 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 agaaaggaaatagaagagaa 345 |||||||||||||||||||| Sbjct: 58596 agaaaggaaatagaagagaa 58615 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,841,681 Number of Sequences: 3902068 Number of extensions: 4841681 Number of successful extensions: 94845 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94518 Number of HSP's gapped (non-prelim): 325 length of query: 556 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 533 effective length of database: 17,143,297,704 effective search space: 9137377676232 effective search space used: 9137377676232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)