| Clone Name | bart31b05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004M14, full insert sequence Length = 1960 Score = 266 bits (134), Expect = 8e-68 Identities = 212/238 (89%) Strand = Plus / Plus Query: 342 gccgctcaagatcggcgtcgtgctctcgggcggccaggcgccgggcgggcacaatgtgat 401 |||||||||| |||||||||||||||| ||||| |||||||| ||||| |||||||| || Sbjct: 351 gccgctcaaggtcggcgtcgtgctctccggcggtcaggcgcccggcggccacaatgtcat 410 Query: 402 ctgcggcatctttgattacctgcaggagcgtgccaaaggcagcaccatgtatggattcaa 461 |||||||||||| |||||||||||||| ||| ||||| | ||||||||||||||| Sbjct: 411 ctgcggcatcttcgattacctgcaggaatatgcaaaaggatccgtcatgtatggattcaa 470 Query: 462 gggaggcccagctggtgtcatgaagggcaagtacgtcgagctgactgctgatttcgtgta 521 |||||| |||||||| ||||||||| |||||||||| ||||| ||||| |||| ||||| Sbjct: 471 gggaggtccagctggagtcatgaagtgcaagtacgttgagctcactgcggattatgtgta 530 Query: 522 cccctacagaaaccagggtggattcgatatgatctgcagtggaagggacaagattgaa 579 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 531 cccctacagaaaccagggtggatttgatatgatctgcagtggtagggacaagattgaa 588 Score = 149 bits (75), Expect = 1e-32 Identities = 144/167 (86%) Strand = Plus / Plus Query: 136 ctcgcgtccgtgtacagcgaggtgcagacgagccgcatcgcgcacatgctgcccctcccc 195 |||||||| || ||||||||||||||||| |||||| || |||| ||| ||||||||| Sbjct: 145 ctcgcgtcggtctacagcgaggtgcagaccagccgcctcaagcacgcgctccccctcccc 204 Query: 196 tccgtcctccgctcccacttcaccctcgccgacgggcccgccagcaccgcagcggggagc 255 |||||||||||||||| |||| ||||||||||||| ||||||||| |||| || || | | Sbjct: 205 tccgtcctccgctcccccttcgccctcgccgacggccccgccagctccgccgccggcaac 264 Query: 256 cccgatgagatcgccaagctgttcccctgcctctacggccagccgtc 302 |||| ||||||||| |||||||||||| ||| | |||||||||||| Sbjct: 265 cccggtgagatcgcgaagctgttccccaacctgttcggccagccgtc 311 Score = 40.1 bits (20), Expect = 8.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 578 aaccagcatctaggcagttgtttgacttcctgccca 613 |||||| ||| ||||| |||||||||||||||||| Sbjct: 1180 aaccagaatccaggcaactgtttgacttcctgccca 1215
>gb|AY104192.1| Zea mays PCO077725 mRNA sequence Length = 1688 Score = 133 bits (67), Expect = 7e-28 Identities = 112/127 (88%) Strand = Plus / Plus Query: 453 tggattcaagggaggcccagctggtgtcatgaagggcaagtacgtcgagctgactgctga 512 |||||||||||||||||| ||||| |||||||| |||| || || || || ||| | || Sbjct: 21 tggattcaagggaggccctgctgggatcatgaagtgcaaatatgtggaactcacttcaga 80 Query: 513 tttcgtgtacccctacagaaaccagggtggattcgatatgatctgcagtggaagggacaa 572 || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 81 ctttgtgtatccctacagaaaccagggcggattcgatatgatctgcagtggaagggacaa 140 Query: 573 gattgaa 579 ||||||| Sbjct: 141 gattgaa 147
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 119 bits (60), Expect = 1e-23 Identities = 84/92 (91%) Strand = Plus / Minus Query: 447 catgtatggattcaagggaggcccagctggtgtcatgaagggcaagtacgtcgagctgac 506 ||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||| || Sbjct: 7664195 catgtatggattcaagggaggtccagctggagtcatgaagtgcaagtacgttgagctcac 7664136 Query: 507 tgctgatttcgtgtacccctacagaaaccagg 538 ||| |||| |||||||||||||||||||||| Sbjct: 7664135 tgcggattatgtgtacccctacagaaaccagg 7664104 Score = 115 bits (58), Expect = 2e-22 Identities = 97/110 (88%) Strand = Plus / Minus Query: 136 ctcgcgtccgtgtacagcgaggtgcagacgagccgcatcgcgcacatgctgcccctcccc 195 |||||||| || ||||||||||||||||| |||||| || |||| ||| ||||||||| Sbjct: 7664984 ctcgcgtcggtctacagcgaggtgcagaccagccgcctcaagcacgcgctccccctcccc 7664925 Query: 196 tccgtcctccgctcccacttcaccctcgccgacgggcccgccagcaccgc 245 |||||||||||||||| |||| ||||||||||||| ||||||||| |||| Sbjct: 7664924 tccgtcctccgctcccccttcgccctcgccgacggccccgccagctccgc 7664875 Score = 95.6 bits (48), Expect = 2e-16 Identities = 66/72 (91%) Strand = Plus / Minus Query: 342 gccgctcaagatcggcgtcgtgctctcgggcggccaggcgccgggcgggcacaatgtgat 401 |||||||||| |||||||||||||||| ||||| |||||||| ||||| |||||||| || Sbjct: 7664666 gccgctcaaggtcggcgtcgtgctctccggcggtcaggcgcccggcggccacaatgtcat 7664607 Query: 402 ctgcggcatctt 413 |||||||||||| Sbjct: 7664606 ctgcggcatctt 7664595 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 536 agggtggattcgatatgatctgcagtggaagggacaagattgaa 579 |||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 7663799 agggtggatttgatatgatctgcagtggtagggacaagattgaa 7663756 Score = 44.1 bits (22), Expect = 0.53 Identities = 37/42 (88%) Strand = Plus / Minus Query: 261 tgagatcgccaagctgttcccctgcctctacggccagccgtc 302 ||||||||| |||||||||||| ||| | |||||||||||| Sbjct: 7664747 tgagatcgcgaagctgttccccaacctgttcggccagccgtc 7664706 Score = 40.1 bits (20), Expect = 8.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 578 aaccagcatctaggcagttgtttgacttcctgccca 613 |||||| ||| ||||| |||||||||||||||||| Sbjct: 7661413 aaccagaatccaggcaactgtttgacttcctgccca 7661378
>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1136_C11 Length = 124827 Score = 119 bits (60), Expect = 1e-23 Identities = 84/92 (91%) Strand = Plus / Minus Query: 447 catgtatggattcaagggaggcccagctggtgtcatgaagggcaagtacgtcgagctgac 506 ||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||| || Sbjct: 87450 catgtatggattcaagggaggtccagctggagtcatgaagtgcaagtacgttgagctcac 87391 Query: 507 tgctgatttcgtgtacccctacagaaaccagg 538 ||| |||| |||||||||||||||||||||| Sbjct: 87390 tgcggattatgtgtacccctacagaaaccagg 87359 Score = 115 bits (58), Expect = 2e-22 Identities = 97/110 (88%) Strand = Plus / Minus Query: 136 ctcgcgtccgtgtacagcgaggtgcagacgagccgcatcgcgcacatgctgcccctcccc 195 |||||||| || ||||||||||||||||| |||||| || |||| ||| ||||||||| Sbjct: 88239 ctcgcgtcggtctacagcgaggtgcagaccagccgcctcaagcacgcgctccccctcccc 88180 Query: 196 tccgtcctccgctcccacttcaccctcgccgacgggcccgccagcaccgc 245 |||||||||||||||| |||| ||||||||||||| ||||||||| |||| Sbjct: 88179 tccgtcctccgctcccccttcgccctcgccgacggccccgccagctccgc 88130 Score = 95.6 bits (48), Expect = 2e-16 Identities = 66/72 (91%) Strand = Plus / Minus Query: 342 gccgctcaagatcggcgtcgtgctctcgggcggccaggcgccgggcgggcacaatgtgat 401 |||||||||| |||||||||||||||| ||||| |||||||| ||||| |||||||| || Sbjct: 87921 gccgctcaaggtcggcgtcgtgctctccggcggtcaggcgcccggcggccacaatgtcat 87862 Query: 402 ctgcggcatctt 413 |||||||||||| Sbjct: 87861 ctgcggcatctt 87850 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 536 agggtggattcgatatgatctgcagtggaagggacaagattgaa 579 |||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 87054 agggtggatttgatatgatctgcagtggtagggacaagattgaa 87011 Score = 44.1 bits (22), Expect = 0.53 Identities = 37/42 (88%) Strand = Plus / Minus Query: 261 tgagatcgccaagctgttcccctgcctctacggccagccgtc 302 ||||||||| |||||||||||| ||| | |||||||||||| Sbjct: 88002 tgagatcgcgaagctgttccccaacctgttcggccagccgtc 87961 Score = 40.1 bits (20), Expect = 8.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 578 aaccagcatctaggcagttgtttgacttcctgccca 613 |||||| ||| ||||| |||||||||||||||||| Sbjct: 84668 aaccagaatccaggcaactgtttgacttcctgccca 84633
>gb|BT012702.1| Lycopersicon esculentum clone 113577R, mRNA sequence Length = 1952 Score = 105 bits (53), Expect = 2e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 442 agcaccatgtatggattcaagggaggcccagctggtgtcatgaagggcaagtacgtcgag 501 ||||| ||||||||||||| ||| || |||||||| ||||||||||| ||||| || | | Sbjct: 463 agcacaatgtatggattcaggggtggaccagctggagtcatgaagggaaagtatgtgggg 522 Query: 502 ctgactgctgatttcgtgtacccctacagaaaccagggtggattcgatatgatctgcagt 561 |||| | || ||| | ||||| |||||||| ||||||||||| |||||||| |||||| Sbjct: 523 ttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatttgcagt 582 Query: 562 ggaagggacaagattga 578 || |||||||||||||| Sbjct: 583 ggtagggacaagattga 599
>gb|M55191.1|POTPFPB Potato pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) beta-subunit mRNA, complete cds Length = 1986 Score = 105 bits (53), Expect = 2e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 442 agcaccatgtatggattcaagggaggcccagctggtgtcatgaagggcaagtacgtcgag 501 ||||| |||||||| |||| ||| || |||||||| ||||||||||| ||||| || | | Sbjct: 424 agcacaatgtatgggttcaggggtggaccagctggggtcatgaagggaaagtatgtggtg 483 Query: 502 ctgactgctgatttcgtgtacccctacagaaaccagggtggattcgatatgatctgcagt 561 |||| | || ||| | ||||| |||||||| ||||||||||| ||||||||||||||| Sbjct: 484 ttgaccccggagttcatttacccatacagaaatcagggtggatttgatatgatctgcagt 543 Query: 562 ggaagggacaagattga 578 || |||||||||||||| Sbjct: 544 ggtagggacaagattga 560
>ref|NM_101072.3| Arabidopsis thaliana 6-phosphofructokinase AT1G12000 mRNA, complete cds Length = 2072 Score = 95.6 bits (48), Expect = 2e-16 Identities = 138/168 (82%) Strand = Plus / Plus Query: 412 tttgattacctgcaggagcgtgccaaaggcagcaccatgtatggattcaagggaggccca 471 |||||||||||||| |||||||| ||||| ||||| | || || |||||||| || ||| Sbjct: 460 tttgattacctgcaagagcgtgcgaaaggtagcacattttacgggttcaagggtggtcca 519 Query: 472 gctggtgtcatgaagggcaagtacgtcgagctgactgctgatttcgtgtacccctacaga 531 |||||| ||||||| |||| || || ||| ||| |||||| | | | || |||||| Sbjct: 520 gctggtatcatgaaatgcaaatatgttgagttgaatgctgaatatattcagccttacaga 579 Query: 532 aaccagggtggattcgatatgatctgcagtggaagggacaagattgaa 579 ||||||||||| || || ||||||||||||||||| |||||||||||| Sbjct: 580 aaccagggtggttttgacatgatctgcagtggaagagacaagattgaa 627
>gb|AY093260.1| Arabidopsis thaliana similar to pyrophosphate-dependent phosphofuctokinase beta subunit (At1g12000) mRNA, complete cds Length = 1733 Score = 95.6 bits (48), Expect = 2e-16 Identities = 138/168 (82%) Strand = Plus / Plus Query: 412 tttgattacctgcaggagcgtgccaaaggcagcaccatgtatggattcaagggaggccca 471 |||||||||||||| |||||||| ||||| ||||| | || || |||||||| || ||| Sbjct: 352 tttgattacctgcaagagcgtgcgaaaggtagcacattttacgggttcaagggtggtcca 411 Query: 472 gctggtgtcatgaagggcaagtacgtcgagctgactgctgatttcgtgtacccctacaga 531 |||||| ||||||| |||| || || ||| ||| |||||| | | | || |||||| Sbjct: 412 gctggtatcatgaaatgcaaatatgttgagttgaatgctgaatatattcagccttacaga 471 Query: 532 aaccagggtggattcgatatgatctgcagtggaagggacaagattgaa 579 ||||||||||| || || ||||||||||||||||| |||||||||||| Sbjct: 472 aaccagggtggttttgacatgatctgcagtggaagagacaagattgaa 519
>gb|AY062473.1| Arabidopsis thaliana Similar to pyrophosphate-dependent phosphofuctokinase beta subunit (At1g12000; F12F1.13) mRNA, complete cds Length = 1965 Score = 95.6 bits (48), Expect = 2e-16 Identities = 138/168 (82%) Strand = Plus / Plus Query: 412 tttgattacctgcaggagcgtgccaaaggcagcaccatgtatggattcaagggaggccca 471 |||||||||||||| |||||||| ||||| ||||| | || || |||||||| || ||| Sbjct: 460 tttgattacctgcaagagcgtgcgaaaggtagcacattttacgggttcaagggtggtcca 519 Query: 472 gctggtgtcatgaagggcaagtacgtcgagctgactgctgatttcgtgtacccctacaga 531 |||||| ||||||| |||| || || ||| ||| |||||| | | | || |||||| Sbjct: 520 gctggtatcatgaaatgcaaatatgttgagttgaatgctgaatatattcagccttacaga 579 Query: 532 aaccagggtggattcgatatgatctgcagtggaagggacaagattgaa 579 ||||||||||| || || ||||||||||||||||| |||||||||||| Sbjct: 580 aaccagggtggttttgacatgatctgcagtggaagagacaagattgaa 627
>ref|NM_116642.2| Arabidopsis thaliana 6-phosphofructokinase AT4G04040 mRNA, complete cds Length = 1947 Score = 85.7 bits (43), Expect = 2e-13 Identities = 94/111 (84%) Strand = Plus / Plus Query: 469 ccagctggtgtcatgaagggcaagtacgtcgagctgactgctgatttcgtgtacccctac 528 |||||||| |||||||||| || || | ||||| ||| |||| || |||||||| || Sbjct: 463 ccagctggaatcatgaaggggaaatatattgagcttacttctgagtttgtgtacccttat 522 Query: 529 agaaaccagggtggattcgatatgatctgcagtggaagggacaagattgaa 579 ||||||||||||||||| |||||||| || |||||||| |||||||||||| Sbjct: 523 agaaaccagggtggatttgatatgatatgtagtggaagagacaagattgaa 573
>gb|AF095520.1|AF095520 Citrus X paradisi pyrophosphate-dependent phosphofructokinase beta subunit (PPi-PFKb) mRNA, complete cds Length = 2034 Score = 63.9 bits (32), Expect = 6e-07 Identities = 176/224 (78%) Strand = Plus / Plus Query: 352 atcggcgtcgtgctctcgggcggccaggcgccgggcgggcacaatgtgatctgcggcatc 411 ||||||||||| | || || || |||||||| || || ||||||||||||| || ||| Sbjct: 342 atcggcgtcgtcttgtctggaggtcaggcgccaggtggacacaatgtgatctctggaatc 401 Query: 412 tttgattacctgcaggagcgtgccaaaggcagcaccatgtatggattcaagggaggccca 471 | ||||||| ||||||| || || ||||| || |||||||||||| ||||| ||| Sbjct: 402 tatgattacttgcaggatcgcgcgaaagggagtgtactgtatggattcagaggaggtcca 461 Query: 472 gctggtgtcatgaagggcaagtacgtcgagctgactgctgatttcgtgtacccctacaga 531 ||||| |||||||| |||| ||||| || || ||| | | | | || ||||| ||| Sbjct: 462 gctggaatcatgaagtgcaaatacgttgaactaacttccaactatatttatccctataga 521 Query: 532 aaccagggtggattcgatatgatctgcagtggaagggacaagat 575 ||||||||||| || ||||||||||| ||||| || |||||||| Sbjct: 522 aaccagggtggctttgatatgatctgtagtgggagagacaagat 565
>emb|AL161499.2|ATCHRIV11 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 11 Length = 198022 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 535 cagggtggattcgatatgatctgcagtggaagggacaagattgaa 579 ||||||||||| |||||||| || |||||||| |||||||||||| Sbjct: 55282 cagggtggatttgatatgatatgtagtggaagagacaagattgaa 55326
>gb|AF075598.1|T24H24 Arabidopsis thaliana BAC T24H24 Length = 88848 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 535 cagggtggattcgatatgatctgcagtggaagggacaagattgaa 579 ||||||||||| |||||||| || |||||||| |||||||||||| Sbjct: 62153 cagggtggatttgatatgatatgtagtggaagagacaagattgaa 62109
>gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F12F1 sequence, complete sequence Length = 123386 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 535 cagggtggattcgatatgatctgcagtggaagggacaagattgaa 579 |||||||| || || ||||||||||||||||| |||||||||||| Sbjct: 61836 cagggtggttttgacatgatctgcagtggaagagacaagattgaa 61880 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 415 gattacctgcaggagcgtgccaaaggcagcaccatgtatggattcaagggaggcccagct 474 ||||||||||| |||||||| ||||| ||||| | || || |||||||| || |||||| Sbjct: 61587 gattacctgcaagagcgtgcgaaaggtagcacattttacgggttcaagggtggtccagct 61646 Query: 475 ggtgtcatgaa 485 ||| ||||||| Sbjct: 61647 ggtatcatgaa 61657
>emb|Z32850.1|RCPDPBS R.communis gene for pyrophosphate-dependent phosphofructokinase beta subunit Length = 5280 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 535 cagggtggattcgatatgatctgcagtggaagggacaagattgaa 579 |||||||| || ||||||||||||||||| || ||||| |||||| Sbjct: 1175 cagggtggttttgatatgatctgcagtgggagagacaaaattgaa 1219
>gb|AC150441.2| Medicago truncatula chromosome 2 BAC clone mth2-19l4, complete sequence Length = 120811 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 535 cagggtggattcgatatgatctgcagtggaagggacaagattgaa 579 |||||||| || || ||||| |||||||| ||||||||||||||| Sbjct: 83728 cagggtggttttgacatgatttgcagtgggagggacaagattgaa 83772
>ref|NM_196561.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0075H14.17), mRNA Length = 1125 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 84 ggcggccgcggcggtggcctcc 105 |||||||||||||||||||||| Sbjct: 678 ggcggccgcggcggtggcctcc 657
>gb|AE007269.1| Sinorhizobium meliloti 1021 plasmid pSymA section 75 of 121 of the complete plasmid sequence Length = 8430 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 341 agccgctcaagatcggcgtcgt 362 |||||||||||||||||||||| Sbjct: 1075 agccgctcaagatcggcgtcgt 1096
>ref|XM_743809.1| Aspergillus fumigatus Af293 UbiE/COQ5 methyltransferase (Afu7g06080) partial mRNA Length = 831 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 192 cccctccgtcctccgctcccac 213 |||||||||||||||||||||| Sbjct: 42 cccctccgtcctccgctcccac 63
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 84 ggcggccgcggcggtggcctcc 105 |||||||||||||||||||||| Sbjct: 14512328 ggcggccgcggcggtggcctcc 14512307
>gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0075H14, complete sequence Length = 155420 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 84 ggcggccgcggcggtggcctcc 105 |||||||||||||||||||||| Sbjct: 126691 ggcggccgcggcggtggcctcc 126670
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 84 ggcggccgcggcggtggcctcc 105 |||||||||||||||||||||| Sbjct: 14520570 ggcggccgcggcggtggcctcc 14520549
>ref|XM_479456.1| Oryza sativa (japonica cultivar-group), mRNA Length = 929 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 catggcggccgcggcggtggc 101 ||||||||||||||||||||| Sbjct: 69 catggcggccgcggcggtggc 49
>ref|XM_506556.1| PREDICTED Oryza sativa (japonica cultivar-group), P0470D12.109 mRNA Length = 931 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 catggcggccgcggcggtggc 101 ||||||||||||||||||||| Sbjct: 71 catggcggccgcggcggtggc 51
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes Length = 37000 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 acgggggcgcggcgcccgtgc 127 ||||||||||||||||||||| Sbjct: 18956 acgggggcgcggcgcccgtgc 18976
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 acgggggcgcggcgcccgtgc 127 ||||||||||||||||||||| Sbjct: 49756 acgggggcgcggcgcccgtgc 49776
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 304 gcctccgtcgtgccgaccgcc 324 ||||||||||||||||||||| Sbjct: 296077 gcctccgtcgtgccgaccgcc 296097
>gb|BC018090.1| Homo sapiens zinc finger protein 641, mRNA (cDNA clone MGC:27116 IMAGE:4791876), complete cds Length = 1832 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 184 ctgcccctcccctccgtcctccgct 208 |||||||||||||||| |||||||| Sbjct: 58 ctgcccctcccctccgccctccgct 34
>gb|AC024257.25| Homo sapiens 12 BAC RP11-370I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184125 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 ctgcccctcccctccgtcctccgct 208 |||||||||||||||| |||||||| Sbjct: 155599 ctgcccctcccctccgccctccgct 155623
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 catggcggccgcggcggtggc 101 ||||||||||||||||||||| Sbjct: 28299065 catggcggccgcggcggtggc 28299045 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 catggcggccgcggcggtggcctc 104 |||||||| ||||||||||||||| Sbjct: 21411677 catggcggtcgcggcggtggcctc 21411700
>gb|AC010336.8| Homo sapiens chromosome 19 clone CTD-3193O13, complete sequence Length = 160770 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 187 cccctcccctccgtcctccgctccc 211 |||||||||||| |||||||||||| Sbjct: 4840 cccctcccctccctcctccgctccc 4816
>gb|AC008812.7|AC008812 Homo sapiens chromosome 19 clone CTD-2102F19, complete sequence Length = 143619 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 187 cccctcccctccgtcctccgctccc 211 |||||||||||| |||||||||||| Sbjct: 126739 cccctcccctccctcctccgctccc 126715
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 catggcggccgcggcggtggc 101 ||||||||||||||||||||| Sbjct: 24628 catggcggccgcggcggtggc 24608
>emb|X94677.1|BHV1ULGNS Bovine herpesvirus type 1 genes for UL[27,28,29,30,31] Length = 10500 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 acgggggcgcggcgcccgtgc 127 ||||||||||||||||||||| Sbjct: 4680 acgggggcgcggcgcccgtgc 4700
>dbj|AK102921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114C10, full insert sequence Length = 931 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 catggcggccgcggcggtggc 101 ||||||||||||||||||||| Sbjct: 71 catggcggccgcggcggtggc 51
>dbj|AK060349.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-F05, full insert sequence Length = 929 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 catggcggccgcggcggtggc 101 ||||||||||||||||||||| Sbjct: 69 catggcggccgcggcggtggc 49
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 323 ccgagccggtcgcgtcgaagccgct 347 |||||||||||||| |||||||||| Sbjct: 2901983 ccgagccggtcgcgccgaagccgct 2902007 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gccggtcgcgtcgaagccgc 346 |||||||||||||||||||| Sbjct: 2922132 gccggtcgcgtcgaagccgc 2922113
>ref|NM_111209.2| Arabidopsis thaliana protein binding / serine-type endopeptidase/ serine-type peptidase/ trypsin AT3G03380 mRNA, complete cds Length = 3602 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 343 ccgctcaagatcggcgtcgtgctctcgg 370 ||||| ||||| |||||||||||||||| Sbjct: 218 ccgctgaagattggcgtcgtgctctcgg 245
>ref|XM_478609.1| Oryza sativa (japonica cultivar-group), mRNA Length = 597 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 catggcggccgcggcggtggcctc 104 |||||||| ||||||||||||||| Sbjct: 36 catggcggtcgcggcggtggcctc 59
>gb|AC124326.11| Mus musculus chromosome 16, clone RP24-463I7, complete sequence Length = 168107 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 atgatctgcagtggaaggga 569 |||||||||||||||||||| Sbjct: 32394 atgatctgcagtggaaggga 32375
>ref|XM_589538.2| PREDICTED: Bos taurus similar to CG4036-PA, transcript variant 1 (LOC512094), mRNA Length = 2016 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 atggcggccgcggcggtggc 101 |||||||||||||||||||| Sbjct: 1 atggcggccgcggcggtggc 20
>ref|XM_364800.1| Magnaporthe grisea 70-15 hypothetical protein (MG09645.4) partial mRNA Length = 6354 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 gggcggccaggcgccgggcg 388 |||||||||||||||||||| Sbjct: 5578 gggcggccaggcgccgggcg 5559
>emb|CR956431.10| Pig DNA sequence from clone PigE-60M9 on chromosome 7, complete sequence Length = 206517 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 gcacatgctgcccctcccct 196 |||||||||||||||||||| Sbjct: 160099 gcacatgctgcccctcccct 160118
>emb|CR956369.6| Pig DNA sequence from clone PigI-416G4 on chromosome 7, complete sequence Length = 140162 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 gcacatgctgcccctcccct 196 |||||||||||||||||||| Sbjct: 48221 gcacatgctgcccctcccct 48240
>gb|AC009895.4|ATAC009895 Arabidopsis thaliana chromosome III BAC T21P5 genomic sequence, complete sequence Length = 82289 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 343 ccgctcaagatcggcgtcgtgctctcgg 370 ||||| ||||| |||||||||||||||| Sbjct: 60281 ccgctgaagattggcgtcgtgctctcgg 60254
>emb|CR645276.2|CNS0EWV6 Tetraodon nigroviridis full-length cDNA Length = 1178 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 gcccctcccctccgtcctcc 205 |||||||||||||||||||| Sbjct: 458 gcccctcccctccgtcctcc 439
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 cgggcggccaggcgccgggcgggc 391 ||||||| |||||||||||||||| Sbjct: 232908 cgggcgggcaggcgccgggcgggc 232885
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 cttcaccctcgccgacgggc 232 |||||||||||||||||||| Sbjct: 1549713 cttcaccctcgccgacgggc 1549732
>emb|CR457442.11| Zebrafish DNA sequence from clone CH211-228G24 in linkage group 14, complete sequence Length = 132912 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 cgtgtacccctacagaaacc 535 |||||||||||||||||||| Sbjct: 5193 cgtgtacccctacagaaacc 5174
>gb|AE005754.1| Caulobacter crescentus CB15 section 80 of 359 of the complete genome Length = 13654 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 ggcccgccagcaccgcagcg 249 |||||||||||||||||||| Sbjct: 2966 ggcccgccagcaccgcagcg 2985
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 tgcaggagcgtgccaaaggc 441 |||||||||||||||||||| Sbjct: 3177183 tgcaggagcgtgccaaaggc 3177202
>gb|AY078951.1| Arabidopsis thaliana AT3g03380/T21P5_20 mRNA, complete cds Length = 3604 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 343 ccgctcaagatcggcgtcgtgctctcgg 370 ||||| ||||| |||||||||||||||| Sbjct: 218 ccgctgaagattggcgtcgtgctctcgg 245
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 tgtcatgaagggcaagtacg 496 |||||||||||||||||||| Sbjct: 3201998 tgtcatgaagggcaagtacg 3202017
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 tggcggccgcggcggtggcc 102 |||||||||||||||||||| Sbjct: 5408437 tggcggccgcggcggtggcc 5408456
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 gcccgggcgcctcgcgtccg 145 |||||||||||||||||||| Sbjct: 816415 gcccgggcgcctcgcgtccg 816434
>emb|CR386426.1| Gallus gallus finished cDNA, clone ChEST235h1 Length = 635 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ggcggccaggcgccgggcgg 389 |||||||||||||||||||| Sbjct: 533 ggcggccaggcgccgggcgg 514
>gb|AF375824.1|AF375824 Chlamydomonas reinhardtii mating type protein Mat3p (mat3) gene, complete cds Length = 7056 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 tggcggccgcggcggtggcc 102 |||||||||||||||||||| Sbjct: 5535 tggcggccgcggcggtggcc 5554
>emb|BX842421.1|CNS0A7UF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH54ZA10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2544 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 343 ccgctcaagatcggcgtcgtgctctcgg 370 ||||| ||||| |||||||||||||||| Sbjct: 218 ccgctgaagattggcgtcgtgctctcgg 245
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 atggcggccgcggcggtggc 101 |||||||||||||||||||| Sbjct: 8641347 atggcggccgcggcggtggc 8641366
>gb|BT002727.1| Arabidopsis thaliana At3g03380/T21P5_20 gene, complete cds Length = 3294 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 343 ccgctcaagatcggcgtcgtgctctcgg 370 ||||| ||||| |||||||||||||||| Sbjct: 113 ccgctgaagattggcgtcgtgctctcgg 140
>gb|AY588243.1| Chlamydomonas reinhardtii putative ammonium transporter (Amt1-5b) mRNA, partial cds Length = 1776 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 catggcggccgcggcggtgg 100 |||||||||||||||||||| Sbjct: 43 catggcggccgcggcggtgg 24
>gb|AY542492.2| Chlamydomonas reinhardtii putative ammonium transporter (Amt1-5a) mRNA, partial cds Length = 2142 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 catggcggccgcggcggtgg 100 |||||||||||||||||||| Sbjct: 409 catggcggccgcggcggtgg 390
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gcgtcgtgctctcgggcggc 375 |||||||||||||||||||| Sbjct: 7267720 gcgtcgtgctctcgggcggc 7267701
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gccccgatgagatcgccaag 273 |||||||||||||||||||| Sbjct: 1705741 gccccgatgagatcgccaag 1705722
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 tggcggccgcggcggtggcc 102 |||||||||||||||||||| Sbjct: 1752098 tggcggccgcggcggtggcc 1752117
>dbj|AP005156.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1729_E01 Length = 155527 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 catggcggccgcggcggtggcctc 104 |||||||| ||||||||||||||| Sbjct: 55733 catggcggtcgcggcggtggcctc 55756
>gb|AF080073.1|SMPCAS2 Sinorhizobium meliloti putative propionyl-CoA carboxylase alpha subunit homolog (pccA) gene, partial cds; methylmalonyl-CoA mutase (bhbA) gene, complete cds; and GNTR homolog (gntR) gene, partial cds Length = 3148 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 cttcaccctcgccgacgggc 232 |||||||||||||||||||| Sbjct: 1146 cttcaccctcgccgacgggc 1165
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gcgtcgtgctctcgggcggc 375 |||||||||||||||||||| Sbjct: 3457974 gcgtcgtgctctcgggcggc 3457955 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ggccgcggcggtggcctcca 106 |||||||||||||||||||| Sbjct: 1579810 ggccgcggcggtggcctcca 1579829
>dbj|AP004500.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT05P21, TM0032, complete sequence Length = 106632 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cccctcccctccgtcctccg 206 |||||||||||||||||||| Sbjct: 21652 cccctcccctccgtcctccg 21633
>gb|M57300.1|DROADHM Drosophila mettleri alcohol dehydrogenase gene, complete cds, and alcohol dehydrogenase pseudogene, complete Length = 4616 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 459 caagggaggcccagctggtgtcat 482 |||||||||||||| ||||||||| Sbjct: 3418 caagggaggcccaggtggtgtcat 3441 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 459 caagggaggcccagctggtgtcat 482 |||||||||||||| ||||||||| Sbjct: 1293 caagggaggcccaggtggtgtcat 1316 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,058,765 Number of Sequences: 3902068 Number of extensions: 4058765 Number of successful extensions: 93359 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91443 Number of HSP's gapped (non-prelim): 1914 length of query: 613 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 590 effective length of database: 17,143,297,704 effective search space: 10114545645360 effective search space used: 10114545645360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)