ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart30d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HY5_LYCES (Q9SM50) Transcription factor HY5 (LeHY5) (tHY5) 30 5.7
2PRD16_HUMAN (Q9HAZ2) PR domain zinc finger protein 16 (PR domain... 29 9.7

>HY5_LYCES (Q9SM50) Transcription factor HY5 (LeHY5) (tHY5)|
          Length = 158

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 410 NNLKEGGAESDEEIRRVPEM 469
           + LKEG  ESD+EIRRVPEM
Sbjct: 28  HELKEG-MESDDEIRRVPEM 46



to top

>PRD16_HUMAN (Q9HAZ2) PR domain zinc finger protein 16 (PR domain-containing|
           protein 16) (Transcription factor MEL1)
          Length = 1276

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = +2

Query: 68  HAAGLPFSLLPVPFPCLPPSRPICICVFFPPS 163
           H   LPFS  P  FP L P  P      FPPS
Sbjct: 494 HPGSLPFSTAPPTFPALTPGFP----GIFPPS 521


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,248,221
Number of Sequences: 219361
Number of extensions: 333674
Number of successful extensions: 954
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top