ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart29e05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 472 bits (238), Expect = e-130 Identities = 352/390 (90%) Strand = Plus / Minus Query: 161 agcgggaaaccaagcagcaaatcttggcgagcatcccgccgcactggcaggagaaccccg 220 ||||||| || |||||||| ||| |||| ||||||||||||||||||||||||||||| | Sbjct: 7652228 agcgggagacgaagcagcagatcctggccagcatcccgccgcactggcaggagaacccgg 7652169 Query: 221 tgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccagaccg 280 || ||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||| Sbjct: 7652168 tgctgttcctgacgtcgccgtcgggcaagtacacggcgtacttcctgcgcagccagaccg 7652109 Query: 281 tgccgggcgccggcggcctcggagccgacttctgctacgtcgagattctcgacaccaccg 340 ||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||| | | Sbjct: 7652108 cgccgggcgccggcggcctcggcgccgacttctgctacgtggaggtgctcgacacctcgg 7652049 Query: 341 agccgggcgcggaggggcggagcgtgtgggagtcggagtgcttggcggtgagcaccgtga 400 | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 7652048 atcccggcgcggaggggcggagcgtgtgggagtcggagtgcctggcggtgagcaccgtga 7651989 Query: 401 acacctgcgcgctcgtgttctcgtggaaagggctggaggtgttcgacgggagcaactctg 460 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 7651988 acacgtgctcgctcgtgttctcgtggaaagggctggaggtgttcgacgggagcaactcgg 7651929 Query: 461 tgtggcacacacacgacacggagtcagtcgacaacaacttcctcaaaaccctgcagctcg 520 |||||||||| ||||||||| |||| | | | | ||||||||| | || ||| |||| | Sbjct: 7651928 tgtggcacacccacgacacgcagtccgacagccagaacttcctcgagacgctggagctgg 7651869 Query: 521 tggacgagggtgacatgcgcatcctcgaca 550 |||||||||| ||||||||||||||||||| Sbjct: 7651868 tggacgagggcgacatgcgcatcctcgaca 7651839
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0096L14, from chromosome 3, complete sequence Length = 131142 Score = 472 bits (238), Expect = e-130 Identities = 352/390 (90%) Strand = Plus / Plus Query: 161 agcgggaaaccaagcagcaaatcttggcgagcatcccgccgcactggcaggagaaccccg 220 ||||||| || |||||||| ||| |||| ||||||||||||||||||||||||||||| | Sbjct: 63062 agcgggagacgaagcagcagatcctggccagcatcccgccgcactggcaggagaacccgg 63121 Query: 221 tgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccagaccg 280 || ||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||| Sbjct: 63122 tgctgttcctgacgtcgccgtcgggcaagtacacggcgtacttcctgcgcagccagaccg 63181 Query: 281 tgccgggcgccggcggcctcggagccgacttctgctacgtcgagattctcgacaccaccg 340 ||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||| | | Sbjct: 63182 cgccgggcgccggcggcctcggcgccgacttctgctacgtggaggtgctcgacacctcgg 63241 Query: 341 agccgggcgcggaggggcggagcgtgtgggagtcggagtgcttggcggtgagcaccgtga 400 | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 63242 atcccggcgcggaggggcggagcgtgtgggagtcggagtgcctggcggtgagcaccgtga 63301 Query: 401 acacctgcgcgctcgtgttctcgtggaaagggctggaggtgttcgacgggagcaactctg 460 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 63302 acacgtgctcgctcgtgttctcgtggaaagggctggaggtgttcgacgggagcaactcgg 63361 Query: 461 tgtggcacacacacgacacggagtcagtcgacaacaacttcctcaaaaccctgcagctcg 520 |||||||||| ||||||||| |||| | | | | ||||||||| | || ||| |||| | Sbjct: 63362 tgtggcacacccacgacacgcagtccgacagccagaacttcctcgagacgctggagctgg 63421 Query: 521 tggacgagggtgacatgcgcatcctcgaca 550 |||||||||| ||||||||||||||||||| Sbjct: 63422 tggacgagggcgacatgcgcatcctcgaca 63451
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 472 bits (238), Expect = e-130 Identities = 352/390 (90%) Strand = Plus / Minus Query: 161 agcgggaaaccaagcagcaaatcttggcgagcatcccgccgcactggcaggagaaccccg 220 ||||||| || |||||||| ||| |||| ||||||||||||||||||||||||||||| | Sbjct: 7650063 agcgggagacgaagcagcagatcctggccagcatcccgccgcactggcaggagaacccgg 7650004 Query: 221 tgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccagaccg 280 || ||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||| Sbjct: 7650003 tgctgttcctgacgtcgccgtcgggcaagtacacggcgtacttcctgcgcagccagaccg 7649944 Query: 281 tgccgggcgccggcggcctcggagccgacttctgctacgtcgagattctcgacaccaccg 340 ||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||| | | Sbjct: 7649943 cgccgggcgccggcggcctcggcgccgacttctgctacgtggaggtgctcgacacctcgg 7649884 Query: 341 agccgggcgcggaggggcggagcgtgtgggagtcggagtgcttggcggtgagcaccgtga 400 | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 7649883 atcccggcgcggaggggcggagcgtgtgggagtcggagtgcctggcggtgagcaccgtga 7649824 Query: 401 acacctgcgcgctcgtgttctcgtggaaagggctggaggtgttcgacgggagcaactctg 460 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 7649823 acacgtgctcgctcgtgttctcgtggaaagggctggaggtgttcgacgggagcaactcgg 7649764 Query: 461 tgtggcacacacacgacacggagtcagtcgacaacaacttcctcaaaaccctgcagctcg 520 |||||||||| ||||||||| |||| | | | | ||||||||| | || ||| |||| | Sbjct: 7649763 tgtggcacacccacgacacgcagtccgacagccagaacttcctcgagacgctggagctgg 7649704 Query: 521 tggacgagggtgacatgcgcatcctcgaca 550 |||||||||| ||||||||||||||||||| Sbjct: 7649703 tggacgagggcgacatgcgcatcctcgaca 7649674
>dbj|AK064707.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A07, full insert sequence Length = 1269 Score = 472 bits (238), Expect = e-130 Identities = 352/390 (90%) Strand = Plus / Plus Query: 161 agcgggaaaccaagcagcaaatcttggcgagcatcccgccgcactggcaggagaaccccg 220 ||||||| || |||||||| ||| |||| ||||||||||||||||||||||||||||| | Sbjct: 208 agcgggagacgaagcagcagatcctggccagcatcccgccgcactggcaggagaacccgg 267 Query: 221 tgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccagaccg 280 || ||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||| Sbjct: 268 tgctgttcctgacgtcgccgtcgggcaagtacacggcgtacttcctgcgcagccagaccg 327 Query: 281 tgccgggcgccggcggcctcggagccgacttctgctacgtcgagattctcgacaccaccg 340 ||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||| | | Sbjct: 328 cgccgggcgccggcggcctcggcgccgacttctgctacgtggaggtgctcgacacctcgg 387 Query: 341 agccgggcgcggaggggcggagcgtgtgggagtcggagtgcttggcggtgagcaccgtga 400 | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 388 atcccggcgcggaggggcggagcgtgtgggagtcggagtgcctggcggtgagcaccgtga 447 Query: 401 acacctgcgcgctcgtgttctcgtggaaagggctggaggtgttcgacgggagcaactctg 460 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 448 acacgtgctcgctcgtgttctcgtggaaagggctggaggtgttcgacgggagcaactcgg 507 Query: 461 tgtggcacacacacgacacggagtcagtcgacaacaacttcctcaaaaccctgcagctcg 520 |||||||||| ||||||||| |||| | | | | ||||||||| | || ||| |||| | Sbjct: 508 tgtggcacacccacgacacgcagtccgacagccagaacttcctcgagacgctggagctgg 567 Query: 521 tggacgagggtgacatgcgcatcctcgaca 550 |||||||||| ||||||||||||||||||| Sbjct: 568 tggacgagggcgacatgcgcatcctcgaca 597
>ref|NM_194925.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNAa0034B05.10), mRNA Length = 1125 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 217 cccgtgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccag 276 |||||| ||||||| || |||||||||||||||||||||||| ||||| ||||| || Sbjct: 157 cccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctcgcac 216 Query: 277 accgtgccgggcgccggcggcctcggagccgacttctgctacgtcgag 324 ||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 217 accgtccccggcgccggcgggctcggcgccgacttctgctacgtcgag 264 Score = 83.8 bits (42), Expect = 6e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 360 gagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacacctgcgcgctcgtgtt 419 |||||||||||||||||||||| | |||||||||| |||||||| ||| | || | || Sbjct: 321 gagcgtgtgggagtcggagtgccggccggtgagcacggtgaacacgtgcactctgctctt 380 Query: 420 ctcgtggaaagggctggaggtgttcgacgg 449 ||||||| | |||||||||||||||||||| Sbjct: 381 ctcgtggcacgggctggaggtgttcgacgg 410 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 515 agctcgtggacgagggtgacatgcgcatcctcgaca 550 ||||||| ||||| || ||||||||||||| ||||| Sbjct: 473 agctcgtcgacgacggcgacatgcgcatccgcgaca 508
>gb|AC091724.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0004E08, complete sequence Length = 158294 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 217 cccgtgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccag 276 |||||| ||||||| || |||||||||||||||||||||||| ||||| ||||| || Sbjct: 33196 cccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctcgcac 33255 Query: 277 accgtgccgggcgccggcggcctcggagccgacttctgctacgtcgag 324 ||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 33256 accgtccccggcgccggcgggctcggcgccgacttctgctacgtcgag 33303 Score = 83.8 bits (42), Expect = 6e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 360 gagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacacctgcgcgctcgtgtt 419 |||||||||||||||||||||| | |||||||||| |||||||| ||| | || | || Sbjct: 33360 gagcgtgtgggagtcggagtgccggccggtgagcacggtgaacacgtgcactctgctctt 33419 Query: 420 ctcgtggaaagggctggaggtgttcgacgg 449 ||||||| | |||||||||||||||||||| Sbjct: 33420 ctcgtggcacgggctggaggtgttcgacgg 33449 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 515 agctcgtggacgagggtgacatgcgcatcctcgaca 550 ||||||| ||||| || ||||||||||||| ||||| Sbjct: 33512 agctcgtcgacgacggcgacatgcgcatccgcgaca 33547
>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0034B05, complete sequence Length = 125655 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 217 cccgtgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccag 276 |||||| ||||||| || |||||||||||||||||||||||| ||||| ||||| || Sbjct: 98851 cccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctcgcac 98910 Query: 277 accgtgccgggcgccggcggcctcggagccgacttctgctacgtcgag 324 ||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 98911 accgtccccggcgccggcgggctcggcgccgacttctgctacgtcgag 98958 Score = 83.8 bits (42), Expect = 6e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 360 gagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacacctgcgcgctcgtgtt 419 |||||||||||||||||||||| | |||||||||| |||||||| ||| | || | || Sbjct: 99015 gagcgtgtgggagtcggagtgccggccggtgagcacggtgaacacgtgcactctgctctt 99074 Query: 420 ctcgtggaaagggctggaggtgttcgacgg 449 ||||||| | |||||||||||||||||||| Sbjct: 99075 ctcgtggcacgggctggaggtgttcgacgg 99104 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 515 agctcgtggacgagggtgacatgcgcatcctcgaca 550 ||||||| ||||| || ||||||||||||| ||||| Sbjct: 99167 agctcgtcgacgacggcgacatgcgcatccgcgaca 99202
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 217 cccgtgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccag 276 |||||| ||||||| || |||||||||||||||||||||||| ||||| ||||| || Sbjct: 3442067 cccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctcgcac 3442126 Query: 277 accgtgccgggcgccggcggcctcggagccgacttctgctacgtcgag 324 ||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 3442127 accgtccccggcgccggcgggctcggcgccgacttctgctacgtcgag 3442174 Score = 83.8 bits (42), Expect = 6e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 360 gagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacacctgcgcgctcgtgtt 419 |||||||||||||||||||||| | |||||||||| |||||||| ||| | || | || Sbjct: 3442231 gagcgtgtgggagtcggagtgccggccggtgagcacggtgaacacgtgcactctgctctt 3442290 Query: 420 ctcgtggaaagggctggaggtgttcgacgg 449 ||||||| | |||||||||||||||||||| Sbjct: 3442291 ctcgtggcacgggctggaggtgttcgacgg 3442320 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 515 agctcgtggacgagggtgacatgcgcatcctcgaca 550 ||||||| ||||| || ||||||||||||| ||||| Sbjct: 3442383 agctcgtcgacgacggcgacatgcgcatccgcgaca 3442418
>dbj|AK108770.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H05, full insert sequence Length = 1436 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 217 cccgtgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccag 276 |||||| ||||||| || |||||||||||||||||||||||| ||||| ||||| || Sbjct: 231 cccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctcgcac 290 Query: 277 accgtgccgggcgccggcggcctcggagccgacttctgctacgtcgag 324 ||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 291 accgtccccggcgccggcgggctcggcgccgacttctgctacgtcgag 338 Score = 83.8 bits (42), Expect = 6e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 360 gagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacacctgcgcgctcgtgtt 419 |||||||||||||||||||||| | |||||||||| |||||||| ||| | || | || Sbjct: 395 gagcgtgtgggagtcggagtgccggccggtgagcacggtgaacacgtgcactctgctctt 454 Query: 420 ctcgtggaaagggctggaggtgttcgacgg 449 ||||||| | |||||||||||||||||||| Sbjct: 455 ctcgtggcacgggctggaggtgttcgacgg 484 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 515 agctcgtggacgagggtgacatgcgcatcctcgaca 550 ||||||| ||||| || ||||||||||||| ||||| Sbjct: 547 agctcgtcgacgacggcgacatgcgcatccgcgaca 582
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 217 cccgtgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccag 276 |||||| ||||||| || |||||||||||||||||||||||| ||||| ||||| || Sbjct: 3441988 cccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctcgcac 3442047 Query: 277 accgtgccgggcgccggcggcctcggagccgacttctgctacgtcgag 324 ||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 3442048 accgtccccggcgccggcgggctcggcgccgacttctgctacgtcgag 3442095 Score = 83.8 bits (42), Expect = 6e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 360 gagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacacctgcgcgctcgtgtt 419 |||||||||||||||||||||| | |||||||||| |||||||| ||| | || | || Sbjct: 3442152 gagcgtgtgggagtcggagtgccggccggtgagcacggtgaacacgtgcactctgctctt 3442211 Query: 420 ctcgtggaaagggctggaggtgttcgacgg 449 ||||||| | |||||||||||||||||||| Sbjct: 3442212 ctcgtggcacgggctggaggtgttcgacgg 3442241 Score = 40.1 bits (20), Expect = 7.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 515 agctcgtggacgagggtgacatgcgcatcctcgaca 550 ||||||| ||||| || ||||||||||||| ||||| Sbjct: 3442304 agctcgtcgacgacggcgacatgcgcatccgcgaca 3442339
>gb|AC107837.11| Mus musculus chromosome 1, clone RP23-272H13, complete sequence Length = 189415 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 418 ttctcgtggaaagggctggagg 439 |||||||||||||||||||||| Sbjct: 150888 ttctcgtggaaagggctggagg 150909
>gb|AC124108.15| Mus musculus chromosome 1, clone RP24-340N18, complete sequence Length = 178775 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 418 ttctcgtggaaagggctggagg 439 |||||||||||||||||||||| Sbjct: 167897 ttctcgtggaaagggctggagg 167876
>gb|AC163902.2| Mus musculus BAC clone RP23-479B18 from chromosome 17, complete sequence Length = 190411 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 aactctgtgtggcacacacac 474 ||||||||||||||||||||| Sbjct: 31157 aactctgtgtggcacacacac 31137
>gb|AC079441.37| Mus musculus strain C57BL/6J clone rp23-349b16 map 17, complete sequence Length = 223005 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 aactctgtgtggcacacacac 474 ||||||||||||||||||||| Sbjct: 51950 aactctgtgtggcacacacac 51970
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 agcgtgtgggagtcggagtgc 381 ||||||||||||||||||||| Sbjct: 20753473 agcgtgtgggagtcggagtgc 20753493 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 235 tcgccgtccggcaagtacgcggcg 258 ||||||||||||||| |||||||| Sbjct: 19105371 tcgccgtccggcaagaacgcggcg 19105394
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 agcgtgtgggagtcggagtgc 381 ||||||||||||||||||||| Sbjct: 28502 agcgtgtgggagtcggagtgc 28522
>emb|CT025871.10| Mouse DNA sequence from clone RP24-324L15 on chromosome 17, complete sequence Length = 154761 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 aactctgtgtggcacacacac 474 ||||||||||||||||||||| Sbjct: 69953 aactctgtgtggcacacacac 69933
>ref|XM_526649.1| PREDICTED: Pan troglodytes similar to cytochrome P450, family 2, subfamily U, polypeptide 1; cytochrome P450 P450TEC (LOC471267), mRNA Length = 1533 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ccgggcgccggcggcctcgg 302 |||||||||||||||||||| Sbjct: 153 ccgggcgccggcggcctcgg 134
>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0019D02, complete sequence Length = 154692 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 235 tcgccgtccggcaagtacgcggcg 258 ||||||||||||||| |||||||| Sbjct: 150656 tcgccgtccggcaagaacgcggcg 150679
>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBb0004A05, complete sequence Length = 157913 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 235 tcgccgtccggcaagtacgcggcg 258 ||||||||||||||| |||||||| Sbjct: 35330 tcgccgtccggcaagaacgcggcg 35353
>gb|AC093351.8| Mus musculus chromosome 7, clone RP23-16L19, complete sequence Length = 239688 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 tcctcaaaaccctgcagctc 519 |||||||||||||||||||| Sbjct: 64121 tcctcaaaaccctgcagctc 64102
>gb|AC092241.2| Drosophila melanogaster clone BACR09F02, complete sequence Length = 178190 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 caactctgtgtggcacacac 472 |||||||||||||||||||| Sbjct: 100227 caactctgtgtggcacacac 100246
>gb|AY343323.1| Homo sapiens cytochrome P450 mRNA, complete cds Length = 3544 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ccgggcgccggcggcctcgg 302 |||||||||||||||||||| Sbjct: 36 ccgggcgccggcggcctcgg 17
>ref|NM_183075.2| Homo sapiens cytochrome P450, family 2, subfamily U, polypeptide 1 (CYP2U1), mRNA Length = 4760 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ccgggcgccggcggcctcgg 302 |||||||||||||||||||| Sbjct: 80 ccgggcgccggcggcctcgg 61
>gb|BC012027.1| Homo sapiens cytochrome P450, family 2, subfamily U, polypeptide 1, mRNA (cDNA clone IMAGE:4706746), complete cds Length = 1576 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ccgggcgccggcggcctcgg 302 |||||||||||||||||||| Sbjct: 56 ccgggcgccggcggcctcgg 37
>gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosome 10, complete sequence Length = 179668 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 accaagcagcaaatcttggc 188 |||||||||||||||||||| Sbjct: 65919 accaagcagcaaatcttggc 65900
>gb|AC091652.4| Homo sapiens BAC clone RP11-26I6 from 7, complete sequence Length = 44121 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 gtggaaagggctggaggtgt 442 |||||||||||||||||||| Sbjct: 6604 gtggaaagggctggaggtgt 6623
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 tgacgtcgccgtccggcaag 249 |||||||||||||||||||| Sbjct: 3588099 tgacgtcgccgtccggcaag 3588118
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 tgccgggcgccggcggcctc 300 |||||||||||||||||||| Sbjct: 134081 tgccgggcgccggcggcctc 134062
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gccgggcgccggcggcctcg 301 |||||||||||||||||||| Sbjct: 151137 gccgggcgccggcggcctcg 151156
>gb|AC009812.17| Homo sapiens chromosome 8, clone RP11-48B3, complete sequence Length = 155405 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tgtttgtcctcccttcccac 129 |||||||||||||||||||| Sbjct: 139119 tgtttgtcctcccttcccac 139100
>gb|AC096564.3| Homo sapiens BAC clone RP11-286E11 from 4, complete sequence Length = 163317 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 ccgggcgccggcggcctcgg 302 |||||||||||||||||||| Sbjct: 145085 ccgggcgccggcggcctcgg 145066
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 gtcgacaacaacttcctcaa 506 |||||||||||||||||||| Sbjct: 535084 gtcgacaacaacttcctcaa 535103 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 gccgggcgcggaggggcgga 361 |||||||||||||||||||| Sbjct: 277635 gccgggcgcggaggggcgga 277654
>gb|AC023855.15| Homo sapiens chromosome 17, clone RP11-546M21, complete sequence Length = 146219 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 cttcctcaaaaccctgcagc 517 |||||||||||||||||||| Sbjct: 141209 cttcctcaaaaccctgcagc 141190
>gb|AC034114.17| Homo sapiens chromosome 8, clone RP11-775E10, complete sequence Length = 154210 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 tgtttgtcctcccttcccac 129 |||||||||||||||||||| Sbjct: 125494 tgtttgtcctcccttcccac 125513
>gb|AC007993.15|AC007993 Homo sapiens chromosome 17, clone RP11-527L4, complete sequence Length = 141704 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 498 cttcctcaaaaccctgcagc 517 |||||||||||||||||||| Sbjct: 7223 cttcctcaaaaccctgcagc 7204
>gb|AC006073.1|AC006073 Drosophila melanogaster, chromosome 2L, region 32D3-32E2, P1 clones DS05055 and DS02287, complete sequence Length = 94440 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 caactctgtgtggcacacac 472 |||||||||||||||||||| Sbjct: 25244 caactctgtgtggcacacac 25263
>gb|AE003631.4| Drosophila melanogaster chromosome 2L, section 40 of 83 of the complete sequence Length = 256684 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 caactctgtgtggcacacac 472 |||||||||||||||||||| Sbjct: 145062 caactctgtgtggcacacac 145081
>gb|AC133585.11| Mus musculus chromosome 14, clone RP24-456G16, complete sequence Length = 174807 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tgccatgtgcctcttgctgg 109 |||||||||||||||||||| Sbjct: 82321 tgccatgtgcctcttgctgg 82340 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,516,227 Number of Sequences: 3902068 Number of extensions: 3516227 Number of successful extensions: 67457 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67112 Number of HSP's gapped (non-prelim): 341 length of query: 550 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 527 effective length of database: 17,143,297,704 effective search space: 9034517890008 effective search space used: 9034517890008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
