ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart28f10 |
|---|---|
| Clone Library Name | barley_pub |
>GPMI_MYCMO (Q6KHV9) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (iPGM) Length = 510 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +2 Query: 155 KSRHDKFLYADEDELHVTQDRNGSSPSARWTVEPV 259 K+ H F+ AD +T+D NG +P+ + T PV Sbjct: 429 KTNHTLFITADHGNAEITEDENG-NPATKHTTSPV 462
>FSCN1_HUMAN (Q16658) Fascin (Singed-like protein) (55 kDa actin bundling| protein) (p55) Length = 492 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Frame = +2 Query: 167 DKFLYADEDELHVTQDRNGSSPSARWTVEPVPHAPG--AVRLRGRYGRYLAASTE 325 +K+L A+ V + WT+E P G AV LR GRYLAA + Sbjct: 20 NKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAADKD 74
>CSMD1_MOUSE (Q923L3) CUB and sushi domain-containing protein 1 precursor (CUB and| sushi multiple domains protein 1) Length = 3564 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/61 (32%), Positives = 30/61 (49%) Frame = +2 Query: 131 AHAKAVRLKSRHDKFLYADEDELHVTQDRNGSSPSARWTVEPVPHAPGAVRLRGRYGRYL 310 +H K V++ H L + D L +T+D + S P AR T +PH A G +G + Sbjct: 963 SHGKGVQMNF-HTFHLESSHDYLLITEDGSFSEPVARLTGSVLPHTIKA----GLFGNFT 1017 Query: 311 A 313 A Sbjct: 1018 A 1018
>FSCN1_MOUSE (Q61553) Fascin (Singed-like protein)| Length = 492 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%) Frame = +2 Query: 137 AKAVRLK----SRHDKFLYADEDELHVTQDRNGSSPSARWTVEPVPHAPG--AVRLRGRY 298 A+AV+++ S +K+L A+ V + WT+E P G AV LR Sbjct: 6 AEAVQIQFGLISCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRTHL 65 Query: 299 GRYLAASTE 325 GRYLAA + Sbjct: 66 GRYLAADKD 74
>CCKN_STRCA (Q9PU29) Cholecystokinins precursor (CCK) [Contains:| Cholecystokinin 70 (CCK70); Cholecystokinin 8 (CCK8); Cholecystokinin 7 (CCK7)] Length = 130 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +2 Query: 176 LYADEDELHVTQDRNGSSPSARWTVEPVPHAPGAVRLRGRYGRYLAASTEPFLLGMTGR 352 L A+ ++ R+ +PS+ ++PVP G++ R G LA + G TGR Sbjct: 32 LAAELEQSLTEHHRHVRAPSSAGPLKPVPRLDGSIDQRANIGALLAKYLQQARKGPTGR 90
>PFA4_CRYNE (Q5KLN1) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Protein fatty| acyltransferase 4) Length = 456 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -2 Query: 124 LHPRRRRWAGGWLSTPGGGLSSICGM 47 L PR RR + GW PGGG ++ GM Sbjct: 385 LIPRVRRGSEGWEVAPGGGWNAYSGM 410
>POLG_TBEVS (P07720) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3412 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 160 ALEPHRLGVREQLHPRRRRWAGGWLSTP 77 AL P+R V E LH + +W GG + TP Sbjct: 2694 ALAPYRPEVTEALHRFQLQWGGGLVRTP 2721
>FASC_XENLA (Q91837) Fascin| Length = 483 Score = 28.9 bits (63), Expect = 3.0 Identities = 14/54 (25%), Positives = 25/54 (46%) Frame = +2 Query: 164 HDKFLYADEDELHVTQDRNGSSPSARWTVEPVPHAPGAVRLRGRYGRYLAASTE 325 ++K+L A+ + + W++EP AV LR GR+L+A + Sbjct: 14 NNKYLTAEAFGFKINASASSLKKKQVWSLEPAGDDTSAVLLRSHLGRFLSADKD 67
>SRBP1_CRIGR (Q60416) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) Length = 1133 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -2 Query: 121 HPRRRRWAGGWLSTPGGGLSSICGM 47 H +R W G WL+ GGL CG+ Sbjct: 622 HLLQRLWVGRWLAGRAGGLRRDCGL 646
>CSMD1_HUMAN (Q96PZ7) CUB and sushi domain-containing protein 1 precursor (CUB and| sushi multiple domains protein 1) Length = 3565 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/61 (32%), Positives = 30/61 (49%) Frame = +2 Query: 131 AHAKAVRLKSRHDKFLYADEDELHVTQDRNGSSPSARWTVEPVPHAPGAVRLRGRYGRYL 310 +H K V++ H L + D L +T+D + S P AR T +PH A G +G + Sbjct: 964 SHGKGVQMIF-HTFHLESSHDYLLITEDGSFSEPVARLTGSVLPHTIKA----GLFGNFT 1018 Query: 311 A 313 A Sbjct: 1019 A 1019
>CCKN_CHICK (Q9PU41) Cholecystokinins precursor (CCK) [Contains:| Cholecystokinin 70 (CCK70); Cholecystokinin 8 (CCK8); Cholecystokinin 7 (CCK7)] Length = 130 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Frame = +2 Query: 164 HDKFLYADEDELHVTQD-RNGSSPSARWTVEPVPHAPGAVRLRGRYGRYLAASTEPFLLG 340 HD A E + +T+ R+ +PS+ ++P P G+ R G LA + G Sbjct: 27 HDGSPVAAELQQSLTEPHRHSRAPSSAGPLKPAPRLDGSFEQRATIGALLAKYLQQARKG 86 Query: 341 MTGR 352 TGR Sbjct: 87 STGR 90
>CPSF1_CAEEL (Q9N4C2) Probable cleavage and polyadenylation specificity factor,| 160 kDa subunit (CPSF 160 kDa subunit) Length = 1454 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +2 Query: 134 HAKAVRLKSRHDKFLYADEDELHVTQD 214 H +A+ L D FLY DEDE + Q+ Sbjct: 699 HEEAILLHGEDDDFLYGDEDETIMEQN 725
>DNAJ_HAEDU (P48208) Chaperone protein dnaJ| Length = 377 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +2 Query: 218 NGSSPSARWTVEPVPHAPGAVRLRGRYGRYLAASTEPFLLGMTGRKV 358 +G+ A VE PH GA R+R + G ++ + P G TG+K+ Sbjct: 151 HGTGAEAGTKVENCPHCHGAGRIRRQQGFFVTEAVCPSCHG-TGKKI 196
>DMA_HAEIN (P44431) DNA adenine methylase (EC 2.1.1.72)| (Deoxyadenosyl-methyltransferase) (DNA adenine methyltransferase) (M.HindIV) Length = 286 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +2 Query: 140 KAVRLKSRHDKFLYADEDELHVTQDRNGSSPSAR-WTVEPVPHAPGAVRLRGRYGRYLAA 316 ++++ K +H FL + +T + N + P+ + +EP A GAV L + RY+ A Sbjct: 7 QSLKPKLKHRPFLKWAGGKFRLTDEINKAFPNKKNCLIEPFVGA-GAVFLNSNFERYILA 65 Query: 317 STEPFLLGM 343 P L+ + Sbjct: 66 DINPDLINL 74
>PVG2_SCHPO (O14001) Pyruvylated Gal-beta-1,3-epitope synthesis protein 2| (PvGal synthesis protein 2) Length = 389 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = +2 Query: 137 AKAVRLKSRHDKFLYADEDELHVTQDRNGSSPSARWTVEPVPHAPGAVRLRGRYGRYLAA 316 +++++LK DKF+YA EL V Q + S +P+ AP ++ +Y +A Sbjct: 204 SRSLQLKKNIDKFVYA--AELSVKQFTENITSSTVEEFQPIFMAPKSL----QYDFMIAT 257 Query: 317 STEPFLLGM 343 PF+L + Sbjct: 258 PKHPFVLSL 266
>Y3407_METJA (Q60306) Hypothetical protein MJECS07| Length = 441 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = +2 Query: 128 FAHAKAVRLKSRH-----DKFLYADEDELHVTQDRNGSSPSARWTVEPVPHAPGAVRLRG 292 + K ++L +R +K++ + E+ DRNG S +W E +P A + + Sbjct: 368 YGRDKTIKLLNRWASKYGNKYIKHIDYEVRYLYDRNGKVCSIKWLKENIPEAKTQIEIYK 427 Query: 293 RY 298 +Y Sbjct: 428 KY 429
>MRP2_ARATH (Q42093) Multidrug resistance-associated protein 2 (EC 3.6.3.44)| (Glutathione S-conjugate transporting ATPase 2) (ATP-energized glutathione S-conjugate pump 2) Length = 1623 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/35 (28%), Positives = 20/35 (57%) Frame = +2 Query: 242 WTVEPVPHAPGAVRLRGRYGRYLAASTEPFLLGMT 346 W +PVP+ ++ +G Y +T+ F+LG++ Sbjct: 8 WYCKPVPNGVWTKQVANAFGAYTPCATDSFVLGIS 42
>PPOD_LYCES (Q08306) Polyphenol oxidase D, chloroplast precursor (EC 1.10.3.1)| (PPO) (Catechol oxidase) Length = 591 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 15/52 (28%) Frame = +2 Query: 218 NGSSPSARWTVEPVPHAP---------------GAVRLRGRYGRYLAASTEP 328 +G + ++ T+E +PH P GA+ RG YG + +A +P Sbjct: 309 SGITLNSPGTIENIPHGPVHIWSGTVRGSTLPNGAISKRGEYGHFYSAGLDP 360
>SUHB_CAVPO (P52841) 3-beta-hydroxysteroid sulfotransferase (EC 2.8.2.2)| (Alcohol sulfotransferase) (Pregnenolone sulfotransferase) (Hydroxysteroid sulfotransferase 2) (HST2) Length = 286 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +2 Query: 152 LKSRHDKFLYADEDELHVTQDRNGSSPSARWTVEPV 259 L+ DKFL DED + VT ++G++ W +E V Sbjct: 22 LREVRDKFLVKDEDTITVTYPKSGTN----WLIEIV 53
>DNAJ_ACTAC (P77866) Chaperone protein dnaJ| Length = 375 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +2 Query: 218 NGSSPSARWTVEPVPHAPGAVRLRGRYGRYLAASTEPFLLGMTGRKV 358 +G+ A VE PH GA RLR + G ++ F G TG+K+ Sbjct: 149 HGTGAEAGSKVETCPHCHGAGRLRRQQGFFVTEQPCHFCHG-TGKKI 194
>SST2_YEAST (P11972) Protein SST2| Length = 698 Score = 27.3 bits (59), Expect = 8.8 Identities = 17/60 (28%), Positives = 25/60 (41%) Frame = +2 Query: 158 SRHDKFLYADEDELHVTQDRNGSSPSARWTVEPVPHAPGAVRLRGRYGRYLAASTEPFLL 337 +RH L+ LH QDR P + +P P V + +Y R + T P +L Sbjct: 101 ARHLLTLFMSSKLLHTPQDRTRGEPKEKVLFQPTPK---GVAVLQKYVRDIGLKTMPDIL 157
>SER1_DROME (P17205) Serine proteases 1/2 precursor (EC 3.4.21.-) (Protein| Jonah 99Cii/99Ciii) Length = 265 Score = 27.3 bits (59), Expect = 8.8 Identities = 8/12 (66%), Positives = 8/12 (66%) Frame = -1 Query: 101 GWWLVVDSWGGT 66 GWW V WGGT Sbjct: 155 GWWAVASGWGGT 166
>MOAA_SYNPW (Q9EYN8) Molybdenum cofactor biosynthesis protein A| Length = 347 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 6/38 (15%) Frame = +2 Query: 236 ARWTVEPVPHAPGAVRLRGRY----GRY--LAASTEPF 331 ARW + P+P GA R Y GR +A+ TEPF Sbjct: 237 ARWPLRPLPRESGATSRRWSYADGRGRIGTIASITEPF 274
>FASC_STRPU (Q05634) Fascin| Length = 495 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +2 Query: 164 HDKFLYADEDELHVTQDRNGSSPSARWTVEPVPH 265 H ++L + +EL + + + S+PSA WTV+ H Sbjct: 102 HQRYLACNGEEL-ICSESSTSNPSANWTVQLAIH 134
>ARGO_SHIFL (Q7UBP8) Arginine exporter protein argO| Length = 211 Score = 27.3 bits (59), Expect = 8.8 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -1 Query: 98 WWLVVDSWGGTLFYLWDG 45 W L + +WGG +F LW G Sbjct: 67 WLLALVTWGGVVFLLWYG 84
>ARGO_ECO57 (Q8XD10) Arginine exporter protein argO| Length = 211 Score = 27.3 bits (59), Expect = 8.8 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -1 Query: 98 WWLVVDSWGGTLFYLWDG 45 W L + +WGG +F LW G Sbjct: 67 WLLALVTWGGVVFLLWYG 84 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,306,340 Number of Sequences: 219361 Number of extensions: 479949 Number of successful extensions: 1731 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 1697 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1731 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
