ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart28f04 |
|---|---|
| Clone Library Name | barley_pub |
>LEA14_GOSHI (P46518) Late embryogenesis abundant protein Lea14-A| Length = 151 Score = 58.9 bits (141), Expect = 1e-08 Identities = 33/122 (27%), Positives = 59/122 (48%) Frame = +1 Query: 226 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 405 ++K KDF+ +++ KP A V+ + + H+ + V + NP IP+ Sbjct: 5 LEKAKDFV------VDKVANIKKPEASVSDVDLKHVSRECVEYGAKVSVSNPYSHSIPIC 58 Query: 406 DIDYLIDSDGRKLVAGLIPDAGTVRAHGEETVKVPITLDFDDIRSTYADIKPGSIIPYLL 585 +I Y S GR + +G IPD G+++A + VP+ + ++ + S DI I Y L Sbjct: 59 EISYNFRSAGRGIASGTIPDPGSLKASDTTMLDVPVKVPYNILVSLVKDIGADWDIDYEL 118 Query: 586 RV 591 + Sbjct: 119 EL 120
>LEA14_SOYBN (P46519) Desiccation protectant protein Lea14 homolog| Length = 152 Score = 58.2 bits (139), Expect = 2e-08 Identities = 32/120 (26%), Positives = 56/120 (46%) Frame = +1 Query: 226 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 405 +DK K+++ E+ KP A V + + + + V + NP PIP+ Sbjct: 5 LDKAKNYV------AEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVSNPYSTPIPIC 58 Query: 406 DIDYLIDSDGRKLVAGLIPDAGTVRAHGEETVKVPITLDFDDIRSTYADIKPGSIIPYLL 585 +I Y + S G+++ +G IPD G+++A + VP+ + + S DI I Y L Sbjct: 59 EIKYSLKSAGKEIASGTIPDPGSLKASDTTMLDVPVKVPHSILLSLAKDIGADWDIDYQL 118
>DRPD_CRAPL (P22241) Desiccation-related protein PCC27-45| Length = 151 Score = 55.8 bits (133), Expect = 9e-08 Identities = 32/122 (26%), Positives = 60/122 (49%) Frame = +1 Query: 226 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 405 ++K K+F+ E+ KP A V + + +G H + + ++NP IP+ Sbjct: 5 MNKAKNFV------AEKVANVEKPKASVEDVDLKDVGRHGITYLTRICVENPYSASIPVG 58 Query: 406 DIDYLIDSDGRKLVAGLIPDAGTVRAHGEETVKVPITLDFDDIRSTYADIKPGSIIPYLL 585 +I Y + S GR +V+G IPD G+++ + + ++ I + + S DI I Y+L Sbjct: 59 EIKYTLKSAGRVIVSGNIPDPGSLKGNDKTMLEPAIKVPHSALVSLIKDIGADMDIDYVL 118 Query: 586 RV 591 + Sbjct: 119 EL 120
>LEA14_ARATH (O03983) Putative dessication-related protein LEA14| Length = 151 Score = 52.8 bits (125), Expect = 8e-07 Identities = 29/122 (23%), Positives = 56/122 (45%) Frame = +1 Query: 226 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 405 +DK KDF+ D + KP V + + + + + V + NP IP+ Sbjct: 5 LDKAKDFVAD------KLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPIC 58 Query: 406 DIDYLIDSDGRKLVAGLIPDAGTVRAHGEETVKVPITLDFDDIRSTYADIKPGSIIPYLL 585 +I + S GR++ G IPD G+++A + +P+ + + + + D+ I Y L Sbjct: 59 EISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVVVPYSILFNLARDVGVDWDIDYEL 118 Query: 586 RV 591 ++ Sbjct: 119 QI 120
>Y1218_HAEIN (Q57251) Putative L-lactate permease| Length = 532 Score = 38.1 bits (87), Expect = 0.020 Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 10/116 (8%) Frame = +1 Query: 268 IEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLVDIDYLIDSDGRKLV 447 IE A GFG P+A A I V +G H + + LI N PV V KL Sbjct: 115 IEGASGFGTPAAIAAPILV-GLGFHPLKVAMLALIMNSVPVSFGAVGTPTWFGFGALKLS 173 Query: 448 AGLIPDAGTVRA--HGEETVKVP-----ITLDFDDIRSTYADI---KPGSIIPYLL 585 +I + G++ A H + +P I +++DDIR I G ++PY L Sbjct: 174 EDMILEIGSITAFIHSIAALIIPLLALRILVNWDDIRKNIVFIYISVLGCVVPYFL 229
>UC29_MAIZE (P80635) Unknown protein from 2D-PAGE of etiolated coleoptile (Spot| 45) (Fragment) Length = 15 Score = 36.6 bits (83), Expect = 0.057 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = +1 Query: 376 NPNPVPIPLVDIDYL 420 NPNPVPIPLVDIDYL Sbjct: 1 NPNPVPIPLVDIDYL 15
>TSAG_RICTS (P22940) 56 kDa type-specific antigen precursor (TSA) (56 kDa scrub| typhus antigen) (STA56) (TSG56) Length = 524 Score = 33.1 bits (74), Expect = 0.64 Identities = 20/61 (32%), Positives = 28/61 (45%) Frame = +1 Query: 379 PNPVPIPLVDIDYLIDSDGRKLVAGLIPDAGTVRAHGEETVKVPITLDFDDIRSTYADIK 558 PN P P ++D L R LV G+ T +H + P+ + D I Y+DIK Sbjct: 214 PNVQPRPRQNLDILDHGQWRHLVVGV-----TALSHANKPSVTPVKVLSDKITKIYSDIK 268 Query: 559 P 561 P Sbjct: 269 P 269
>DEF_SYNEL (Q8DIB4) Peptide deformylase (EC 3.5.1.88) (PDF) (Polypeptide| deformylase) Length = 188 Score = 32.7 bits (73), Expect = 0.83 Identities = 17/61 (27%), Positives = 33/61 (54%) Frame = +1 Query: 226 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 405 + KV D I DI K+ + + SAD + P +G+++ LV+D+ +P P+ ++ Sbjct: 34 VSKVDDSIRDIARKMLQTMY----SADGIGLAAPQVGINKQILVIDIHPDDPEAEPLVMI 89 Query: 406 D 408 + Sbjct: 90 N 90
>Y1138_METJA (Q58538) Hypothetical protein MJ1138| Length = 174 Score = 32.0 bits (71), Expect = 1.4 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Frame = +1 Query: 277 AVGFG----KPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLVDIDYLIDS--DGR 438 AVGF +P +V + + + + VL+ NPNP+ I + I + I + G Sbjct: 17 AVGFSGCLEQPKIEVVGQKIQKVDADNTKIEIQVLVDNPNPIGISIDKISFDIYALVGGD 76 Query: 439 KLVAGLIPDAGTVRAHGEETVKVPITL 519 K+ G + G T +P+T+ Sbjct: 77 KIYLGHGEQSNIKITSGNTTFTLPVTI 103
>PICA_RAT (O55012) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) (rCALM) Length = 640 Score = 31.6 bits (70), Expect = 1.8 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 13 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 126 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICAL_HUMAN (Q13492) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) Length = 652 Score = 31.6 bits (70), Expect = 1.8 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 13 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 126 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICA_MOUSE (Q7M6Y3) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia) (CALM) Length = 660 Score = 31.6 bits (70), Expect = 1.8 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 13 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 126 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>ALKJ_PSEPU (Q9WWW2) Alcohol dehydrogenase [acceptor] (EC 1.1.99.-)| Length = 552 Score = 31.2 bits (69), Expect = 2.4 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 11/116 (9%) Frame = +1 Query: 244 FIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVD----VLIKNPNPVPIPLVDI 411 ++ D G KI AVG+G LH DL+ + +K+ NP+ PL+D Sbjct: 364 YLKDHGRKI--AVGYGYT-------------LHICDLLPKSRGRIGLKSANPMDDPLIDP 408 Query: 412 DYLID-SDGRKLVAGL-----IPDAGTVRAH-GEETVKVPITLDFDDIRSTYADIK 558 +YL D D + ++AG+ I DA ++ H E V P D+I ADI+ Sbjct: 409 NYLSDPEDIKTMIAGIKIGRAIFDAPSMAKHFKREIVPGPAVTSDDEI---VADIR 461
>Y3593_NOCFA (Q5YTQ0) UPF0042 protein nfa35930| Length = 316 Score = 30.8 bits (68), Expect = 3.2 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Frame = +1 Query: 226 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLH-----RADLVVDV-LIKNPNP 387 ID + IH + K+EEA G G P+A ++ V G AD+V+DV + NP+ Sbjct: 163 IDTTELSIHQLHRKLEEAYGGGAPAA--LQLTVQSFGFKYGVPLDADMVLDVRFLPNPHW 220 Query: 388 VP 393 +P Sbjct: 221 IP 222
>FTSK2_RALSO (Q8XWX9) DNA translocase ftsK 2| Length = 781 Score = 30.0 bits (66), Expect = 5.4 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 12/100 (12%) Frame = +1 Query: 226 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPL- 402 ID++ D + +G+K+EE + A A IH+ + V+ LIK P I Sbjct: 556 IDELADLMMVVGKKVEELIARIAQKARAAGIHLVLATQRPSVDVITGLIKANVPTRIAFQ 615 Query: 403 ----VDIDYLIDSDGRKLVAG------LIPDAG-TVRAHG 489 +D ++D G + + G L P G VR HG Sbjct: 616 VSSKIDSRTILDQQGAEALLGMGDMLYLAPGTGLPVRVHG 655
>NUDC3_HUMAN (Q8IVD9) NudC domain-containing protein 3| Length = 361 Score = 29.6 bits (65), Expect = 7.0 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Frame = +1 Query: 373 KNPNPVPIPLVDIDYLIDSDGRKLVAGLIPDAGTVR--AHGEETVKVP 510 K P PVP+ ++ID + DG + V + P G V+ AHG + + P Sbjct: 106 KEPVPVPVQEIEIDSTTELDGHQEVEKVQP-PGPVKEMAHGSQEAEAP 152 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,677,389 Number of Sequences: 219361 Number of extensions: 770470 Number of successful extensions: 3105 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3041 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3102 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
