>OTUD3_HUMAN (Q5T2D3) OTU domain-containing protein 3|
          Length = 398

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 427 SLLERLGTYGLAEYQIEGDGNCQFRALADQI 519
           S   +L   GL   ++ GDGNC FRAL DQ+
Sbjct: 55  SFANQLQALGLKLREVPGDGNCLFRALGDQL 85

>OTU6A_HUMAN (Q7L8S5) OTU domain-containing protein 6A|
          Length = 288

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 418 DHESLLERLGTYGLAEYQIEGDGNCQFRALADQI 519
           + E L   LG  GL    I  DG+C +RA+ DQ+
Sbjct: 128 EEEKLAAILGARGLEMKAIPADGHCMYRAIQDQL 161

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 27.3 bits (59), Expect(2) = 3.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 5   HHPSSLRRTRHRARPPPKHANFPPS 79
           H PS        A PPP H + PPS
Sbjct: 64  HVPSPRHAPPRHAYPPPSHGHLPPS 88



 Score = 21.6 bits (44), Expect(2) = 3.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 70  SPIVAVSRPPPLHSTGVAPRS 132
           SP+++ S PPP  S G  P S
Sbjct: 110 SPVISPSHPPP--SYGAPPPS 128

>DCUP_NITEU (Q82X50) Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD)|
          Length = 355

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 451 YGLAEYQIEGDGNCQFRALADQIFRNPDYHRHV 549
           + LA Y +EG G+ +FR +   ++  PD   H+
Sbjct: 149 FTLACYMVEGAGSSEFRQIKTMLYARPDLLHHI 181

>CD2_RAT (P08921) T-cell surface antigen CD2 precursor (T-cell surface|
           antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (OX-34
           antigen)
          Length = 344

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = +3

Query: 12  PAPSGEHATAPAHHRSTPIFPHRSRQPSSSAPLDWRRTEIHPGSDRLLPPLTVNP 176
           P P G H   P H    P   +R  QP    P     T++H      LP   V P
Sbjct: 277 PPPPGHHLQTPGHRPLPPSHRNREHQPKKRPPPS--GTQVHQQKGPPLPRPRVQP 329

>RIMS1_HUMAN (Q86UR5) Regulating synaptic membrane exocytosis protein 1|
            (Rab3-interacting molecule 1) (RIM 1)
          Length = 1692

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
 Frame = +3

Query: 3    TTIPAPSGEHATAPAHHRSTPIFPHRS------RQPSSSAPLDWRRTEIHP 137
            TT+  P  +  T   HHRS  + PHR       R    + PL     EIHP
Sbjct: 936  TTLTVPEQQRTT---HHRSRSVSPHRGNDQGKPRSRLPNVPLQRSLDEIHP 983

>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1|
            (Rab3-interacting molecule 1) (RIM 1)
          Length = 1615

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
 Frame = +3

Query: 3    TTIPAPSGEHATAPAHHRSTPIFPHRS------RQPSSSAPLDWRRTEIHP 137
            TT+  P  +  T   HHRS  + PHR       R    + PL     EIHP
Sbjct: 950  TTLTVPEQQRTT---HHRSRSVSPHRGDDQGRPRSRLPNVPLQRSLDEIHP 997

>YNJ5_CAEEL (P34549) Hypothetical protein R10E11.5|
          Length = 529

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
 Frame = +1

Query: 322 GRSLGKRLSHLDSLPHTPRV-NGKIP-------DFSNATIDHESLL 435
           G S  + L+HLD +PH  RV + KIP       DF  A I   +LL
Sbjct: 80  GSSTPRTLAHLDKIPHKQRVYDAKIPKKNTTHSDFKAAPIRFNALL 125

>YHJU_ECOLI (P37659) Hypothetical protein yhjU|
          Length = 559

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
 Frame = -3

Query: 433 IMIHGLWLHY*NREFSH*LEECAGVNLSGTVAFQGCARWSLLQLKVHRRSRHPHSPEYWC 254
           +M H LW H+ + EF          N +   ++ G A   LL+    + S   H+  Y  
Sbjct: 255 LMSHPLWSHF-DIEFK---------NFNSATSYSGPAAIRLLRASCGQTS---HTNLYQ- 300

Query: 253 *YLSRSFY*LGPVVQTCYLRENIENIGFT--VSGGSNRSDPGWISVRRQSSGAEED 92
                      P    CYL +N+  +GFT  +  G N    G++   R++ G + +
Sbjct: 301 -----------PANNDCYLFDNLSKLGFTQHLMMGHNGQFGGFLKEVRENGGMQSE 345

>PXL1_YEAST (P36166) Paxillin-like protein 1|
          Length = 706

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 11  PSSLRRTRHRARPPPKHANFPPS*PSAV---LLRSTRLASHRDP 133
           P  L  +  R+  PPK++NF  S PS +   + R +  AS  DP
Sbjct: 96  PPVLENSERRSVTPPKNSNFTSSRPSDISRSISRPSERASQEDP 139

>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells|
           cyclophilin-related protein) (NK-TR protein)
          Length = 1453

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 20/78 (25%), Positives = 32/78 (41%)
 Frame = +2

Query: 17  SLRRTRHRARPPPKHANFPPS*PSAVLLRSTRLASHRDPSGVRPVAAAAYSEPYILYVLS 196
           ++RR RH+ RP  +HA            R   ++S  +P   R V+   YSE   +    
Sbjct: 220 TIRRRRHKRRPKVRHAK----------KRRKEMSSSEEPRRKRTVSPEGYSERSDVNEKR 269

Query: 197 EIACLNNRTKLVKAPAQV 250
            +     R K V  P ++
Sbjct: 270 SVDSNTKREKPVVRPEEI 287

>GLMU_CORJK (Q4JU42) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 487

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 199 LRENIENIGFTVSGGSNRSDPGWISVRRQSSGAEEDG 89
           ++E++      VSGG  R+  GW++ +R  + A E G
Sbjct: 429 IKEDVPPGALVVSGGKQRNVEGWVAKKRPGTPAAEAG 465

>PKNH_MYCTU (Q11053) Probable serine/threonine-protein kinase pknH (EC|
           2.7.11.1)
          Length = 626

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +2

Query: 5   HHPSSLRRTRHRARPPPKHANFPPS*PSAVLLRSTRLASHRDPSGVRPVAAAAYSEP 175
           H    LRR++    P P     PP+ P+  +      A    P GV+P    +Y+ P
Sbjct: 283 HAADILRRSQESTLPAPPKPVPPPTMPATAMAPRQPPAPPVTPPGVQPAPKPSYTPP 339

>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)|
          Length = 1072

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 21/56 (37%), Positives = 25/56 (44%)
 Frame = +3

Query: 9    IPAPSGEHATAPAHHRSTPIFPHRSRQPSSSAPLDWRRTEIHPGSDRLLPPLTVNP 176
            +P PS + A  P HH   P      RQP  +AP +      HP SD     LT NP
Sbjct: 972  VPHPSSQ-AGPPLHHSGAPPPSQPPRQPPQAAPGN------HPHSD-----LTFNP 1015


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,940,703
Number of Sequences: 219361
Number of extensions: 1767859
Number of successful extensions: 5365
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5350
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)