ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart28d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464260.1| Oryza sativa (japonica cultivar-group), mRNA 321 1e-84
2dbj|AK067291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 313 3e-82
3gb|AY106393.1| Zea mays PCO117653 mRNA sequence 260 4e-66
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
5dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
6dbj|AK073551.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 2e-19
7ref|NM_202623.1| Arabidopsis thaliana cysteine-type peptidase AT... 68 3e-08
8ref|NM_113124.1| Arabidopsis thaliana cysteine-type peptidase AT... 68 3e-08
9emb|BX825915.1|CNS0A7ID Arabidopsis thaliana Full-length cDNA Co... 68 3e-08
10gb|AY085012.1| Arabidopsis thaliana clone 124466 mRNA, complete ... 68 3e-08
11gb|AY450637.1| Solanum tuberosum clone plbr10 unknown protein mR... 60 8e-06
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
13dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
14dbj|AP002046.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 56 1e-04
15gb|AF488416.1| Zea mays chromosome 9 BAC 9C20 complete sequence 46 0.12
16gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 42 1.9
17gb|AY625117.1| Escherichia coli B PotI gene, partial cds 42 1.9
18gb|AE014075.1| Escherichia coli CFT073, complete genome 42 1.9
19gb|CP000243.1| Escherichia coli UTI89, complete genome 42 1.9
20gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 42 1.9
21emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.9
22dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 42 1.9
23gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.9
24gb|AC010722.2|AC010722 Homo sapiens BAC clone RP11-122L9 from Y,... 42 1.9
25gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 42 1.9
26gb|AC009134.6|AC009134 Homo sapiens chromosome 16 clone RP11-505... 42 1.9
27gb|U91325.1|HSU91325 Human chromosome 16p13.11 BAC clone CIT987S... 42 1.9
28gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 42 1.9
29dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 42 1.9
30gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 42 1.9
31gb|CP000036.1| Shigella boydii Sb227, complete genome 42 1.9
32gb|CP000038.1| Shigella sonnei Ss046, complete genome 42 1.9
33gb|M93239.1|ECOPOTFGHI Escherichia coli periplasmic putrescine b... 42 1.9
34ref|XM_370049.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 7.4
35emb|BX323800.8| Zebrafish DNA sequence from clone DKEYP-73A2 in ... 40 7.4
36gb|AC153896.10| Mus musculus 10 BAC RP23-114D16 (Roswell Park Ca... 40 7.4
37gb|AC092177.4| Homo sapiens BAC clone RP11-69D8 from 2, complete... 40 7.4
38dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.4
39dbj|AP000421.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.4
40dbj|AB073160.1| Arabidopsis thaliana DNA, chromosome 4 centromer... 40 7.4
41gb|AF080121.1|T25C13 Arabidopsis thaliana BAC T25C13 40 7.4 
>ref|XM_464260.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1106

 Score =  321 bits (162), Expect = 1e-84
 Identities = 321/374 (85%)
 Strand = Plus / Plus

                                                                       
Query: 176 tatattctctatgttctctctgagatagcatgtctgaacaacaggaccaagttagtaaaa 235
           |||||| || ||| || ||||||| ||||||||||||||||||||| || | ||| ||||
Sbjct: 163 tatattttcaatgctccctctgaggtagcatgtctgaacaacaggatcatgctagcaaaa 222

                                                                       
Query: 236 gctcctgctcaagtattagcaccagtactcaggggagtgaggatgacgggaccgtcggtg 295
           | || ||||||||| |||||||||||||||||| ||||||||| || | ||| || ||| 
Sbjct: 223 gttcttgctcaagtcttagcaccagtactcaggagagtgaggaggatgtgacagttggta 282

                                                                       
Query: 296 cacttttaactgaagcaaagaccaacgggcgcagccttggaaagcgactgtcccacttag 355
           | ||||||||||||||||||| ||  || || || |||||||| || || ||||||||||
Sbjct: 283 cccttttaactgaagcaaagaacagtggacggagtcttggaaaacgcctttcccacttag 342

                                                                       
Query: 356 attcactcccgcacactcctcgagttaatgggaaaattcccgattttagtaatgcaacca 415
           ||||  |||||||||||||||||||||||||| ||||||| ||| ||| ||||||||| |
Sbjct: 343 attctatcccgcacactcctcgagttaatgggcaaattcctgatgttaataatgcaacaa 402

                                                                       
Query: 416 tagaccatgaatcattattggaaaggttgggcacttatggcttagctgaatatcagatag 475
           ||||||||||| ||||| ||||||| |||||||||||||||||||||||||  || || |
Sbjct: 403 tagaccatgaaacattactggaaagattgggcacttatggcttagctgaattccaaattg 462

                                                                       
Query: 476 aaggggatgggaattgccagtttcgagctctggcagaccagatattccgcaatcctgatt 535
           |||| || || ||||| ||||| |||||| ||||||| |||||||||||||||||||| |
Sbjct: 463 aaggagacggaaattgtcagttccgagctttggcagatcagatattccgcaatcctgact 522

                         
Query: 536 accacagacatgtg 549
           | |||| |||||||
Sbjct: 523 atcacaaacatgtg 536
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>dbj|AK067291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104L05, full
           insert sequence
          Length = 1107

 Score =  313 bits (158), Expect = 3e-82
 Identities = 320/374 (85%)
 Strand = Plus / Plus

                                                                       
Query: 176 tatattctctatgttctctctgagatagcatgtctgaacaacaggaccaagttagtaaaa 235
           |||||| || ||| || ||||||| ||||||||||||||||||||| || | ||| ||||
Sbjct: 163 tatattttcaatgctccctctgaggtagcatgtctgaacaacaggatcatgctagcaaaa 222

                                                                       
Query: 236 gctcctgctcaagtattagcaccagtactcaggggagtgaggatgacgggaccgtcggtg 295
           | || ||||||||| |||||||||||||||||| ||||||||| || | ||| || ||| 
Sbjct: 223 gttcttgctcaagtcttagcaccagtactcaggagagtgaggaggatgtgacagttggta 282

                                                                       
Query: 296 cacttttaactgaagcaaagaccaacgggcgcagccttggaaagcgactgtcccacttag 355
           | ||||||||||||||||||| ||  || || || |||||||| || || ||||||||||
Sbjct: 283 cccttttaactgaagcaaagaacagtggacggagtcttggaaaacgcctttcccacttag 342

                                                                       
Query: 356 attcactcccgcacactcctcgagttaatgggaaaattcccgattttagtaatgcaacca 415
           ||||  |||||||||||||||||||||||||| ||||||| ||| ||| ||||||||| |
Sbjct: 343 attctatcccgcacactcctcgagttaatgggcaaattcctgatgttaataatgcaacaa 402

                                                                       
Query: 416 tagaccatgaatcattattggaaaggttgggcacttatggcttagctgaatatcagatag 475
           ||||||||||| ||||| ||||||| |||||||||||||||||||||||||  ||  | |
Sbjct: 403 tagaccatgaaacattactggaaagattgggcacttatggcttagctgaattccaagttg 462

                                                                       
Query: 476 aaggggatgggaattgccagtttcgagctctggcagaccagatattccgcaatcctgatt 535
           |||| || || ||||| ||||| |||||| ||||||| |||||||||||||||||||| |
Sbjct: 463 aaggagacggaaattgtcagttccgagctttggcagatcagatattccgcaatcctgact 522

                         
Query: 536 accacagacatgtg 549
           | |||| |||||||
Sbjct: 523 atcacaaacatgtg 536
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>gb|AY106393.1| Zea mays PCO117653 mRNA sequence
          Length = 1006

 Score =  260 bits (131), Expect = 4e-66
 Identities = 197/219 (89%)
 Strand = Plus / Plus

                                                                       
Query: 331 cttggaaagcgactgtcccacttagattcactcccgcacactcctcgagttaatgggaaa 390
           ||||||||||| || || |||||||||||  ||||||||||||| || ||||||||||||
Sbjct: 271 cttggaaagcgcctttcacacttagattcgatcccgcacactccacgtgttaatgggaaa 330

                                                                       
Query: 391 attcccgattttagtaatgcaaccatagaccatgaatcattattggaaaggttgggcact 450
           ||||| ||||||| |||||| || || || |||||||||||||| ||||| || ||||||
Sbjct: 331 attccagattttaataatgcgacaattgatcatgaatcattattagaaagattaggcact 390

                                                                       
Query: 451 tatggcttagctgaatatcagatagaaggggatgggaattgccagtttcgagctctggca 510
           |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 391 tatggcttagctgaatatcaaatagaaggagatgggaattgccagttccgagctctggca 450

                                                  
Query: 511 gaccagatattccgcaatcctgattaccacagacatgtg 549
           ||||||||||||||||||||||| || |||| |||||||
Sbjct: 451 gaccagatattccgcaatcctgactatcacaaacatgtg 489



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 226 gttagtaaaagctcctgctcaagtattagcaccagtactcaggggagtgagga 278
           ||||| || ||||| | |||||||||||||| ||| ||||||| |||||||||
Sbjct: 157 gttagcaagagctcttcctcaagtattagcagcagcactcaggagagtgagga 209
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  135 bits (68), Expect = 2e-28
 Identities = 155/184 (84%)
 Strand = Plus / Minus

                                                                           
Query: 176     tatattctctatgttctctctgagatagcatgtctgaacaacaggaccaagttagtaaaa 235
               |||||| || ||| || ||||||| ||||||||||||||||||||| || | ||| ||||
Sbjct: 3708797 tatattttcaatgctccctctgaggtagcatgtctgaacaacaggatcatgctagcaaaa 3708738

                                                                           
Query: 236     gctcctgctcaagtattagcaccagtactcaggggagtgaggatgacgggaccgtcggtg 295
               | || ||||||||| |||||||||||||||||| ||||||||| || | ||| || ||| 
Sbjct: 3708737 gttcttgctcaagtcttagcaccagtactcaggagagtgaggaggatgtgacagttggta 3708678

                                                                           
Query: 296     cacttttaactgaagcaaagaccaacgggcgcagccttggaaagcgactgtcccacttag 355
               | ||||||||||||||||||| ||  || || || |||||||| || || ||||||||||
Sbjct: 3708677 cccttttaactgaagcaaagaacagtggacggagtcttggaaaacgcctttcccacttag 3708618

                   
Query: 356     attc 359
               ||||
Sbjct: 3708617 attc 3708614



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                           
Query: 366     gcacactcctcgagttaatgggaaaattcccgattttagtaatgcaaccatagaccatga 425
               |||||||||||||||||||||| ||||||| ||| ||| ||||||||| |||||||||||
Sbjct: 3708392 gcacactcctcgagttaatgggcaaattcctgatgttaataatgcaacaatagaccatga 3708333

                                
Query: 426     atcattattggaaaggt 442
               | ||||| |||||||||
Sbjct: 3708332 aacattactggaaaggt 3708316



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                        
Query: 493     cagtttcgagctctggcagaccagatattccgcaatcctgattaccacagacatgtg 549
               ||||| |||||| ||||||| |||||||||||||||||||| || |||| |||||||
Sbjct: 3707852 cagttccgagctttggcagatcagatattccgcaatcctgactatcacaaacatgtg 3707796



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                        
Query: 442     ttgggcacttatggcttagctgaat 466
               |||||||||||||||||||||||||
Sbjct: 3708239 ttgggcacttatggcttagctgaat 3708215
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>dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0669G09
          Length = 140067

 Score =  135 bits (68), Expect = 2e-28
 Identities = 155/184 (84%)
 Strand = Plus / Minus

                                                                         
Query: 176   tatattctctatgttctctctgagatagcatgtctgaacaacaggaccaagttagtaaaa 235
             |||||| || ||| || ||||||| ||||||||||||||||||||| || | ||| ||||
Sbjct: 49114 tatattttcaatgctccctctgaggtagcatgtctgaacaacaggatcatgctagcaaaa 49055

                                                                         
Query: 236   gctcctgctcaagtattagcaccagtactcaggggagtgaggatgacgggaccgtcggtg 295
             | || ||||||||| |||||||||||||||||| ||||||||| || | ||| || ||| 
Sbjct: 49054 gttcttgctcaagtcttagcaccagtactcaggagagtgaggaggatgtgacagttggta 48995

                                                                         
Query: 296   cacttttaactgaagcaaagaccaacgggcgcagccttggaaagcgactgtcccacttag 355
             | ||||||||||||||||||| ||  || || || |||||||| || || ||||||||||
Sbjct: 48994 cccttttaactgaagcaaagaacagtggacggagtcttggaaaacgcctttcccacttag 48935

                 
Query: 356   attc 359
             ||||
Sbjct: 48934 attc 48931



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                         
Query: 366   gcacactcctcgagttaatgggaaaattcccgattttagtaatgcaaccatagaccatga 425
             |||||||||||||||||||||| ||||||| ||| ||| ||||||||| |||||||||||
Sbjct: 48709 gcacactcctcgagttaatgggcaaattcctgatgttaataatgcaacaatagaccatga 48650

                              
Query: 426   atcattattggaaaggt 442
             | ||||| |||||||||
Sbjct: 48649 aacattactggaaaggt 48633



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                      
Query: 493   cagtttcgagctctggcagaccagatattccgcaatcctgattaccacagacatgtg 549
             ||||| |||||| ||||||| |||||||||||||||||||| || |||| |||||||
Sbjct: 48169 cagttccgagctttggcagatcagatattccgcaatcctgactatcacaaacatgtg 48113



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 442   ttgggcacttatggcttagctgaat 466
             |||||||||||||||||||||||||
Sbjct: 48556 ttgggcacttatggcttagctgaat 48532
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>dbj|AK073551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044I12, full
           insert sequence
          Length = 1227

 Score =  105 bits (53), Expect = 2e-19
 Identities = 158/193 (81%)
 Strand = Plus / Plus

                                                                       
Query: 357 ttcactcccgcacactcctcgagttaatgggaaaattcccgattttagtaatgcaaccat 416
           |||| ||||||||||||||||||||||||| ||||| ||  || ||  |||||||||  |
Sbjct: 348 ttcaatcccgcacactcctcgagttaatggaaaaatccctaatcttgataatgcaacttt 407

                                                                       
Query: 417 agaccatgaatcattattggaaaggttgggcacttatggcttagctgaatatcagataga 476
            || ||||||  ||| | |||||||||||| | |||||| || || || | ||| |||||
Sbjct: 408 ggatcatgaaagattgtcggaaaggttgggaaattatggtttggccgagtttcaaataga 467

                                                                       
Query: 477 aggggatgggaattgccagtttcgagctctggcagaccagatattccgcaatcctgatta 536
            || ||||| ||||| ||||| |||||| |||||||||||||||| ||||| || |||||
Sbjct: 468 gggtgatggaaattgtcagttccgagctttggcagaccagatatttcgcaaccccgatta 527

                        
Query: 537 ccacagacatgtg 549
            |||| |||||||
Sbjct: 528 tcacaaacatgtg 540
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>ref|NM_202623.1| Arabidopsis thaliana cysteine-type peptidase AT3G22260 transcript
           variant AT3G22260.2 mRNA, complete cds
          Length = 1065

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Plus

                                                                       
Query: 439 aggttgggcacttatggcttagctgaatatcagatagaaggggatgggaattgccagttt 498
           ||||||| ||| ||||| ||||| ||||  || || || || ||||| ||||||||||||
Sbjct: 438 aggttggccacatatggtttagcggaattgcaaatggagggagatggaaattgccagttt 497

                                                             
Query: 499 cgagctctggcagaccagatattccgcaatcctgattaccacagacatgt 548
           |||||| | ||||||||| | ||||||||| | |||||||| | ||||||
Sbjct: 498 cgagctttagcagaccagcttttccgcaatgcagattaccataaacatgt 547
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>ref|NM_113124.1| Arabidopsis thaliana cysteine-type peptidase AT3G22260 transcript
           variant AT3G22260.1 mRNA, complete cds
          Length = 1145

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Plus

                                                                       
Query: 439 aggttgggcacttatggcttagctgaatatcagatagaaggggatgggaattgccagttt 498
           ||||||| ||| ||||| ||||| ||||  || || || || ||||| ||||||||||||
Sbjct: 554 aggttggccacatatggtttagcggaattgcaaatggagggagatggaaattgccagttt 613

                                                             
Query: 499 cgagctctggcagaccagatattccgcaatcctgattaccacagacatgt 548
           |||||| | ||||||||| | ||||||||| | |||||||| | ||||||
Sbjct: 614 cgagctttagcagaccagcttttccgcaatgcagattaccataaacatgt 663
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>emb|BX825915.1|CNS0A7ID Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL72ZC06 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1066

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Plus

                                                                       
Query: 439 aggttgggcacttatggcttagctgaatatcagatagaaggggatgggaattgccagttt 498
           ||||||| ||| ||||| ||||| ||||  || || || || ||||| ||||||||||||
Sbjct: 438 aggttggccacatatggtttagcggaattgcaaatggagggagatggaaattgccagttt 497

                                                             
Query: 499 cgagctctggcagaccagatattccgcaatcctgattaccacagacatgt 548
           |||||| | ||||||||| | ||||||||| | |||||||| | ||||||
Sbjct: 498 cgagctttagcagaccagcttttccgcaatgcagattaccataaacatgt 547
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>gb|AY085012.1| Arabidopsis thaliana clone 124466 mRNA, complete sequence
          Length = 1145

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 91/110 (82%)
 Strand = Plus / Plus

                                                                       
Query: 439 aggttgggcacttatggcttagctgaatatcagatagaaggggatgggaattgccagttt 498
           ||||||| ||| ||||| ||||| ||||  || || || || ||||| ||||||||||||
Sbjct: 554 aggttggccacatatggtttagcggaattgcaaatggagggagatggaaattgccagttt 613

                                                             
Query: 499 cgagctctggcagaccagatattccgcaatcctgattaccacagacatgt 548
           |||||| | ||||||||| | ||||||||| | |||||||| | ||||||
Sbjct: 614 cgagctttagcagaccagcttttccgcaatgcagattaccataaacatgt 663
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>gb|AY450637.1| Solanum tuberosum clone plbr10 unknown protein mRNA, partial cds
          Length = 241

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 472 atagaaggggatgggaattgccagtttcga 501
           ||||||||||||||||||||||||||||||
Sbjct: 212 atagaaggggatgggaattgccagtttcga 241
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                         
Query: 493      cagtttcgagctctggcagaccagatattccgcaatcctgattaccacagacatgtg 549
                ||||| |||||| |||||||||||||||| ||||| || ||||| |||| |||||||
Sbjct: 27361785 cagttccgagctttggcagaccagatatttcgcaaccccgattatcacaaacatgtg 27361841



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 366      gcacactcctcgagttaatgggaaaat 392
                ||||||||||||||||||||| |||||
Sbjct: 27361263 gcacactcctcgagttaatggaaaaat 27361289
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>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0686E06
          Length = 150474

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                       
Query: 493    cagtttcgagctctggcagaccagatattccgcaatcctgattaccacagacatgtg 549
              ||||| |||||| |||||||||||||||| ||||| || ||||| |||| |||||||
Sbjct: 104612 cagttccgagctttggcagaccagatatttcgcaaccccgattatcacaaacatgtg 104668



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 366    gcacactcctcgagttaatgggaaaat 392
              ||||||||||||||||||||| |||||
Sbjct: 104090 gcacactcctcgagttaatggaaaaat 104116
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>dbj|AP002046.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MMP21
          Length = 18211

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                         
Query: 489   ttgccagtttcgagctctggcagaccagatattccgcaatcctgattaccacagacatgt 548
             |||||||||||||||| | ||||||||| | ||||||||| | |||||||| | ||||||
Sbjct: 10652 ttgccagtttcgagctttagcagaccagcttttccgcaatgcagattaccataaacatgt 10711
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>gb|AF488416.1| Zea mays chromosome 9 BAC 9C20 complete sequence
          Length = 143300

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 445  ggcacttatggcttagctgaata 467
            |||||||||||||||||||||||
Sbjct: 4595 ggcacttatggcttagctgaata 4573
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    ggcgtcgcaccgagatccatc 135
              |||||||||||||||||||||
Sbjct: 844381 ggcgtcgcaccgagatccatc 844361
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>gb|AY625117.1| Escherichia coli B PotI gene, partial cds
          Length = 504

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 115 ggcgtcgcaccgagatccatc 135
           |||||||||||||||||||||
Sbjct: 314 ggcgtcgcaccgagatccatc 294
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    ggcgtcgcaccgagatccatc 135
              |||||||||||||||||||||
Sbjct: 951989 ggcgtcgcaccgagatccatc 951969
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    ggcgtcgcaccgagatccatc 135
              |||||||||||||||||||||
Sbjct: 858819 ggcgtcgcaccgagatccatc 858799
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    ggcgtcgcaccgagatccatc 135
              |||||||||||||||||||||
Sbjct: 896848 ggcgtcgcaccgagatccatc 896828
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>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16
          Length = 348068

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    cgccaccgcgcccgcccacca 52
             |||||||||||||||||||||
Sbjct: 70625 cgccaccgcgcccgcccacca 70645
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    ggcgtcgcaccgagatccatc 135
              |||||||||||||||||||||
Sbjct: 898047 ggcgtcgcaccgagatccatc 898027
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 32      cgccaccgcgcccgcccacca 52
               |||||||||||||||||||||
Sbjct: 2390283 cgccaccgcgcccgcccacca 2390263
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>gb|AC010722.2|AC010722 Homo sapiens BAC clone RP11-122L9 from Y, complete sequence
          Length = 160723

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 33     gccaccgcgcccgcccaccaccgaa 57
              ||||||||||||| |||||||||||
Sbjct: 126985 gccaccgcgcccggccaccaccgaa 127009
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    ggcgtcgcaccgagatccatc 135
              |||||||||||||||||||||
Sbjct: 839199 ggcgtcgcaccgagatccatc 839179
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>gb|AC009134.6|AC009134 Homo sapiens chromosome 16 clone RP11-505I1, complete sequence
          Length = 193236

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 173   ccctatattctctatgttctc 193
             |||||||||||||||||||||
Sbjct: 20127 ccctatattctctatgttctc 20107
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>gb|U91325.1|HSU91325 Human chromosome 16p13.11 BAC clone CIT987SK-731F11 complete sequence
          Length = 135046

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 173    ccctatattctctatgttctc 193
              |||||||||||||||||||||
Sbjct: 112502 ccctatattctctatgttctc 112522
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 115     ggcgtcgcaccgagatccatc 135
               |||||||||||||||||||||
Sbjct: 1024571 ggcgtcgcaccgagatccatc 1024551
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 115     ggcgtcgcaccgagatccatc 135
               |||||||||||||||||||||
Sbjct: 1022912 ggcgtcgcaccgagatccatc 1022892
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 115    ggcgtcgcaccgagatccatc 135
              |||||||||||||||||||||
Sbjct: 686975 ggcgtcgcaccgagatccatc 686995
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    ggcgtcgcaccgagatccatc 135
              |||||||||||||||||||||
Sbjct: 800454 ggcgtcgcaccgagatccatc 800434
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    ggcgtcgcaccgagatccatc 135
              |||||||||||||||||||||
Sbjct: 894425 ggcgtcgcaccgagatccatc 894405
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>gb|M93239.1|ECOPOTFGHI Escherichia coli periplasmic putrescine binding protein (potF) gene,
            complete cds, (potG) gene, transmembrane protein (potH)
            and (potI) genes, complete cds
          Length = 5877

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 115  ggcgtcgcaccgagatccatc 135
            |||||||||||||||||||||
Sbjct: 5101 ggcgtcgcaccgagatccatc 5081
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>ref|XM_370049.1| Magnaporthe grisea 70-15 hypothetical protein (MG06564.4) partial
            mRNA
          Length = 1392

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   cctccggcgaacacgccacc 38
            ||||||||||||||||||||
Sbjct: 1039 cctccggcgaacacgccacc 1058
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>emb|BX323800.8| Zebrafish DNA sequence from clone DKEYP-73A2 in linkage group 11,
             complete sequence
          Length = 195592

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   ctatattctctatgttctct 194
             ||||||||||||||||||||
Sbjct: 10122 ctatattctctatgttctct 10103
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>gb|AC153896.10| Mus musculus 10 BAC RP23-114D16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 206003

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 464    aatatcagatagaaggggat 483
              ||||||||||||||||||||
Sbjct: 147563 aatatcagatagaaggggat 147544
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>gb|AC092177.4| Homo sapiens BAC clone RP11-69D8 from 2, complete sequence
          Length = 100132

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   gggagtgaggatgacgggac 287
             ||||||||||||||||||||
Sbjct: 69860 gggagtgaggatgacgggac 69879
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 37      ccgcgcccgcccaccaccga 56
               ||||||||||||||||||||
Sbjct: 1468836 ccgcgcccgcccaccaccga 1468855
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>dbj|AP000421.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:T13C12
          Length = 72800

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   atattctctatgttctctct 196
             ||||||||||||||||||||
Sbjct: 51871 atattctctatgttctctct 51852
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>dbj|AB073160.1| Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC
             clone:T11G11
          Length = 82451

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   atattctctatgttctctct 196
             ||||||||||||||||||||
Sbjct: 33598 atattctctatgttctctct 33579
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>gb|AF080121.1|T25C13 Arabidopsis thaliana BAC T25C13
          Length = 120067

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   atattctctatgttctctct 196
             ||||||||||||||||||||
Sbjct: 12584 atattctctatgttctctct 12565


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,871,053
Number of Sequences: 3902068
Number of extensions: 3871053
Number of successful extensions: 75703
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75273
Number of HSP's gapped (non-prelim): 428
length of query: 549
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 526
effective length of database: 17,143,297,704
effective search space: 9017374592304
effective search space used: 9017374592304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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