ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart28b02 |
|---|---|
| Clone Library Name | barley_pub |
>SER1_GALME (O96614) Sericin-1 (Silk gum protein 1) (Fragment)| Length = 115 Score = 31.6 bits (70), Expect = 1.1 Identities = 20/79 (25%), Positives = 32/79 (40%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SSGS S+G Sbjct: 11 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 70 Query: 345 HPSTCSHHPASGSPDAASA 401 + +SGS ++S+ Sbjct: 71 SSGSSGSSGSSGSSSSSSS 89 Score = 31.2 bits (69), Expect = 1.4 Identities = 20/79 (25%), Positives = 32/79 (40%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SSGS S+G Sbjct: 8 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 67 Query: 345 HPSTCSHHPASGSPDAASA 401 + +SGS ++S+ Sbjct: 68 SSGSSGSSGSSGSSGSSSS 86 Score = 30.4 bits (67), Expect = 2.5 Identities = 22/78 (28%), Positives = 32/78 (41%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SSGS S+G Sbjct: 23 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 82 Query: 345 HPSTCSHHPASGSPDAAS 398 S+ S + SGS +S Sbjct: 83 SSSSSSSN-GSGSSSGSS 99 Score = 30.4 bits (67), Expect = 2.5 Identities = 19/79 (24%), Positives = 32/79 (40%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SSGS S+G Sbjct: 20 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 79 Query: 345 HPSTCSHHPASGSPDAASA 401 + S ++GS ++ + Sbjct: 80 SSGSSSSSSSNGSGSSSGS 98 Score = 29.6 bits (65), Expect = 4.2 Identities = 20/79 (25%), Positives = 30/79 (37%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SS S S G Sbjct: 32 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSSSSSSNG 91 Query: 345 HPSTCSHHPASGSPDAASA 401 S+ +SGS +S+ Sbjct: 92 SGSSSGSSQSSGSQGGSSS 110 Score = 29.6 bits (65), Expect = 4.2 Identities = 19/79 (24%), Positives = 31/79 (39%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SSGS S+G Sbjct: 5 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 64 Query: 345 HPSTCSHHPASGSPDAASA 401 + +SGS ++ + Sbjct: 65 SSGSSGSSGSSGSSGSSGS 83 Score = 29.6 bits (65), Expect = 4.2 Identities = 19/79 (24%), Positives = 31/79 (39%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SSGS S+G Sbjct: 2 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 61 Query: 345 HPSTCSHHPASGSPDAASA 401 + +SGS ++ + Sbjct: 62 SSGSSGSSGSSGSSGSSGS 80 Score = 28.9 bits (63), Expect = 7.2 Identities = 19/80 (23%), Positives = 32/80 (40%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SSGS S+ Sbjct: 26 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSS 85 Query: 345 HPSTCSHHPASGSPDAASAR 404 S+ +SGS ++ ++ Sbjct: 86 SSSSNGSGSSSGSSQSSGSQ 105 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/79 (24%), Positives = 30/79 (37%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 SSG +S S + G +S + SSG++ SSGS S+G Sbjct: 17 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 76 Query: 345 HPSTCSHHPASGSPDAASA 401 + +S S + S+ Sbjct: 77 SSGSSGSSSSSSSNGSGSS 95
>SP96_DICDI (P14328) Spore coat protein SP96| Length = 600 Score = 31.6 bits (70), Expect = 1.1 Identities = 24/103 (23%), Positives = 33/103 (32%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAG 344 +SG ASSS P ASS+ SS + PSS + S+ Sbjct: 450 ASGSSAASSS---PSSSAASSSPSSSAASSSPSSSAASSSPSSSASSSSSPSSSASSSSA 506 Query: 345 HPSTCSHHPASGSPDAASARXXXXXXXXXXXXXXXTRHPAAIT 473 S+ S A S ++S+ AA T Sbjct: 507 PSSSASSSSAPSSSASSSSASSSSASSAATTAATTIATTAATT 549 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/95 (18%), Positives = 30/95 (31%) Frame = +3 Query: 183 ASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAGHPSTCS 362 ++S A G SSA SS + PSS + S+ S S Sbjct: 425 STSDSSALGSTSESSASGSSAVSSSASGSSAASSSPSSSAASSSPSSSAASSSPSSSAAS 484 Query: 363 HHPASGSPDAASARXXXXXXXXXXXXXXXTRHPAA 467 P+S + ++S + P++ Sbjct: 485 SSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSS 519
>HUNB_DROYA (O62541) Protein hunchback| Length = 759 Score = 31.2 bits (69), Expect = 1.4 Identities = 23/83 (27%), Positives = 34/83 (40%) Frame = +3 Query: 153 CPQRSSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSH 332 C SS + ++H A ASS SSG + + +S S+ Sbjct: 637 CSGTSSADESMETAHVAQANTSASSTASSSGNSSNASS---------------NGNSSSN 681 Query: 333 KSAGHPSTCSHHPASGSPDAASA 401 S+ S+ + PASG+P AA A Sbjct: 682 SSSNGTSSAAAAPASGTPAAAGA 704
>VIT2_CHICK (P02845) Vitellogenin-2 precursor (Vitellogenin II) (Major| vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I) (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II) (LVII); YGP40] Length = 1850 Score = 30.8 bits (68), Expect = 1.9 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 5/90 (5%) Frame = +3 Query: 147 ASCPQRSSGRQPASSSH---RAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHP 317 +S RSS +SSS+ + + +SS+ RS ++ Sbjct: 1200 SSSSSRSSSSSSSSSSNSKSSSSSSKSSSSSSRSRSSSKSSSSSSSSSSSSSSKSSSSRS 1259 Query: 318 SSGSHKSAGHPSTCSHHPA--SGSPDAASA 401 SS S KS+ H S SHH +GS ++S+ Sbjct: 1260 SSSSSKSSSHHSH-SHHSGHLNGSSSSSSS 1288 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/81 (23%), Positives = 31/81 (38%) Frame = +3 Query: 159 QRSSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKS 338 +RSS + SS + +SS+ RSS ++ S S KS Sbjct: 1180 KRSSSKSSNSSKRSSSSSSSSSSSSRSSSSSSSSSSNSKSSSSSSKSSSSSSRSRSSSKS 1239 Query: 339 AGHPSTCSHHPASGSPDAASA 401 + S+ S +S S + S+ Sbjct: 1240 SSSSSSSSSSSSSKSSSSRSS 1260
>CCW14_YEAST (O13547) Covalently-linked cell wall protein 14 precursor (Inner| cell wall protein) Length = 238 Score = 30.8 bits (68), Expect = 1.9 Identities = 24/124 (19%), Positives = 35/124 (28%), Gaps = 2/124 (1%) Frame = +3 Query: 36 ENXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXCRQPASCPQRSSGRQPASSSHRAPGRQ 215 +N S + +S ASSS AP Sbjct: 86 QNASLGDSSSSASSSASSSSKASSSTKASSSSASSSTKASSSSASSSTKASSSSAAPSSS 145 Query: 216 PASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGS--HKSAGHPSTCSHHPASGSPD 389 ASS + SS ++ + SS S H S+ ST S S + Sbjct: 146 KASSTESSSSSSSSTKAPSSEESSSTYVSSSKQASSTSEAHSSSAASSTVSQETVSSALP 205 Query: 390 AASA 401 ++A Sbjct: 206 TSTA 209
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 29.3 bits (64), Expect = 5.5 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 4/89 (4%) Frame = +3 Query: 147 ASCPQRSSGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSG 326 +S P SS S S + +SS+ SS ++ SS Sbjct: 141 SSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 200 Query: 327 SHKSAGH----PSTCSHHPASGSPDAASA 401 S S+ ST S H +S S ++S+ Sbjct: 201 SSSSSSSVPITSSTSSSHSSSSSSSSSSS 229
>RPTN_MOUSE (P97347) Repetin| Length = 1130 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/39 (43%), Positives = 17/39 (43%) Frame = +3 Query: 138 RQPASCPQRSSGRQPASSSHRAPGRQPASSAQRSSGTND 254 RQ S Q GRQ SS GRQ SS Q G D Sbjct: 432 RQDQSSHQGQKGRQDQSSHQGQKGRQDQSSHQGQKGRQD 470
>HRP1_PLAFA (P05227) Histidine-rich protein precursor (Clone PFHRP-II)| Length = 332 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/65 (20%), Positives = 26/65 (40%) Frame = +3 Query: 183 ASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSAGHPSTCS 362 A+ +H A A+ A ++ + H ++ +H +A H +T + Sbjct: 246 AADAHHATDAHHAADAHHATDAHHAADAHHAADAHHATDSHHAHHAADAHHAAAHHATDA 305 Query: 363 HHPAS 377 HH A+ Sbjct: 306 HHAAA 310
>ZDHC8_HUMAN (Q9ULC8) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 8) (DHHC-8) (Zinc finger protein 378) Length = 765 Score = 23.9 bits (50), Expect(2) = 8.7 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +3 Query: 165 SSGRQPASSSHRAPGRQPASSAQRS 239 SS Q +S APG +P+S + RS Sbjct: 643 SSSLQADQASSNAPGPRPSSGSHRS 667 Score = 23.1 bits (48), Expect(2) = 8.7 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 5/33 (15%) Frame = +3 Query: 315 PSSGSHKSAGH-----PSTCSHHPASGSPDAAS 398 PSSGSH+S P H P+ P A + Sbjct: 660 PSSGSHRSPARQGLPSPPGTPHSPSYAGPKAVA 692
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 28.5 bits (62), Expect = 9.4 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Frame = +3 Query: 168 SGRQPASSSHRAPGRQPASSAQRSSGTNDXXXXXXXXXXXXXXXXXXRHPSSGSHKSA-- 341 SG+ S H + +S Q SG++ RH SS H S+ Sbjct: 733 SGQSSRSEQHGSSSGLSSSYGQHGSGSHQSSGHGRQGSGSGHSPSRVRHGSSSGHSSSHG 792 Query: 342 --GHPSTCSH---HPASGSPDAA 395 G ++CS H SGS A+ Sbjct: 793 QHGSGTSCSSSCGHYESGSGQAS 815 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,424,619 Number of Sequences: 219361 Number of extensions: 322496 Number of successful extensions: 2045 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1773 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2005 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
