ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart27g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor 62 1e-09
2UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor 54 2e-07
3UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein... 46 6e-05
4GH38_ORYSA (Q7XIN9) Probable indole-3-acetic acid-amido syntheta... 32 0.87
5VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor 32 1.1
6NIFA_AZOCA (P09133) Nif-specific regulatory protein 31 2.5
7ZFNL1_ORYSA (Q5NAW2) Zinc finger CCCH type domain-containing pro... 30 5.6
8GPVI_HUMAN (Q9HCN6) Platelet glycoprotein VI precursor 29 7.4
9FBLN1_BRARE (O42182) Fibulin-1 precursor 29 9.6

>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor|
          Length = 286

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
 Frame = +3

Query: 207 SQGRYDAGTQYESGVDSVLTSLANSAPYAPYANITSPSALPPVAGLYQCRSDLAAAVCTG 386
           S G +   T Y + ++++L++L+N + +A Y N+T+      V G++ C  D+    C  
Sbjct: 37  SSGNFTRNTTYNTNLNTLLSTLSNQSSFANYYNLTTGLGSDTVHGMFLCIGDVNRTTCNA 96

Query: 387 CVRSAISRLSSLCSWSAGGAVQLRSCFVRYGNDSFVG----KPNT 509
           CV++A   ++  C+      +   SC VRY +  F+     KPNT
Sbjct: 97  CVKNATIEIAKNCTNHREAIIYYFSCMVRYSDKFFLSTLETKPNT 141



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>UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor|
          Length = 287

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 24/90 (26%), Positives = 47/90 (52%)
 Frame = +3

Query: 225 AGTQYESGVDSVLTSLANSAPYAPYANITSPSALPPVAGLYQCRSDLAAAVCTGCVRSAI 404
           + T Y   ++++L++L+N + +A Y N+T+  A   V G++ C  D+    C  CV++A 
Sbjct: 42  SNTTYNKNLNTLLSTLSNQSSFANYYNLTTGLASDTVHGMFLCTGDVNRTTCNACVKNAT 101

Query: 405 SRLSSLCSWSAGGAVQLRSCFVRYGNDSFV 494
             ++  C+      +    C VRY +  F+
Sbjct: 102 IEIAKNCTNHREAIIYNVDCMVRYSDKFFL 131



 Score = 32.3 bits (72), Expect = 0.87
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
 Frame = +3

Query: 207 SQGRYDAGTQYESGVDSVLTSLANSAPYAPY--ANITSPSALPPVAGLYQCRSDLAAAVC 380
           S G++      + G   V +SL +S+ + PY   + T    L  +  + QC  DL    C
Sbjct: 151 SFGKFGQRLSDKMGEVIVRSSLLSSS-FTPYYLMDTTRFDNLYDLESIVQCTPDLDPRNC 209

Query: 381 TGCVRSAISRLSSLCSWSAGGAVQLRSCFVRY 476
           T C++ A+  L+  C       +   +C V +
Sbjct: 210 TTCLKLALQELTECCGNQVWAFIYTPNCMVSF 241



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>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor|
          Length = 287

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
 Frame = +3

Query: 231 TQYESGVDSVLTSLANSAPYAPYANITSPSALPPVAGLYQCRSDLAAAVCTGCVRSAISR 410
           T Y   ++++L++  N +      N+T+  A   V G++ C  D+    C  CV++A   
Sbjct: 48  TTYNKNLNTMLSTFRNQSSIVNNYNLTTGLASDTVYGMFLCTGDVNITTCNNCVKNATIE 107

Query: 411 LSSLCSWSAGGAVQLRSCFVRYGNDSFVG----KPNT 509
           +   C+      +    C VRY +  F+     KPN+
Sbjct: 108 IVKNCTNHREAIIYYIDCMVRYSDKFFLSTFEKKPNS 144



 Score = 31.2 bits (69), Expect = 1.9
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +3

Query: 237 YESGVDSVLTSLANSAPYAPY--ANITSPSALPPVAGLYQCRSDLAAAVCTGCVRSAISR 410
           Y+   ++++ S   S+   PY   ++T       +  L QC   L    CT C+  A+  
Sbjct: 164 YKKMGEAIVRSSTLSSALTPYYYLDVTRFDGSYDLDSLVQCSPHLNPENCTICLEYALQE 223

Query: 411 LSSLCSWSAGGAVQLRSCFVRY 476
           +   CS      +   +CFV Y
Sbjct: 224 IIDCCSDKFWAMIFTPNCFVNY 245



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>GH38_ORYSA (Q7XIN9) Probable indole-3-acetic acid-amido synthetase GH3.8 (EC|
           6.3.2.-) (Auxin-responsive GH3-like protein 8) (OsGH3-8)
          Length = 605

 Score = 32.3 bits (72), Expect = 0.87
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +3

Query: 258 VLTSLANS-----APYAPYANITSPSALPPVAGLYQCRSDLAAAVCTGCVRSAISRLSSL 422
           VLTS   S      PY PY N TSP+A    A  +Q  S  A  VC  C R+ + RL ++
Sbjct: 179 VLTSYYKSDHFKNRPYDPYHNYTSPTAAILCADAFQ--SMYAQMVCGLCQRNDVLRLGAV 236



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>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor|
          Length = 866

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 18/163 (11%), Positives = 27/163 (16%)
 Frame = +1

Query: 19  THSVAPKIPVTTHKLSGXXXXXXXXXXXXXWLXXXXXXXXXXXXXXXXXXXXTTTRRSCT 198
           T +    +P T    +                                    TTT  + T
Sbjct: 167 TTTATTTVPTTASTTTDTTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTT 226

Query: 199 PAARRGATTPGRSTSRAWTPCSHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 378
            A    ATT   +TS A T  +                                      
Sbjct: 227 AATTTAATTTAATTSSATTAATTSSTTTAATTTAATTTAATTTAATTTAATTTAATTTAA 286

Query: 379 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTPSSGSRT 507
                                           T  T ++ + T
Sbjct: 287 TTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTT 329



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>NIFA_AZOCA (P09133) Nif-specific regulatory protein|
          Length = 615

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 496 PTKESFP*RTKHERSCTAPPADQEQREESLEMAERTQPVQTAAAR 362
           P  +S P       +C A P  Q ++E+ L+  ER+  VQ  AAR
Sbjct: 548 PAADSLPVTCPGTEACPAVPPRQSEKEQLLQAMERSGWVQAKAAR 592



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>ZFNL1_ORYSA (Q5NAW2) Zinc finger CCCH type domain-containing protein ZFN-like 1|
          Length = 476

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 192 VYAGCSQGRYDAGTQYESGVDSVLTSLANSAPYAPYANITSPSA 323
           V +G +Q    AG  Y  G     +++A   PY PYA+ T  S+
Sbjct: 253 VVSGGAQQNVQAGPVYGMGHHGSSSTIAYGGPYVPYASSTGQSS 296



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>GPVI_HUMAN (Q9HCN6) Platelet glycoprotein VI precursor|
          Length = 339

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
 Frame = +3

Query: 246 GVDSVLTSLANSAPYAPYANITSPSALPPVAGLYQCR----------SDLAAAVCTGCVR 395
           GVD       +S+ Y   A +  P+    +AG Y+C           SD    V TG   
Sbjct: 53  GVDLYRLEKLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFA 112

Query: 396 SAISRLSSLCSWSAGGAVQLRSCFVRYGNDSF 491
                     + S+GG V L+ C  RYG D F
Sbjct: 113 KPSLSAQPGPAVSSGGDVTLQ-CQTRYGFDQF 143



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>FBLN1_BRARE (O42182) Fibulin-1 precursor|
          Length = 681

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
 Frame = +3

Query: 252 DSVLTSLANSAPYAPYANITSPSALPPVAGLYQCRSDLAAAVCTGCV------RSAISRL 413
           DS+ TS  N A      + +S  AL  ++G   C +      C  C+      R  +S +
Sbjct: 69  DSICTSGINMAK-----DQSSCDAL--LSGSSTCETKTTKMCCECCLLGSSRCRIRVSPV 121

Query: 414 SSLCSWSAGGAVQLRSCFV 470
           SS+C WS      +RSC V
Sbjct: 122 SSVCRWSISRGPGVRSCCV 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.120    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,307,952
Number of Sequences: 219361
Number of extensions: 600385
Number of successful extensions: 2361
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2340
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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