ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart27f10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473015.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1134 Score = 123 bits (62), Expect = 5e-25 Identities = 233/287 (81%), Gaps = 6/287 (2%) Strand = Plus / Plus Query: 126 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 185 ||||||| |||||| ||||||||||||||||||| ||| | || ||| |||||||||||| Sbjct: 73 gatggcctgctgctcaacggcaacttcgagtaccagccgagcaagtcacagatgaacggc 132 Query: 186 acgagggtgacgggcgcgcacgccatcccctactggaaggccaccggccccgtggagtac 245 || ||||||| || | | |||| ||||| ||||||||| |||||| |||||||||| Sbjct: 133 acaagggtgatggcggagtacgcgatcccgtactggaagatcaccgggttcgtggagtac 192 Query: 246 gtcgagtccgggacggaccagccgggcgacggcatggtcctgccggtgccggagggcgcg 305 || ||||||| | || ||| ||||||| ||| | ||| ||||||| ||||||||| Sbjct: 193 atctcgtccggg-caga--agcagggcgac---atgctgctgacggtgccagagggcgcg 246 Query: 306 cacgccgtgcgcctcggcagcggcgcctccgtccggcagcagctcagcctcacccgcggc 365 ||||||||||| || |||| || |||||| || ||||||| ||||| | ||||| ||| Sbjct: 247 cacgccgtgcggctgggcaacgaggcctccatcgagcagcagatcagcgtgacccggggc 306 Query: 366 gcctgctactccgtcaccttcagcgccgcgcgcacctgcggccagtc 412 | ||||||| |||| |||||||||||||||||||||| |||||| Sbjct: 307 atgtactactccatcacattcagcgccgcgcgcacctgcgcccagtc 353
>dbj|AK110895.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A05, full insert sequence Length = 1499 Score = 123 bits (62), Expect = 5e-25 Identities = 233/287 (81%), Gaps = 6/287 (2%) Strand = Plus / Plus Query: 126 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 185 ||||||| |||||| ||||||||||||||||||| ||| | || ||| |||||||||||| Sbjct: 204 gatggcctgctgctcaacggcaacttcgagtaccagccgagcaagtcacagatgaacggc 263 Query: 186 acgagggtgacgggcgcgcacgccatcccctactggaaggccaccggccccgtggagtac 245 || ||||||| || | | |||| ||||| ||||||||| |||||| |||||||||| Sbjct: 264 acaagggtgatggcggagtacgcgatcccgtactggaagatcaccgggttcgtggagtac 323 Query: 246 gtcgagtccgggacggaccagccgggcgacggcatggtcctgccggtgccggagggcgcg 305 || ||||||| | || ||| ||||||| ||| | ||| ||||||| ||||||||| Sbjct: 324 atctcgtccggg-caga--agcagggcgac---atgctgctgacggtgccagagggcgcg 377 Query: 306 cacgccgtgcgcctcggcagcggcgcctccgtccggcagcagctcagcctcacccgcggc 365 ||||||||||| || |||| || |||||| || ||||||| ||||| | ||||| ||| Sbjct: 378 cacgccgtgcggctgggcaacgaggcctccatcgagcagcagatcagcgtgacccggggc 437 Query: 366 gcctgctactccgtcaccttcagcgccgcgcgcacctgcggccagtc 412 | ||||||| |||| |||||||||||||||||||||| |||||| Sbjct: 438 atgtactactccatcacattcagcgccgcgcgcacctgcgcccagtc 484
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 117 bits (59), Expect = 3e-23 Identities = 230/284 (80%), Gaps = 6/284 (2%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| |||||| ||||||||||||||||||| ||| | || ||| |||||||||||||| Sbjct: 24702564 ggcctgctgctcaacggcaacttcgagtaccagccgagcaagtcacagatgaacggcaca 24702623 Query: 189 agggtgacgggcgcgcacgccatcccctactggaaggccaccggccccgtggagtacgtc 248 ||||||| || | | |||| ||||| ||||||||| |||||| |||||||||| || Sbjct: 24702624 agggtgatggcggagtacgcgatcccgtactggaagatcaccgggttcgtggagtacatc 24702683 Query: 249 gagtccgggacggaccagccgggcgacggcatggtcctgccggtgccggagggcgcgcac 308 ||||||| | || ||| ||||||| ||| | ||| ||||||| |||||||||||| Sbjct: 24702684 tcgtccggg-caga--agcagggcgac---atgctgctgacggtgccagagggcgcgcac 24702737 Query: 309 gccgtgcgcctcggcagcggcgcctccgtccggcagcagctcagcctcacccgcggcgcc 368 |||||||| || |||| || |||||| || ||||||| ||||| | ||||| ||| Sbjct: 24702738 gccgtgcggctgggcaacgaggcctccatcgagcagcagatcagcgtgacccggggcatg 24702797 Query: 369 tgctactccgtcaccttcagcgccgcgcgcacctgcggccagtc 412 | ||||||| |||| |||||||||||||||||||||| |||||| Sbjct: 24702798 tactactccatcacattcagcgccgcgcgcacctgcgcccagtc 24702841 Score = 95.6 bits (48), Expect = 1e-16 Identities = 117/140 (83%) Strand = Plus / Plus Query: 278 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 337 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 24720449 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 24720508 Query: 338 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcg 397 || ||||| ||||| ||| || || || ||||||||||||||||||||| ||||| Sbjct: 24720509 ccagcagcggctcaccctgacgcggggaatgcactactccgtcaccttcagcgcggcgcg 24720568 Query: 398 cacctgcggccagtcggagc 417 |||||||| |||||| |||| Sbjct: 24720569 cacctgcgcccagtccgagc 24720588 Score = 89.7 bits (45), Expect = 8e-15 Identities = 111/133 (83%) Strand = Plus / Plus Query: 278 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 337 |||| ||||| ||||||||||||||||| ||||||||||||| |||| || ||| || | Sbjct: 24727302 catgatcctggcggtgccggagggcgcgtacgccgtgcgcctgggcaacgacgcaaccat 24727361 Query: 338 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcg 397 |||||||| | ||||| ||||||| | | |||||| ||||| |||||||||||||| Sbjct: 24727362 ccggcagcggatcagcgtcacccgtcacatgtactactctgtcacattcagcgccgcgcg 24727421 Query: 398 cacctgcggccag 410 |||||||| |||| Sbjct: 24727422 cacctgcgcccag 24727434 Score = 73.8 bits (37), Expect = 4e-10 Identities = 109/133 (81%) Strand = Plus / Plus Query: 278 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 337 |||| ||||| |||||||||||||||||| ||||||||| | |||| || |||| || | Sbjct: 24722654 catgatcctggcggtgccggagggcgcgcgcgccgtgcgattgggcaacgacgccaccat 24722713 Query: 338 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcg 397 ||||||| ||| ||| | || || |||| | ||||||| |||| |||||||| ||||| Sbjct: 24722714 ccggcagaggcttagcgtgacgcggcgcgcttactactccatcactttcagcgcggcgcg 24722773 Query: 398 cacctgcggccag 410 |||||||| |||| Sbjct: 24722774 cacctgcgcccag 24722786 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 278 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 337 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 24716733 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 24716792 Query: 338 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcg 397 || ||||| ||| | ||| || || || ||||||| |||| |||||||| ||||| Sbjct: 24716793 ccagcagcggcttaccctgacgcggggaatgcactactccatcacattcagcgcggcgcg 24716852 Query: 398 cacctgcggccagtcggagc 417 |||||||| |||||| |||| Sbjct: 24716853 cacctgcgcccagtccgagc 24716872 Score = 69.9 bits (35), Expect = 7e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| ||||| ||| |||||||||||| | |||| ||| ||||||||||||||||||| Sbjct: 24716590 ggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggcacg 24716649 Query: 189 agggtgacggg 199 ||||||||||| Sbjct: 24716650 agggtgacggg 24716660 Score = 46.1 bits (23), Expect = 0.10 Identities = 56/67 (83%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| ||||| ||| ||||| |||||| | |||| ||| ||||||| ||||||||||| Sbjct: 24720306 ggcctgctgccgaatggcaatttcgaggaggcgccggacaagtcgcagctgaacggcacg 24720365 Query: 189 agggtga 195 ||||||| Sbjct: 24720366 agggtga 24720372 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 302 cgcgcacgccgtgcgcctcggc 323 |||||||||||||||||||||| Sbjct: 4612817 cgcgcacgccgtgcgcctcggc 4612796
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 117 bits (59), Expect = 3e-23 Identities = 230/284 (80%), Gaps = 6/284 (2%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| |||||| ||||||||||||||||||| ||| | || ||| |||||||||||||| Sbjct: 92087 ggcctgctgctcaacggcaacttcgagtaccagccgagcaagtcacagatgaacggcaca 92146 Query: 189 agggtgacgggcgcgcacgccatcccctactggaaggccaccggccccgtggagtacgtc 248 ||||||| || | | |||| ||||| ||||||||| |||||| |||||||||| || Sbjct: 92147 agggtgatggcggagtacgcgatcccgtactggaagatcaccgggttcgtggagtacatc 92206 Query: 249 gagtccgggacggaccagccgggcgacggcatggtcctgccggtgccggagggcgcgcac 308 ||||||| | || ||| ||||||| ||| | ||| ||||||| |||||||||||| Sbjct: 92207 tcgtccggg-caga--agcagggcgac---atgctgctgacggtgccagagggcgcgcac 92260 Query: 309 gccgtgcgcctcggcagcggcgcctccgtccggcagcagctcagcctcacccgcggcgcc 368 |||||||| || |||| || |||||| || ||||||| ||||| | ||||| ||| Sbjct: 92261 gccgtgcggctgggcaacgaggcctccatcgagcagcagatcagcgtgacccggggcatg 92320 Query: 369 tgctactccgtcaccttcagcgccgcgcgcacctgcggccagtc 412 | ||||||| |||| |||||||||||||||||||||| |||||| Sbjct: 92321 tactactccatcacattcagcgccgcgcgcacctgcgcccagtc 92364 Score = 95.6 bits (48), Expect = 1e-16 Identities = 117/140 (83%) Strand = Plus / Plus Query: 278 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 337 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 109972 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 110031 Query: 338 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcg 397 || ||||| ||||| ||| || || || ||||||||||||||||||||| ||||| Sbjct: 110032 ccagcagcggctcaccctgacgcggggaatgcactactccgtcaccttcagcgcggcgcg 110091 Query: 398 cacctgcggccagtcggagc 417 |||||||| |||||| |||| Sbjct: 110092 cacctgcgcccagtccgagc 110111 Score = 89.7 bits (45), Expect = 8e-15 Identities = 111/133 (83%) Strand = Plus / Plus Query: 278 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 337 |||| ||||| ||||||||||||||||| ||||||||||||| |||| || ||| || | Sbjct: 116825 catgatcctggcggtgccggagggcgcgtacgccgtgcgcctgggcaacgacgcaaccat 116884 Query: 338 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcg 397 |||||||| | ||||| ||||||| | | |||||| ||||| |||||||||||||| Sbjct: 116885 ccggcagcggatcagcgtcacccgtcacatgtactactctgtcacattcagcgccgcgcg 116944 Query: 398 cacctgcggccag 410 |||||||| |||| Sbjct: 116945 cacctgcgcccag 116957 Score = 73.8 bits (37), Expect = 4e-10 Identities = 109/133 (81%) Strand = Plus / Plus Query: 278 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 337 |||| ||||| |||||||||||||||||| ||||||||| | |||| || |||| || | Sbjct: 112177 catgatcctggcggtgccggagggcgcgcgcgccgtgcgattgggcaacgacgccaccat 112236 Query: 338 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcg 397 ||||||| ||| ||| | || || |||| | ||||||| |||| |||||||| ||||| Sbjct: 112237 ccggcagaggcttagcgtgacgcggcgcgcttactactccatcactttcagcgcggcgcg 112296 Query: 398 cacctgcggccag 410 |||||||| |||| Sbjct: 112297 cacctgcgcccag 112309 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 278 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 337 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 106256 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 106315 Query: 338 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcg 397 || ||||| ||| | ||| || || || ||||||| |||| |||||||| ||||| Sbjct: 106316 ccagcagcggcttaccctgacgcggggaatgcactactccatcacattcagcgcggcgcg 106375 Query: 398 cacctgcggccagtcggagc 417 |||||||| |||||| |||| Sbjct: 106376 cacctgcgcccagtccgagc 106395 Score = 69.9 bits (35), Expect = 7e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| ||||| ||| |||||||||||| | |||| ||| ||||||||||||||||||| Sbjct: 106113 ggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggcacg 106172 Query: 189 agggtgacggg 199 ||||||||||| Sbjct: 106173 agggtgacggg 106183 Score = 46.1 bits (23), Expect = 0.10 Identities = 56/67 (83%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| ||||| ||| ||||| |||||| | |||| ||| ||||||| ||||||||||| Sbjct: 109829 ggcctgctgccgaatggcaatttcgaggaggcgccggacaagtcgcagctgaacggcacg 109888 Query: 189 agggtga 195 ||||||| Sbjct: 109889 agggtga 109895
>ref|NM_192744.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 97.6 bits (49), Expect = 3e-17 Identities = 112/133 (84%) Strand = Plus / Plus Query: 290 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 349 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 234 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 293 Query: 350 cagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcgcacctgcggcca 409 | | | ||| | ||||||| |||| ||||||| || ||||| ||||||||||||| ||| Sbjct: 294 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcgcacctgcgccca 353 Query: 410 gtcggagcggctc 422 | |||||| |||| Sbjct: 354 ggcggagcagctc 366
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 97.6 bits (49), Expect = 3e-17 Identities = 112/133 (84%) Strand = Plus / Plus Query: 290 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 349 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 24178753 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 24178812 Query: 350 cagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcgcacctgcggcca 409 | | | ||| | ||||||| |||| ||||||| || ||||| ||||||||||||| ||| Sbjct: 24178813 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcgcacctgcgccca 24178872 Query: 410 gtcggagcggctc 422 | |||||| |||| Sbjct: 24178873 ggcggagcagctc 24178885 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 ccgtcgtccccgtcgacgccgccg 453 ||||||||||| |||||||||||| Sbjct: 3780680 ccgtcgtccccctcgacgccgccg 3780703
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 97.6 bits (49), Expect = 3e-17 Identities = 112/133 (84%) Strand = Plus / Plus Query: 290 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 349 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 154575 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 154634 Query: 350 cagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcgcacctgcggcca 409 | | | ||| | ||||||| |||| ||||||| || ||||| ||||||||||||| ||| Sbjct: 154635 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcgcacctgcgccca 154694 Query: 410 gtcggagcggctc 422 | |||||| |||| Sbjct: 154695 ggcggagcagctc 154707
>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046B10 Length = 142596 Score = 97.6 bits (49), Expect = 3e-17 Identities = 112/133 (84%) Strand = Plus / Plus Query: 290 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 349 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 3317 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 3376 Query: 350 cagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcgcacctgcggcca 409 | | | ||| | ||||||| |||| ||||||| || ||||| ||||||||||||| ||| Sbjct: 3377 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcgcacctgcgccca 3436 Query: 410 gtcggagcggctc 422 | |||||| |||| Sbjct: 3437 ggcggagcagctc 3449
>dbj|AK105921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A04, full insert sequence Length = 1474 Score = 97.6 bits (49), Expect = 3e-17 Identities = 112/133 (84%) Strand = Plus / Plus Query: 290 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 349 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 222 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 281 Query: 350 cagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcgcacctgcggcca 409 | | | ||| | ||||||| |||| ||||||| || ||||| ||||||||||||| ||| Sbjct: 282 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcgcacctgcgccca 341 Query: 410 gtcggagcggctc 422 | |||||| |||| Sbjct: 342 ggcggagcagctc 354
>dbj|AK100501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099J05, full insert sequence Length = 3062 Score = 97.6 bits (49), Expect = 3e-17 Identities = 112/133 (84%) Strand = Plus / Plus Query: 290 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 349 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 351 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 410 Query: 350 cagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcgcacctgcggcca 409 | | | ||| | ||||||| |||| ||||||| || ||||| ||||||||||||| ||| Sbjct: 411 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcgcacctgcgccca 470 Query: 410 gtcggagcggctc 422 | |||||| |||| Sbjct: 471 ggcggagcagctc 483
>dbj|AK072500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H12, full insert sequence Length = 1690 Score = 97.6 bits (49), Expect = 3e-17 Identities = 112/133 (84%) Strand = Plus / Plus Query: 290 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 349 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 351 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 410 Query: 350 cagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcgcacctgcggcca 409 | | | ||| | ||||||| |||| ||||||| || ||||| ||||||||||||| ||| Sbjct: 411 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcgcacctgcgccca 470 Query: 410 gtcggagcggctc 422 | |||||| |||| Sbjct: 471 ggcggagcagctc 483
>dbj|AK060682.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E10, full insert sequence Length = 1597 Score = 97.6 bits (49), Expect = 3e-17 Identities = 112/133 (84%) Strand = Plus / Plus Query: 290 ggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgtccggcagcagct 349 ||||||| ||||||||||||||||||||||||||| || || ||| ||||||||| ||| Sbjct: 347 ggtgccgcagggcgcgcacgccgtgcgcctcggcaacgaggcgtccatccggcagcggct 406 Query: 350 cagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcgcacctgcggcca 409 | | | ||| | ||||||| |||| ||||||| || ||||| ||||||||||||| ||| Sbjct: 407 cgccgtgaccaggggcgcctactacgccgtcacgtttagcgcggcgcgcacctgcgccca 466 Query: 410 gtcggagcggctc 422 | |||||| |||| Sbjct: 467 ggcggagcagctc 479
>ref|XM_473019.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1116 Score = 95.6 bits (48), Expect = 1e-16 Identities = 117/140 (83%) Strand = Plus / Plus Query: 278 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 337 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 222 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 281 Query: 338 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcg 397 || ||||| ||||| ||| || || || ||||||||||||||||||||| ||||| Sbjct: 282 ccagcagcggctcaccctgacgcggggaatgcactactccgtcaccttcagcgcggcgcg 341 Query: 398 cacctgcggccagtcggagc 417 |||||||| |||||| |||| Sbjct: 342 cacctgcgcccagtccgagc 361 Score = 46.1 bits (23), Expect = 0.10 Identities = 56/67 (83%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| ||||| ||| ||||| |||||| | |||| ||| ||||||| ||||||||||| Sbjct: 79 ggcctgctgccgaatggcaatttcgaggaggcgccggacaagtcgcagctgaacggcacg 138 Query: 189 agggtga 195 ||||||| Sbjct: 139 agggtga 145
>dbj|AK073892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076M24, full insert sequence Length = 1599 Score = 95.6 bits (48), Expect = 1e-16 Identities = 117/140 (83%) Strand = Plus / Plus Query: 278 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 337 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 343 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 402 Query: 338 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcg 397 || ||||| ||||| ||| || || || ||||||||||||||||||||| ||||| Sbjct: 403 ccagcagcggctcaccctgacgcggggaatgcactactccgtcaccttcagcgcggcgcg 462 Query: 398 cacctgcggccagtcggagc 417 |||||||| |||||| |||| Sbjct: 463 cacctgcgcccagtccgagc 482 Score = 46.1 bits (23), Expect = 0.10 Identities = 56/67 (83%) Strand = Plus / Plus Query: 129 ggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggcacg 188 |||| ||||| ||| ||||| |||||| | |||| ||| ||||||| ||||||||||| Sbjct: 200 ggcctgctgccgaatggcaatttcgaggaggcgccggacaagtcgcagctgaacggcacg 259 Query: 189 agggtga 195 ||||||| Sbjct: 260 agggtga 266
>ref|XM_473018.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 126 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 185 ||||||| ||||| ||| |||||||||||| | |||| ||| |||||||||||||||| Sbjct: 82 gatggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggc 141 Query: 186 acgagggtgacggg 199 |||||||||||||| Sbjct: 142 acgagggtgacggg 155 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 278 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 337 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 228 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 287 Query: 338 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcg 397 || ||||| ||| | ||| || || || ||||||| |||| |||||||| ||||| Sbjct: 288 ccagcagcggcttaccctgacgcggggaatgcactactccatcacattcagcgcggcgcg 347 Query: 398 cacctgcggccagtcggagc 417 |||||||| |||||| |||| Sbjct: 348 cacctgcgcccagtccgagc 367
>dbj|AK072539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133J23, full insert sequence Length = 1588 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 126 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 185 ||||||| ||||| ||| |||||||||||| | |||| ||| |||||||||||||||| Sbjct: 486 gatggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggc 545 Query: 186 acgagggtgacggg 199 |||||||||||||| Sbjct: 546 acgagggtgacggg 559 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 278 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 337 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 632 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 691 Query: 338 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcg 397 || ||||| ||| | ||| || || || ||||||| |||| |||||||| ||||| Sbjct: 692 ccagcagcggcttaccctgacgcggggaatgcactactccatcacattcagcgcggcgcg 751 Query: 398 cacctgcggccagtcggagc 417 |||||||| |||||| |||| Sbjct: 752 cacctgcgcccagtccgagc 771
>dbj|AK063925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C04, full insert sequence Length = 1517 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 126 gatggcccgctgctgaacggcaacttcgagtacccgcccaacaggtcgcagatgaacggc 185 ||||||| ||||| ||| |||||||||||| | |||| ||| |||||||||||||||| Sbjct: 195 gatggcctgctgccgaatggcaacttcgaggaggcgccggacaagtcgcagatgaacggc 254 Query: 186 acgagggtgacggg 199 |||||||||||||| Sbjct: 255 acgagggtgacggg 268 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Plus Query: 278 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 337 |||| ||||||||||||||||||||||| |||||||||| || |||| || |||||| | Sbjct: 341 catgctcctgccggtgccggagggcgcgtacgccgtgcggctgggcaacgaggcctccat 400 Query: 338 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcg 397 || ||||| ||| | ||| || || || ||||||| |||| |||||||| ||||| Sbjct: 401 ccagcagcggcttaccctgacgcggggaatgcactactccatcacattcagcgcggcgcg 460 Query: 398 cacctgcggccagtcggagc 417 |||||||| |||||| |||| Sbjct: 461 cacctgcgcccagtccgagc 480
>ref|XM_473020.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 73.8 bits (37), Expect = 4e-10 Identities = 109/133 (81%) Strand = Plus / Plus Query: 278 catggtcctgccggtgccggagggcgcgcacgccgtgcgcctcggcagcggcgcctccgt 337 |||| ||||| |||||||||||||||||| ||||||||| | |||| || |||| || | Sbjct: 228 catgatcctggcggtgccggagggcgcgcgcgccgtgcgattgggcaacgacgccaccat 287 Query: 338 ccggcagcagctcagcctcacccgcggcgcctgctactccgtcaccttcagcgccgcgcg 397 ||||||| ||| ||| | || || |||| | ||||||| |||| |||||||| ||||| Sbjct: 288 ccggcagaggcttagcgtgacgcggcgcgcttactactccatcactttcagcgcggcgcg 347 Query: 398 cacctgcggccag 410 |||||||| |||| Sbjct: 348 cacctgcgcccag 360
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 391 ccgcgcgcacctgcggccagtcg 413 ||||||||||||||||||||||| Sbjct: 2868721 ccgcgcgcacctgcggccagtcg 2868743 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 cagcgccgcgcgcacctgcg 405 |||||||||||||||||||| Sbjct: 4714801 cagcgccgcgcgcacctgcg 4714820
>ref|XM_474601.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1014 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 302 cgcgcacgccgtgcgcctcggc 323 |||||||||||||||||||||| Sbjct: 153 cgcgcacgccgtgcgcctcggc 174
>emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence Length = 129608 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 302 cgcgcacgccgtgcgcctcggc 323 |||||||||||||||||||||| Sbjct: 3111 cgcgcacgccgtgcgcctcggc 3090
>emb|AL662949.4|OSJN00144 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0115I21, complete sequence Length = 127162 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 302 cgcgcacgccgtgcgcctcggc 323 |||||||||||||||||||||| Sbjct: 4661 cgcgcacgccgtgcgcctcggc 4682
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 61 gcgcgcgctgcgtcgccgcgct 82 |||||||||||||||||||||| Sbjct: 2830369 gcgcgcgctgcgtcgccgcgct 2830348 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 cgacgccgccgacgcgcccg 462 |||||||||||||||||||| Sbjct: 2068878 cgacgccgccgacgcgcccg 2068859
>dbj|AK108398.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F12, full insert sequence Length = 1181 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 302 cgcgcacgccgtgcgcctcggc 323 |||||||||||||||||||||| Sbjct: 197 cgcgcacgccgtgcgcctcggc 218
>gb|AY005800.2| Rhodovulum sulfidophilum sulfur compounds oxidation operon, complete sequence; and SoxR (soxR) and SoxS (soxS) genes, complete cds Length = 10950 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 tcagcgccgcgcgcacctgc 404 |||||||||||||||||||| Sbjct: 10611 tcagcgccgcgcgcacctgc 10592
>ref|NM_191581.1| Oryza sativa (japonica cultivar-group), mRNA Length = 648 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 ccgtcgtccccgtcgacgccgccg 453 ||||||||||| |||||||||||| Sbjct: 440 ccgtcgtccccctcgacgccgccg 463
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 cggcgcctccgtccggcagcagct 349 ||||||| |||||||||||||||| Sbjct: 1818641 cggcgccgccgtccggcagcagct 1818618
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 tactccgtcaccttcagcgccgcg 395 ||||||||||||| |||||||||| Sbjct: 3737627 tactccgtcacctacagcgccgcg 3737650
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 gcgcgcgctgcgtcgccgcgctgc 84 |||||||||||| ||||||||||| Sbjct: 2483670 gcgcgcgctgcggcgccgcgctgc 2483647
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 gcgcgcgctgcgtcgccgcgctgc 84 |||||||||||| ||||||||||| Sbjct: 3701944 gcgcgcgctgcggcgccgcgctgc 3701967
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 tcgatcgccagaagcggaga 36 |||||||||||||||||||| Sbjct: 4107056 tcgatcgccagaagcggaga 4107037
>ref|XM_389802.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09626.1) partial mRNA Length = 1386 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 cgtcgtccccgtcgacgccgccga 454 ||||||||| |||||||||||||| Sbjct: 1306 cgtcgtcccagtcgacgccgccga 1283
>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0090F16, complete sequence Length = 147341 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 430 ccgtcgtccccgtcgacgccgccg 453 |||||||| ||||||||||||||| Sbjct: 118901 ccgtcgtcgccgtcgacgccgccg 118878
>gb|BT009135.1| Triticum aestivum clone wl1n.pk0038.e3:fis, full insert mRNA sequence Length = 659 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 307 acgccgtgcgcctcggcagcggcgcctc 334 ||||||| ||||||||||||| |||||| Sbjct: 460 acgccgtccgcctcggcagcgtcgcctc 487
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 gtgccggagggcgcgcacgc 310 |||||||||||||||||||| Sbjct: 107009 gtgccggagggcgcgcacgc 107028
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 gtgccggagggcgcgcacgc 310 |||||||||||||||||||| Sbjct: 26246 gtgccggagggcgcgcacgc 26265
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 gtgccggagggcgcgcacgc 310 |||||||||||||||||||| Sbjct: 13245 gtgccggagggcgcgcacgc 13264
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 gcgcgcgctgcgtcgccgcgctgc 84 |||||||||||| ||||||||||| Sbjct: 3442257 gcgcgcgctgcggcgccgcgctgc 3442280
>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster Length = 84985 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 430 ccgtcgtccccgtcgacgccgccg 453 ||||||||||||||||| |||||| Sbjct: 59754 ccgtcgtccccgtcgacaccgccg 59731
>emb|AJ132221.1|SNA132221 Streptomyces natalensis pimS0 gene Length = 5544 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 430 ccgtcgtccccgtcgacgccgccg 453 ||||||||||||||||| |||||| Sbjct: 5446 ccgtcgtccccgtcgacaccgccg 5423
>dbj|AB187026.1| Triticum aestivum CHI gene for chalcone isomerase, partial cds Length = 394 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 cctactggaaggccaccggc 233 |||||||||||||||||||| Sbjct: 36 cctactggaaggccaccggc 55
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 ccgtcgtccccgtcgacgccgccg 453 |||||||| ||||||||||||||| Sbjct: 24703587 ccgtcgtcgccgtcgacgccgccg 24703610
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gggtgacgggcgcgcacgcc 209 |||||||||||||||||||| Sbjct: 2566383 gggtgacgggcgcgcacgcc 2566364
>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0089K24 Length = 154137 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 ccgtcgtccccgtcgacgccgccg 453 ||||||||||| |||||||||||| Sbjct: 54222 ccgtcgtccccctcgacgccgccg 54245
>gb|AY104432.1| Zea mays PCO120449 mRNA sequence Length = 2218 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 307 acgccgtgcgcctcggcagcggcgcctc 334 ||||||| ||||||||||||| |||||| Sbjct: 1898 acgccgtccgcctcggcagcgtcgcctc 1925
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 gcgcgcgctgcgtcgccgcgctgc 84 |||||||||||| ||||||||||| Sbjct: 1419171 gcgcgcgctgcggcgccgcgctgc 1419148
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 ccgtcgtccccgtcgacgccgccg 453 |||||||| ||||||||||||||| Sbjct: 25015257 ccgtcgtcgccgtcgacgccgccg 25015280 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,406,756 Number of Sequences: 3902068 Number of extensions: 2406756 Number of successful extensions: 66801 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63914 Number of HSP's gapped (non-prelim): 2876 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
