ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart27e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VE2_HPV1A (P03118) Regulatory protein E2 29 4.0
2CYB_XENLA (P00160) Cytochrome b 28 5.2
3WBP1_MOUSE (P97764) WW domain-binding protein 1 (WBP-1) 28 6.8
4WBP1_HUMAN (Q96G27) WW domain-binding protein 1 (WBP-1) 28 6.8
5TXP10_PLETR (P36990) Plectoxin-10 (Plectoxin X) (PLT-X) (PLTX) 28 8.9

>VE2_HPV1A (P03118) Regulatory protein E2|
          Length = 401

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 83  QRSTTPRGGCSQEGVSTTSDRPGA 154
           +RS +PRGG  +EG ST S  PG+
Sbjct: 263 RRSRSPRGGGRREGESTPSRTPGS 286



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>CYB_XENLA (P00160) Cytochrome b|
          Length = 380

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 20  HHVLPCLPRGAATLVQLHLHEQRSTTPRG 106
           H +LP +  GA+ L  L LHE  ST P G
Sbjct: 183 HFLLPFIIAGASILHLLFLHETGSTNPTG 211



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>WBP1_MOUSE (P97764) WW domain-binding protein 1 (WBP-1)|
          Length = 304

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 137 MWWILLLGNSLL*VSCCAAHGDGAAQE*QRHEEDKGGHGVLAQHG 3
           +WW  LL   L+  SCC A     A+   + ++ +    +LA HG
Sbjct: 91  LWWFWLLWTVLILFSCCCAFRHRRAKLRLQQQQRQREINLLAYHG 135



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>WBP1_HUMAN (Q96G27) WW domain-binding protein 1 (WBP-1)|
          Length = 269

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 137 MWWILLLGNSLL*VSCCAAHGDGAAQE*QRHEEDKGGHGVLAQHG 3
           +WW  LL   L+  SCC A     A+   + ++ +    +LA HG
Sbjct: 56  LWWFWLLWTVLILFSCCCAFRHRRAKLRLQQQQRQREINLLAYHG 100



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>TXP10_PLETR (P36990) Plectoxin-10 (Plectoxin X) (PLT-X) (PLTX)|
          Length = 49

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 99 GVVLRCSWRWSCTRVAAPRGRQGRTWCSCAAW 4
          G +++C     C + A  +G++ +  C C AW
Sbjct: 4  GFLVKCDSNSECCKTAIVKGKKKQLSCLCGAW 35


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,223,663
Number of Sequences: 219361
Number of extensions: 406597
Number of successful extensions: 2460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2460
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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