ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart26e04 |
|---|---|
| Clone Library Name | barley_pub |
>RL7A_ORYSA (P35685) 60S ribosomal protein L7a| Length = 258 Score = 238 bits (608), Expect = 7e-63 Identities = 120/140 (85%), Positives = 121/140 (86%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKRPKQFGIGGALPPKKDLHRFVKWP PPAL+QFTRTLD Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81 Query: 329 KNLATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ 508 KNLATNLFKMLLKYRPEDK AKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ Sbjct: 82 KNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ 141 Query: 509 SKAQLVVIAHDVDPIELVVW 568 SKAQLVVIAHDVDPIELVVW Sbjct: 142 SKAQLVVIAHDVDPIELVVW 161
>RL7A_ARATH (P49692) 60S ribosomal protein L7a| Length = 257 Score = 219 bits (557), Expect = 6e-57 Identities = 107/140 (76%), Positives = 118/140 (84%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFE+RPKQFGIGGALPPKKDL R++KWP PPAL+QFT+TLD Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80 Query: 329 KNLATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ 508 KNLAT+LFK+LLKYRPEDK AKKERL+K+AQAEAEGK E+KKPIVVKYGLNHVTYLIEQ Sbjct: 81 KNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIEQ 140 Query: 509 SKAQLVVIAHDVDPIELVVW 568 +KAQLVVIAHDVDPIELVVW Sbjct: 141 NKAQLVVIAHDVDPIELVVW 160
>RL7A_DROME (P46223) 60S ribosomal protein L7a| Length = 271 Score = 151 bits (381), Expect = 1e-36 Identities = 81/141 (57%), Positives = 95/141 (67%), Gaps = 1/141 (0%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 N LFEKRPK FGIG + PK+DL RFV+WP PP +HQF++TLD Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93 Query: 329 KNLATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGKTVE-AKKPIVVKYGLNHVTYLIE 505 K A LFK+L KYRPE +AKK RL K A+A+A+GK VE KKP V G N VT LIE Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153 Query: 506 QSKAQLVVIAHDVDPIELVVW 568 Q KAQLVVIAHDVDP+ELV++ Sbjct: 154 QKKAQLVVIAHDVDPLELVLF 174
>RL7A_RAT (P62425) 60S ribosomal protein L7a| Length = 265 Score = 150 bits (379), Expect = 2e-36 Identities = 79/141 (56%), Positives = 95/141 (67%), Gaps = 1/141 (0%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKRPK FGIG + PK+DL RFVKWP PPA++QFT+ LD Sbjct: 28 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 87 Query: 329 KNLATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIE 505 + AT L K+ KYRPE K KK+RLL RA+ +A GK V K+P V++ G+N VT L+E Sbjct: 88 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 147 Query: 506 QSKAQLVVIAHDVDPIELVVW 568 KAQLVVIAHDVDPIELVV+ Sbjct: 148 NKKAQLVVIAHDVDPIELVVF 168
>RL7A_MOUSE (P12970) 60S ribosomal protein L7a (Surfeit locus protein 3)| Length = 265 Score = 150 bits (379), Expect = 2e-36 Identities = 79/141 (56%), Positives = 95/141 (67%), Gaps = 1/141 (0%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKRPK FGIG + PK+DL RFVKWP PPA++QFT+ LD Sbjct: 28 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 87 Query: 329 KNLATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIE 505 + AT L K+ KYRPE K KK+RLL RA+ +A GK V K+P V++ G+N VT L+E Sbjct: 88 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 147 Query: 506 QSKAQLVVIAHDVDPIELVVW 568 KAQLVVIAHDVDPIELVV+ Sbjct: 148 NKKAQLVVIAHDVDPIELVVF 168
>RL7A_HUMAN (P62424) 60S ribosomal protein L7a (Surfeit locus protein 3) (PLA-X| polypeptide) Length = 265 Score = 150 bits (379), Expect = 2e-36 Identities = 79/141 (56%), Positives = 95/141 (67%), Gaps = 1/141 (0%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKRPK FGIG + PK+DL RFVKWP PPA++QFT+ LD Sbjct: 28 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 87 Query: 329 KNLATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIE 505 + AT L K+ KYRPE K KK+RLL RA+ +A GK V K+P V++ G+N VT L+E Sbjct: 88 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVE 147 Query: 506 QSKAQLVVIAHDVDPIELVVW 568 KAQLVVIAHDVDPIELVV+ Sbjct: 148 NKKAQLVVIAHDVDPIELVVF 168
>RL7A_ICTPU (Q90YW2) 60S ribosomal protein L7a| Length = 265 Score = 150 bits (378), Expect = 3e-36 Identities = 79/141 (56%), Positives = 94/141 (66%), Gaps = 1/141 (0%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKRPK FGIG + PK+DL RFVKWP PPA++QF + LD Sbjct: 28 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYVRLQRHGSILYKRLKVPPAINQFNQALD 87 Query: 329 KNLATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIE 505 + AT LFK+ KYRPE K KK RLL RA+ +A GK V K+P VV+ G+N VT L+E Sbjct: 88 RQTATQLFKLAHKYRPETKQEKKRRLLARAEQKAAGKGDVPTKRPPVVRAGVNTVTSLVE 147 Query: 506 QSKAQLVVIAHDVDPIELVVW 568 KAQLVVIAHDVDPIELV++ Sbjct: 148 SKKAQLVVIAHDVDPIELVLF 168
>RL7A_FUGRU (O57592) 60S ribosomal protein L7a (Surfeit locus protein 3)| Length = 265 Score = 150 bits (378), Expect = 3e-36 Identities = 77/141 (54%), Positives = 95/141 (67%), Gaps = 1/141 (0%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKRPK FGIG + PK+DL RFVKWP PPA++QFT+ LD Sbjct: 28 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRSILYKRLKVPPAINQFTQALD 87 Query: 329 KNLATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIE 505 + AT LFK+ KYRPE K KK+RLL RA+ +A GK K+P V++ G+N +T L+E Sbjct: 88 RQTATQLFKLAHKYRPETKQEKKKRLLARAEQKAAGKGDAPTKRPPVLRAGVNTITSLVE 147 Query: 506 QSKAQLVVIAHDVDPIELVVW 568 KAQLVVIAHDVDPIELV++ Sbjct: 148 NKKAQLVVIAHDVDPIELVIF 168
>RL8_SCHPO (O13672) 60S ribosomal protein L8 (L7A) (L4)| Length = 258 Score = 149 bits (375), Expect = 7e-36 Identities = 78/142 (54%), Positives = 94/142 (66%), Gaps = 2/142 (1%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLF RP+ FGIG + PK+DL RFVKWP PPA+ QF +TLD Sbjct: 23 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 82 Query: 329 KNLATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLI 502 KN AT +FK+L KYRPE KK+RL+ A+A A GK+ + +KKP VKYGLNHV LI Sbjct: 83 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 142 Query: 503 EQSKAQLVVIAHDVDPIELVVW 568 E KA+LV+IA DVDPIELVV+ Sbjct: 143 EAKKAKLVLIASDVDPIELVVF 164
>RL7A_CHICK (P32429) 60S ribosomal protein L7a| Length = 265 Score = 147 bits (371), Expect = 2e-35 Identities = 77/141 (54%), Positives = 94/141 (66%), Gaps = 1/141 (0%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKRPK FGIG + PK+DL RFVKWP PPA++QF++ LD Sbjct: 28 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRSILYKRLKVPPAINQFSQALD 87 Query: 329 KNLATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIE 505 + AT L K+ KYRPE K KK+RLL RA+ +A GK K+P V++ G+N VT L+E Sbjct: 88 RQTATQLLKLAHKYRPETKQEKKQRLLARAEQKAAGKGDTPTKRPPVLRAGVNTVTTLVE 147 Query: 506 QSKAQLVVIAHDVDPIELVVW 568 KAQLVVIAHDVDPIELVV+ Sbjct: 148 NKKAQLVVIAHDVDPIELVVF 168
>RL8A_YEAST (P17076) 60S ribosomal protein L8-A (L7A-2) (L4-2) (YL5) (RP6)| (Maintenance of killer protein 7) Length = 255 Score = 139 bits (349), Expect = 7e-33 Identities = 74/142 (52%), Positives = 88/142 (61%), Gaps = 2/142 (1%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPL PK FGIG A+ PK++L R+VKWP PP + QF TLD Sbjct: 23 NPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQRQKKILSIRLKVPPTIAQFQYTLD 82 Query: 329 KNLATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLI 502 +N A FK+ KYRPE KKERL K A A AEGK+ + + KP VKYGLNHV LI Sbjct: 83 RNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALI 142 Query: 503 EQSKAQLVVIAHDVDPIELVVW 568 E KA+LV+IA+DVDPIELVV+ Sbjct: 143 ENKKAKLVLIANDVDPIELVVF 164
>RL8B_YEAST (P29453) 60S ribosomal protein L8-B (L7A-1) (L4-1) (YL5) (RP6)| Length = 255 Score = 138 bits (348), Expect = 1e-32 Identities = 74/142 (52%), Positives = 88/142 (61%), Gaps = 2/142 (1%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPL PK FGIG A+ PK++L R+VKWP PP + QF TLD Sbjct: 23 NPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRLQRQKKILSIRLKVPPTIAQFQYTLD 82 Query: 329 KNLATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGKTVE--AKKPIVVKYGLNHVTYLI 502 +N A FK+ KYRPE KKERL K A A AEGK+ + + KP VKYGLNHV LI Sbjct: 83 RNTAAETFKLFNKYRPETAAEKKERLTKEAAAIAEGKSKQDASPKPYAVKYGLNHVVSLI 142 Query: 503 EQSKAQLVVIAHDVDPIELVVW 568 E KA+LV+IA+DVDPIELVV+ Sbjct: 143 ENKKAKLVLIANDVDPIELVVF 164
>RL7A_ANOGA (O76732) 60S ribosomal protein L7a| Length = 271 Score = 131 bits (330), Expect = 1e-30 Identities = 68/141 (48%), Positives = 91/141 (64%), Gaps = 1/141 (0%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKR K +GIG + PK+DL RFVKWP PP ++QFT+TLD Sbjct: 35 NPLFEKRVKNYGIGQNVQPKRDLSRFVKWPKYIRIQRHRAILQKRLKIPPPINQFTQTLD 94 Query: 329 KNLATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIE 505 K A + K KYRPE+ +A+ +RL +A+A+A GK +K+ ++ G+N V ++E Sbjct: 95 KPTAQQVMKCWKKYRPENPIARVQRLKAKAEAKAAGKEEPPSKRANQLRQGINSVVKMVE 154 Query: 506 QSKAQLVVIAHDVDPIELVVW 568 Q KAQLV+IAHDVDPIELVV+ Sbjct: 155 QKKAQLVIIAHDVDPIELVVY 175
>RL7A_CAEEL (Q966C6) 60S ribosomal protein L7a| Length = 264 Score = 129 bits (324), Expect = 6e-30 Identities = 67/140 (47%), Positives = 86/140 (61%), Gaps = 1/140 (0%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKR + F IG + PKKD+ RFVKWP PP ++QF LD Sbjct: 29 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 88 Query: 329 KNLATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGKTVE-AKKPIVVKYGLNHVTYLIE 505 A FK+L KYRPE AKK RL RA+A A GK E K+P V++G+N +T L+E Sbjct: 89 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 148 Query: 506 QSKAQLVVIAHDVDPIELVV 565 +AQLV+IAHDV+P+E+V+ Sbjct: 149 TRRAQLVLIAHDVNPLEIVL 168
>RL7A_PIG (Q29375) 60S ribosomal protein L7a (Fragment)| Length = 132 Score = 85.5 bits (210), Expect = 1e-16 Identities = 47/78 (60%), Positives = 57/78 (73%), Gaps = 1/78 (1%) Frame = +2 Query: 338 ATNLFKMLLKYRPEDKVAKKERLLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIEQSK 514 AT L K+ KYRPE K KK+RLL RA+ +A K V K+P V++ G+N VT L+E K Sbjct: 3 ATQLLKVAHKYRPETKQEKKQRLLARAEKKAAXKGDVPTKRPPVLRAGVNTVTTLVENKK 62 Query: 515 AQLVVIAHDVDPIELVVW 568 AQLVVIAHDVDPIELVV+ Sbjct: 63 AQLVVIAHDVDPIELVVF 80
>RL7A_AERPE (Q9YAX7) 50S ribosomal protein L7Ae| Length = 127 Score = 39.7 bits (91), Expect = 0.006 Identities = 24/64 (37%), Positives = 32/64 (50%) Frame = +2 Query: 374 PEDKVAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPI 553 PED K +KRA+ +K G N T +E+ A+LVVIA DVDP Sbjct: 12 PEDLAEKAYEAVKRARETGR-----------IKKGTNETTKAVERGLAKLVVIAEDVDPP 60 Query: 554 ELVV 565 E+V+ Sbjct: 61 EIVM 64
>RL7A_METTH (O26355) 50S ribosomal protein L7Ae| Length = 123 Score = 35.8 bits (81), Expect = 0.088 Identities = 17/32 (53%), Positives = 22/32 (68%) Frame = +2 Query: 467 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELV 562 V G N VT +E+ AQLV+IA DV+P E+V Sbjct: 32 VSKGTNEVTKAVERGVAQLVLIAEDVEPAEIV 63
>RL7A_THEAC (Q9HJ56) 50S ribosomal protein L7Ae| Length = 121 Score = 33.9 bits (76), Expect = 0.33 Identities = 17/34 (50%), Positives = 24/34 (70%) Frame = +2 Query: 467 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVW 568 VK G N V IE+ +++LVVIA DV+P E+V + Sbjct: 31 VKKGTNEVIKSIERGESKLVVIAEDVNPPEVVYY 64
>RL7A_THEVO (Q97BK8) 50S ribosomal protein L7Ae| Length = 121 Score = 33.5 bits (75), Expect = 0.44 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = +2 Query: 467 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVW 568 +K G N V IE+ +++LVVIA DV+P E+V + Sbjct: 31 IKKGTNEVIKSIERGESKLVVIAEDVNPPEVVYY 64
>LAH1_YEAST (P33399) La protein homolog (La ribonucleoprotein) (La autoantigen| homolog) Length = 275 Score = 31.6 bits (70), Expect = 1.7 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = +2 Query: 350 FKMLLKYRPEDKVAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVV 529 F + KYRP DKV + R + + A+G+ V+ + P+ + N IEQ++ L V Sbjct: 71 FNRMKKYRPVDKVIEALRSSEILEVSADGENVKRRVPLDLTAARN---ARIEQNQRTLAV 127 Query: 530 IAHDVDPIE 556 + + +E Sbjct: 128 MNFPHEDVE 136
>GUNA_BUTFI (P22541) Endoglucanase A precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) (EGA) Length = 429 Score = 30.4 bits (67), Expect = 3.7 Identities = 13/27 (48%), Positives = 22/27 (81%) Frame = +2 Query: 353 KMLLKYRPEDKVAKKERLLKRAQAEAE 433 K+++K + +D+ AKKE+ LK+A+ EAE Sbjct: 60 KLVIKEKKQDESAKKEQELKKAKEEAE 86
>MAGC2_HUMAN (Q9UBF1) Melanoma-associated antigen C2 (MAGE-C2 antigen) (MAGE-E1| antigen) (Hepatocellular carcinoma-associated antigen 587) (Cancer-testis antigen 10) (CT10) Length = 373 Score = 29.6 bits (65), Expect = 6.3 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +2 Query: 293 PPALHQFTRTLDKNLATNLFKMLLKYRPEDKVAKKERLL 409 P + FT TLD+ +A + +LLKY E+ V + E L+ Sbjct: 131 PDSESSFTYTLDEKVAELVEFLLLKYEAEEPVTEAEMLM 169 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,903,416 Number of Sequences: 219361 Number of extensions: 609883 Number of successful extensions: 2443 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2385 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2415 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
