>CABP4_BOVIN (Q8HZJ4) Calcium-binding protein 4 (CaBP4)|
          Length = 279

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
 Frame = -2

Query: 335 LRGLRAQPR--GSDPGCVGPRL-------RRHRERAEIGYPARRGVGPQRQLGDHRPTAA 183
           LRG R  P   G      GP          R RE  E   P+  G+ P+RQ   HRP   
Sbjct: 49  LRGSRKGPSSSGEQTPMQGPEAPGSSKNPSRTREGQEGPIPSASGLAPRRQSHRHRP--G 106

Query: 182 PSHSAALRCQG 150
           P H AA R  G
Sbjct: 107 PQHDAAQRMYG 117

>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA
           protein kinase)
          Length = 1007

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +1

Query: 202 SPSCRWGPTPRRAGYPISARSRWRLRR 282
           SP  RW PT RR+  PI  RSR  LRR
Sbjct: 431 SPINRWSPTRRRSRSPIRRRSRSPLRR 457

>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4
           kinase)
          Length = 1007

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +1

Query: 202 SPSCRWGPTPRRAGYPISARSRWRLRR 282
           SP  RW PT RR+  PI  RSR  LRR
Sbjct: 431 SPINRWSPTRRRSRSPIRRRSRSPLRR 457

>UL50_HCMVA (P16791) Protein UL50 (HFLF4 protein)|
          Length = 397

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 202 SPSCRWGPTPRRAGYPISARSRWRLRRGPTQPGSLP 309
           SP C   P+  R GY  +  S WR R GP++P S P
Sbjct: 324 SPPC--APSLERTGYRWAPSSWWRARSGPSRPQSGP 357

>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +1

Query: 151  PWQRRAAEWEGAAVGRWSPSCRWGPTPRRAGYPISARS 264
            PW + A      A G WSPS   G TP  AG+  SA S
Sbjct: 1519 PWNQGATP----AYGAWSPSVGSGMTPGAAGFSPSAAS 1552

>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +1

Query: 151  PWQRRAAEWEGAAVGRWSPSCRWGPTPRRAGYPISARS 264
            PW + A      A G WSPS   G TP  AG+  SA S
Sbjct: 1519 PWNQGATP----AYGAWSPSVGSGMTPGAAGFSPSAAS 1552

>GDF1_MOUSE (P20863) Embryonic growth/differentiation factor 1 precursor|
           (GDF-1)
          Length = 357

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -2

Query: 293 CVGPRLRRHRE-RAEIG----YPARRGVGPQRQLGDHRPTAAPSHSAALRCQG 150
           C  PRLRRH E R E+G       RR     R++G HR   AP    A  CQG
Sbjct: 230 CPLPRLRRHTEPRVEVGPVGTCRTRRLHVSFREVGWHRWVIAPRGFLANFCQG 282

>RECO_SYNP6 (Q5N4L9) DNA repair protein recO (Recombination protein O)|
          Length = 266

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 175 WEGAAVGRWSPSCRWGPTPRRAGYPISARSRWRLRRGPTQPGSL 306
           W+  A   W+P   +    ++A  P   +SRWR+R  P+  G L
Sbjct: 141 WQLLAWAGWAPQTHYCCLTQQAVQPRLEQSRWRVRYSPSLGGVL 184


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,632,755
Number of Sequences: 219361
Number of extensions: 792547
Number of successful extensions: 2578
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2574
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)